>NHR20_CAEEL (Q09565) Nuclear hormone receptor family member nhr-20|
          Length = 457

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 21/79 (26%), Positives = 34/79 (43%)
 Frame = -1

Query: 256 GFSCLRPENVCKVCGF*ISCSNRCMSTL*LQCLGYLLQSIRW**AVLFGKLRSVQDTCVP 77
           G+S + P + C VC      S    ST  L C  +  +++            ++Q  C  
Sbjct: 9   GYSGIPPTSKCLVCEHPDGGSAHFGSTSCLACAAFFRRTVSL----------NIQFQCKK 58

Query: 76  ECHCCIFLFLLVFCKACNF 20
           + +C IF  L + C+AC F
Sbjct: 59  DKNCVIFHELRMICRACRF 77

>PIVA2_ADECT (P87552) Maturation protein (Protein IVA2)|
          Length = 446

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -3

Query: 230 CLQSLWFLNLMLKSVHVHPLATMFGLLTTVDQVVIS-CTLWEAQVCTGYLCTGVPLLYIP 54
           C +S    NLM   + V    T+F +   VD +       WE Q+C G    G     +P
Sbjct: 174 CGKSQLLRNLMSAQLIVPAPETVFFITPQVDMIPPQEIAAWETQICEGNFLAGPENTVVP 233

Query: 53  FSSSIL 36
            S SI+
Sbjct: 234 QSGSIM 239

>PIVA2_ADECC (Q65945) Maturation protein (Protein IVA2)|
          Length = 446

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -3

Query: 230 CLQSLWFLNLMLKSVHVHPLATMFGLLTTVDQVVIS-CTLWEAQVCTGYLCTGVPLLYIP 54
           C +S    NLM   + V    T+F +   VD +       WE Q+C G    G     +P
Sbjct: 174 CGKSQLLRNLMSAQLIVPTPETVFFITPQVDMIPPQEIAAWETQICEGNFLAGPENTVVP 233

Query: 53  FSSSIL 36
            S SI+
Sbjct: 234 QSGSIM 239

>PIVA2_ADECR (Q96680) Maturation protein (Protein IVA2)|
          Length = 502

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -3

Query: 230 CLQSLWFLNLMLKSVHVHPLATMFGLLTTVDQVVIS-CTLWEAQVCTGYLCTGVPLLYIP 54
           C +S    NLM   + V    T+F +   VD +       WE Q+C G    G     +P
Sbjct: 230 CGKSQLLRNLMSAQLIVPTPETVFFITPQVDMIPPQEIAAWETQICEGNFLAGPENTVVP 289

Query: 53  FSSSIL 36
            S SI+
Sbjct: 290 QSGSIM 295

>DDX11_HUMAN (Q96FC9) Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-)|
           (DEAD/H box protein 11) (CHL1 homolog) (Keratinocyte
           growth factor-regulated gene 2 protein) (KRG-2)
          Length = 970

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +3

Query: 177 VDMHRFEHEIQKPQTLQTFSGRRQLKPLGCVFTQHVTKKMGLL 305
           VDM R  HE +K    +    RRQ K   C F  H  ++MGLL
Sbjct: 286 VDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNH--EQMGLL 326

>EXOC4_RAT (Q62824) Exocyst complex component 4 (Exocyst complex component|
           Sec8) (rSec8)
          Length = 975

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
 Frame = -2

Query: 525 IQDLIELIRTE---KQNDSSASDPSAEAFFASTLR 430
           IQD+++++ TE    +N  +AS+PSA+  +AST R
Sbjct: 390 IQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGR 424

>EXOC4_MOUSE (O35382) Exocyst complex component 4 (Exocyst complex component|
           Sec8)
          Length = 975

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
 Frame = -2

Query: 525 IQDLIELIRTE---KQNDSSASDPSAEAFFASTLR 430
           IQD+++++ TE    +N  +AS+PSA+  +AST R
Sbjct: 390 IQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGR 424

>EXOC4_HUMAN (Q96A65) Exocyst complex component 4 (Exocyst complex component|
           Sec8)
          Length = 974

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
 Frame = -2

Query: 525 IQDLIELIRTE---KQNDSSASDPSAEAFFASTLR 430
           IQD+++++ TE    +N  +AS+PSA+  +AST R
Sbjct: 389 IQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGR 423

>S15A2_RABIT (P46029) Oligopeptide transporter, kidney isoform (Peptide|
           transporter 2) (Kidney H(+)/peptide cotransporter)
           (Solute carrier family 15 member 2)
          Length = 729

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -3

Query: 251 QLPPTRKC-LQSLWFLNLMLKSVHVHPLATMFGLLTTVDQVVISCTLWEAQVCTGYLCTG 75
           Q P + K  LQ+ W L + + ++ V  +A   GL+   + V+ SC L    VC  +   G
Sbjct: 636 QAPSSMKSVLQAAWLLTVAIGNIIVLVVAQFSGLVQWAEFVLFSCLL--LVVCLIFSIMG 693

Query: 74  VPLLYIPFSSSILQ 33
               YIP  S  +Q
Sbjct: 694 --YYYIPIKSEDIQ 705


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,351,477
Number of Sequences: 219361
Number of extensions: 1829381
Number of successful extensions: 4888
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4888
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)