| Clone Name | rbags32b06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469973.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2851 Score = 168 bits (85), Expect = 1e-38 Identities = 163/189 (86%) Strand = Plus / Minus Query: 370 ttttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgta 429 |||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| ||||| Sbjct: 2420 ttttatttgctcatatttttcacctatgctcccacctttctgcttctggaattcaatgta 2361 Query: 430 tcgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttg 489 |||| ||||||||||||||| || || | |||||||||| | || || | ||| |||| Sbjct: 2360 acgtaaagtgcttgcaaagaaggcctctgtcgatggatcagctacagtgttctcactttg 2301 Query: 490 cttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaat 549 |||||||||||| |||| ||| |||||||| ||||| |||||||||||||| | |||||| Sbjct: 2300 cttctctgtcctaatcaattcaatcaaatcctggattacagtgttcgtgatctctggaat 2241 Query: 550 tcctttctc 558 ||||||||| Sbjct: 2240 tcctttctc 2232 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/93 (87%), Gaps = 3/93 (3%) Strand = Plus / Minus Query: 47 aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 105 ||||||||||| |||||||||||| |||| ||||||||||| | ||||||||| |||| Sbjct: 2716 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 2658 Query: 106 gcttcccaaagagtacagcttattaccacctga 138 ||||||| ||| ||| |||||||| |||||||| Sbjct: 2657 gcttccc-aagggtaaagcttattgccacctga 2626
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 168 bits (85), Expect = 1e-38 Identities = 163/189 (86%) Strand = Plus / Minus Query: 370 ttttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgta 429 |||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| ||||| Sbjct: 33128712 ttttatttgctcatatttttcacctatgctcccacctttctgcttctggaattcaatgta 33128653 Query: 430 tcgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttg 489 |||| ||||||||||||||| || || | |||||||||| | || || | ||| |||| Sbjct: 33128652 acgtaaagtgcttgcaaagaaggcctctgtcgatggatcagctacagtgttctcactttg 33128593 Query: 490 cttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaat 549 |||||||||||| |||| ||| |||||||| ||||| |||||||||||||| | |||||| Sbjct: 33128592 cttctctgtcctaatcaattcaatcaaatcctggattacagtgttcgtgatctctggaat 33128533 Query: 550 tcctttctc 558 ||||||||| Sbjct: 33128532 tcctttctc 33128524 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/93 (87%), Gaps = 3/93 (3%) Strand = Plus / Minus Query: 47 aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 105 ||||||||||| |||||||||||| |||| ||||||||||| | ||||||||| |||| Sbjct: 33129008 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 33128950 Query: 106 gcttcccaaagagtacagcttattaccacctga 138 ||||||| ||| ||| |||||||| |||||||| Sbjct: 33128949 gcttccc-aagggtaaagcttattgccacctga 33128918
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 168 bits (85), Expect = 1e-38 Identities = 163/189 (86%) Strand = Plus / Minus Query: 370 ttttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgta 429 |||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| ||||| Sbjct: 33219222 ttttatttgctcatatttttcacctatgctcccacctttctgcttctggaattcaatgta 33219163 Query: 430 tcgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttg 489 |||| ||||||||||||||| || || | |||||||||| | || || | ||| |||| Sbjct: 33219162 acgtaaagtgcttgcaaagaaggcctctgtcgatggatcagctacagtgttctcactttg 33219103 Query: 490 cttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaat 549 |||||||||||| |||| ||| |||||||| ||||| |||||||||||||| | |||||| Sbjct: 33219102 cttctctgtcctaatcaattcaatcaaatcctggattacagtgttcgtgatctctggaat 33219043 Query: 550 tcctttctc 558 ||||||||| Sbjct: 33219042 tcctttctc 33219034 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/93 (87%), Gaps = 3/93 (3%) Strand = Plus / Minus Query: 47 aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 105 ||||||||||| |||||||||||| |||| ||||||||||| | ||||||||| |||| Sbjct: 33219518 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 33219460 Query: 106 gcttcccaaagagtacagcttattaccacctga 138 ||||||| ||| ||| |||||||| |||||||| Sbjct: 33219459 gcttccc-aagggtaaagcttattgccacctga 33219428
>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence, complete sequence Length = 144487 Score = 168 bits (85), Expect = 1e-38 Identities = 163/189 (86%) Strand = Plus / Plus Query: 370 ttttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgta 429 |||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| ||||| Sbjct: 115843 ttttatttgctcatatttttcacctatgctcccacctttctgcttctggaattcaatgta 115902 Query: 430 tcgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttg 489 |||| ||||||||||||||| || || | |||||||||| | || || | ||| |||| Sbjct: 115903 acgtaaagtgcttgcaaagaaggcctctgtcgatggatcagctacagtgttctcactttg 115962 Query: 490 cttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaat 549 |||||||||||| |||| ||| |||||||| ||||| |||||||||||||| | |||||| Sbjct: 115963 cttctctgtcctaatcaattcaatcaaatcctggattacagtgttcgtgatctctggaat 116022 Query: 550 tcctttctc 558 ||||||||| Sbjct: 116023 tcctttctc 116031 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/93 (87%), Gaps = 3/93 (3%) Strand = Plus / Plus Query: 47 aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 105 ||||||||||| |||||||||||| |||| ||||||||||| | ||||||||| |||| Sbjct: 115547 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 115605 Query: 106 gcttcccaaagagtacagcttattaccacctga 138 ||||||| ||| ||| |||||||| |||||||| Sbjct: 115606 gcttccc-aagggtaaagcttattgccacctga 115637
>dbj|AK099884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111P21, full insert sequence Length = 2931 Score = 168 bits (85), Expect = 1e-38 Identities = 163/189 (86%) Strand = Plus / Minus Query: 370 ttttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgta 429 |||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| ||||| Sbjct: 2512 ttttatttgctcatatttttcacctatgctcccacctttctgcttctggaattcaatgta 2453 Query: 430 tcgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttg 489 |||| ||||||||||||||| || || | |||||||||| | || || | ||| |||| Sbjct: 2452 acgtaaagtgcttgcaaagaaggcctctgtcgatggatcagctacagtgttctcactttg 2393 Query: 490 cttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaat 549 |||||||||||| |||| ||| |||||||| ||||| |||||||||||||| | |||||| Sbjct: 2392 cttctctgtcctaatcaattcaatcaaatcctggattacagtgttcgtgatctctggaat 2333 Query: 550 tcctttctc 558 ||||||||| Sbjct: 2332 tcctttctc 2324 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/93 (87%), Gaps = 3/93 (3%) Strand = Plus / Minus Query: 47 aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 105 ||||||||||| |||||||||||| |||| ||||||||||| | ||||||||| |||| Sbjct: 2808 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 2750 Query: 106 gcttcccaaagagtacagcttattaccacctga 138 ||||||| ||| ||| |||||||| |||||||| Sbjct: 2749 gcttccc-aagggtaaagcttattgccacctga 2718
>dbj|AK069591.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023M08, full insert sequence Length = 3011 Score = 168 bits (85), Expect = 1e-38 Identities = 163/189 (86%) Strand = Plus / Minus Query: 370 ttttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgta 429 |||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| ||||| Sbjct: 2580 ttttatttgctcatatttttcacctatgctcccacctttctgcttctggaattcaatgta 2521 Query: 430 tcgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttg 489 |||| ||||||||||||||| || || | |||||||||| | || || | ||| |||| Sbjct: 2520 acgtaaagtgcttgcaaagaaggcctctgtcgatggatcagctacagtgttctcactttg 2461 Query: 490 cttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaat 549 |||||||||||| |||| ||| |||||||| ||||| |||||||||||||| | |||||| Sbjct: 2460 cttctctgtcctaatcaattcaatcaaatcctggattacagtgttcgtgatctctggaat 2401 Query: 550 tcctttctc 558 ||||||||| Sbjct: 2400 tcctttctc 2392 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/93 (87%), Gaps = 3/93 (3%) Strand = Plus / Minus Query: 47 aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 105 ||||||||||| |||||||||||| |||| ||||||||||| | ||||||||| |||| Sbjct: 2876 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 2818 Query: 106 gcttcccaaagagtacagcttattaccacctga 138 ||||||| ||| ||| |||||||| |||||||| Sbjct: 2817 gcttccc-aagggtaaagcttattgccacctga 2786
>gb|AY104601.1| Zea mays PCO085879 mRNA sequence Length = 1686 Score = 145 bits (73), Expect = 2e-31 Identities = 160/189 (84%) Strand = Plus / Minus Query: 371 tttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgtat 430 |||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||| Sbjct: 1155 tttatctgttcatatttttcgcctatgctcccacctttctgcttctgaaattcaatgtac 1096 Query: 431 cgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttgc 490 || | |||||| | |||||| || || | ||||||||||| | || | | ||| ||||| Sbjct: 1095 cgcaaagtgctagaaaagaatgcctctgtagatggatcagctacagagttatcactttgc 1036 Query: 491 ttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaatt 550 ||||| || || |||| ||| ||||||||||| || |||||||| ||||||||||||||| Sbjct: 1035 ttctccgttctaatcaattcaatcaaatcttgaatcacagtgtttgtgatttgtggaatt 976 Query: 551 cctttctca 559 ||||||||| Sbjct: 975 cctttctca 967 Score = 54.0 bits (27), Expect = 5e-04 Identities = 52/59 (88%), Gaps = 1/59 (1%) Strand = Plus / Minus Query: 81 acacaagta-tcctgtacagacctgagcttcccaaagagtacagcttattaccacctga 138 ||||||||| ||||||||||||||| ||| ||||||| |||||||||| |||||||| Sbjct: 1421 acacaagtaatcctgtacagacctgtgctccccaaaggacacagcttattgccacctga 1363
>gb|BT016441.1| Zea mays clone Contig274 mRNA sequence Length = 1532 Score = 129 bits (65), Expect = 1e-26 Identities = 158/189 (83%) Strand = Plus / Minus Query: 371 tttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgtat 430 ||||| |||||||| ||||| ||||| ||||||||||||||||||| ||||| ||||| Sbjct: 1165 tttatttgttcatatttttcgcctatagttccacctttctgcttctgaaattcaatgtac 1106 Query: 431 cgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttgc 490 || | |||||| | |||||| || || | ||||||||||| | || | | ||| ||||| Sbjct: 1105 cgcaaagtgctagaaaagaatgcctctgtagatggatcagctacagagttatcactttgc 1046 Query: 491 ttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaatt 550 ||||| || || |||| ||| ||||||||||| || |||||||| ||||||||||||||| Sbjct: 1045 ttctccgttctaatcaattcaatcaaatcttgaatcacagtgtttgtgatttgtggaatt 986 Query: 551 cctttctca 559 ||||||||| Sbjct: 985 cctttctca 977 Score = 40.1 bits (20), Expect = 7.6 Identities = 51/59 (86%), Gaps = 3/59 (5%) Strand = Plus / Minus Query: 81 acacaagta-tcctgtacagacctgagcttcccaaagagtacagcttattaccacctga 138 ||||||||| ||||||||||||||| ||| |||| || |||||||||| |||||||| Sbjct: 1430 acacaagtaatcctgtacagacctgtgctcaccaa--aggacagcttattgccacctga 1374
>gb|BT024078.1| Zea mays clone EL01N0521E04 mRNA sequence Length = 2855 Score = 129 bits (65), Expect = 1e-26 Identities = 158/189 (83%) Strand = Plus / Minus Query: 371 tttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgtat 430 ||||| |||||||| ||||| ||||| ||||||||||||||||||| ||||| ||||| Sbjct: 2482 tttatttgttcatatttttcgcctatagttccacctttctgcttctgaaattcaatgtac 2423 Query: 431 cgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttgc 490 || | |||||| | |||||| || || | ||||||||||| | || | | ||| ||||| Sbjct: 2422 cgcaaagtgctagaaaagaatgcctctgtagatggatcagctacagagttatcactttgc 2363 Query: 491 ttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaatt 550 ||||| || || |||| ||| ||||||||||| || |||||||| ||||||||||||||| Sbjct: 2362 ttctccgttctaatcaattcaatcaaatcttgaatcacagtgtttgtgatttgtggaatt 2303 Query: 551 cctttctca 559 ||||||||| Sbjct: 2302 cctttctca 2294 Score = 40.1 bits (20), Expect = 7.6 Identities = 51/59 (86%), Gaps = 3/59 (5%) Strand = Plus / Minus Query: 81 acacaagta-tcctgtacagacctgagcttcccaaagagtacagcttattaccacctga 138 ||||||||| ||||||||||||||| ||| |||| || |||||||||| |||||||| Sbjct: 2747 acacaagtaatcctgtacagacctgtgctcaccaa--aggacagcttattgccacctga 2691
>gb|BT019199.1| Zea mays clone Contig872.F mRNA sequence Length = 1093 Score = 113 bits (57), Expect = 6e-22 Identities = 156/189 (82%) Strand = Plus / Minus Query: 371 tttatctgttcatacttttctcctatgcttccacctttctgcttctggaattcgatgtat 430 |||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||| Sbjct: 717 tttatctgttcatatttttcgcctatgctcccacctttctgcttctgaaattcaatgtac 658 Query: 431 cgtagagtgcttgcaaagaaagcttcggcagatggatcagatgcactgctgtcattttgc 490 || | |||||| | |||||| || || | ||||||||||| | || | | ||| ||||| Sbjct: 657 cgcaaagtgctagaaaagaatgcctctgtagatggatcagctacagagttatcactttgc 598 Query: 491 ttctctgtcctgatcagttcgatcaaatcttggatgacagtgttcgtgatttgtggaatt 550 ||||| || || |||| ||| ||||||||||| || || || || ||||| || |||||| Sbjct: 597 ttctccgttctaatcaattcaatcaaatcttgaatcacggtatttgtgatctgcggaatt 538 Query: 551 cctttctca 559 ||||||||| Sbjct: 537 cctttctca 529 Score = 54.0 bits (27), Expect = 5e-04 Identities = 52/59 (88%), Gaps = 1/59 (1%) Strand = Plus / Minus Query: 81 acacaagta-tcctgtacagacctgagcttcccaaagagtacagcttattaccacctga 138 ||||||||| ||||||||||||||| ||| ||||||| |||||||||| |||||||| Sbjct: 983 acacaagtaatcctgtacagacctgtgctccccaaaggacacagcttattgccacctga 925
>gb|AY389644.1| Hyacinthus orientalis vacuolar protein sorting-associated protein mRNA, partial cds Length = 709 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 401 ccacctttctgcttctggaattcgatgtatcgtagagtgcttgcaaagaaagcttcggca 460 ||||| || ||||||||||| | |||||||| ||||||||| ||||||||||| || ||| Sbjct: 205 ccacccttttgcttctggaaatggatgtatcttagagtgctagcaaagaaagcgtctgca 146 Query: 461 gatggatcaga 471 ||||||||||| Sbjct: 145 gatggatcaga 135
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 tcagaaaccacaaactttgca 226 ||||||||||||||||||||| Sbjct: 2404555 tcagaaaccacaaactttgca 2404535
>emb|AL122019.28|HSJ831A12 Human DNA sequence from clone RP5-831A12 on chromosome 1q24.1-25.3, complete sequence Length = 110539 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 38 aaatactagaagaaaaaggaatata 62 |||| |||||||||||||||||||| Sbjct: 73610 aaattctagaagaaaaaggaatata 73634
>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome Length = 2414465 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 aatactagaagaaaaaggaat 59 ||||||||||||||||||||| Sbjct: 1043537 aatactagaagaaaaaggaat 1043517
>gb|AC099538.2| Homo sapiens chromosome 3 clone RP11-90I9, complete sequence Length = 170033 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 aaatactagaagaaaaaggaa 58 ||||||||||||||||||||| Sbjct: 64998 aaatactagaagaaaaaggaa 65018
>gb|AC002531.1|AC002531 Homo sapiens chromosome Y, clone 486_O_8, complete sequence Length = 197900 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 agacctgagcttcccaaagag 118 ||||||||||||||||||||| Sbjct: 183590 agacctgagcttcccaaagag 183570
>dbj|AB084905.1| Paralichthys olivaceus mRNA for perforin, complete cds Length = 2177 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 105 agcttcccaaagagtacagct 125 ||||||||||||||||||||| Sbjct: 688 agcttcccaaagagtacagct 708
>gb|AC004474.1|AC004474 Homo sapiens chromosome Y, clone 475I1, complete sequence Length = 148280 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 agacctgagcttcccaaagag 118 ||||||||||||||||||||| Sbjct: 29884 agacctgagcttcccaaagag 29864
>dbj|AP001998.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-367C21, complete sequence Length = 161529 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 367 agcttttatctgttcatactt 387 ||||||||||||||||||||| Sbjct: 90000 agcttttatctgttcatactt 90020
>gb|AC117825.9| Mus musculus chromosome 18, clone RP24-80J4, complete sequence Length = 198559 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 ctgccagccaaaatggaaac 330 |||||||||||||||||||| Sbjct: 141737 ctgccagccaaaatggaaac 141756
>gb|AC124142.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0015A05, complete sequence Length = 127330 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 ggcttgctttctctctgccagcca 320 |||||||| ||||||||||||||| Sbjct: 41020 ggcttgctgtctctctgccagcca 40997
>gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077J22, complete sequence Length = 173903 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 ggcttgctttctctctgccagcca 320 |||||||| ||||||||||||||| Sbjct: 2654 ggcttgctgtctctctgccagcca 2631
>ref|XM_581035.2| PREDICTED: Bos taurus similar to CG15021-PA, transcript variant 1 (LOC504853), mRNA Length = 3422 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 agggtggacatgcaccgatttgag 197 ||||||||||||||| |||||||| Sbjct: 3290 agggtggacatgcacggatttgag 3313
>gb|AC120164.7| Mus musculus chromosome 19, clone RP24-470C3, complete sequence Length = 164107 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 148 gtaagtaacccaaacattgtagct 171 ||||||||||||| |||||||||| Sbjct: 59126 gtaagtaacccaatcattgtagct 59103
>gb|AC140245.3| Mus musculus BAC clone RP23-293J3 from chromosome 18, complete sequence Length = 195082 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 tgcttctctgtcctgatcag 507 |||||||||||||||||||| Sbjct: 48280 tgcttctctgtcctgatcag 48261
>gb|AC135356.2| Mus musculus BAC clone RP24-545J19 from chromosome 17, complete sequence Length = 186773 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 aatactagaagaaaaaggaa 58 |||||||||||||||||||| Sbjct: 115365 aatactagaagaaaaaggaa 115384
>gb|AC122842.3| Mus musculus BAC clone RP23-148K14 from 1, complete sequence Length = 209506 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 297 ggcttgctttctctctgccagcca 320 |||||||||||||| ||||||||| Sbjct: 109543 ggcttgctttctctgtgccagcca 109566
>gb|AC103930.10| Mus musculus chromosome 5, clone RP23-238D18, complete sequence Length = 203246 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 acaaactttgcaaacatttt 234 |||||||||||||||||||| Sbjct: 65186 acaaactttgcaaacatttt 65167
>gb|AC025047.17| Mus musculus chromosome 1, clone RP23-56I8, complete sequence Length = 220713 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 ggcttgctttctctctgccagcca 320 |||||||||||||| ||||||||| Sbjct: 181248 ggcttgctttctctgtgccagcca 181225
>emb|AL732372.15| Human DNA sequence from clone RP4-669L17 on chromosome 1 Contains five novel genes, two novel pseudogenes and the gene for a novel protein similar to the olfactory receptor family, complete sequence Length = 153649 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aaaatactagaagaaaaagg 56 |||||||||||||||||||| Sbjct: 40911 aaaatactagaagaaaaagg 40892
>emb|AL353654.29| Human DNA sequence from clone RP1-24O22 on chromosome 6 Contains an olfactory receptor pseudogene, a gene for a novel protein similar to septin and a novel pseudogene, complete sequence Length = 86701 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aaaatactagaagaaaaagg 56 |||||||||||||||||||| Sbjct: 55880 aaaatactagaagaaaaagg 55899
>emb|AL031259.1|HS191N21 Human DNA sequence from clone RP1-191N21 on chromosome 6q27 Contains a 7 transmembrane receptor (rhodopsin family) (olfactory receptor like) pseudogene, the PDCD2 gene for programmed cell death 2 (RP8 homolog), the TBP gene for TATA box binding protein, the PSMB1 gene for proteasome subunit HC5 and two CpG islands, complete sequence Length = 113820 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aaaatactagaagaaaaagg 56 |||||||||||||||||||| Sbjct: 18371 aaaatactagaagaaaaagg 18390
>emb|CR938745.1| Human DNA sequence from clone XX-HCC1954_32J13, complete sequence Length = 164033 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 aatactagaagaaaaaggaa 58 |||||||||||||||||||| Sbjct: 152088 aatactagaagaaaaaggaa 152069
>emb|CR786561.14| Zebrafish DNA sequence from clone CH211-233K18 in linkage group 13, complete sequence Length = 84641 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 tgccctacttgtctcgagtt 362 |||||||||||||||||||| Sbjct: 16916 tgccctacttgtctcgagtt 16935
>gb|AC090844.7| Homo sapiens chromosome 17, clone RP11-387H17, complete sequence Length = 227857 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 aatactagaagaaaaaggaa 58 |||||||||||||||||||| Sbjct: 194505 aatactagaagaaaaaggaa 194486
>gb|AC129907.3| Homo sapiens chromosome 15, clone CTD-2280M1, complete sequence Length = 127340 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aaaatactagaagaaaaagg 56 |||||||||||||||||||| Sbjct: 34140 aaaatactagaagaaaaagg 34121
>gb|AC069307.7| Homo sapiens BAC clone RP11-738E22 from 4, complete sequence Length = 203474 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aaaatactagaagaaaaagg 56 |||||||||||||||||||| Sbjct: 95590 aaaatactagaagaaaaagg 95571
>dbj|AK139683.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library, clone:B020010K11 product:unclassifiable, full insert sequence Length = 3581 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 ctgccagccaaaatggaaac 330 |||||||||||||||||||| Sbjct: 3326 ctgccagccaaaatggaaac 3345
>gb|AC157548.7| Mus musculus chromosome 18, clone RP24-310H1, complete sequence Length = 177509 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 ctgccagccaaaatggaaac 330 |||||||||||||||||||| Sbjct: 85948 ctgccagccaaaatggaaac 85929
>gb|AC140725.3| Homo sapiens chromosome 15, clone, complete sequence Length = 181240 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aaaatactagaagaaaaagg 56 |||||||||||||||||||| Sbjct: 114263 aaaatactagaagaaaaagg 114282
>gb|AC092192.1|AC092192 Homo sapiens chromosome 19 clone LLNLF-127D1, complete sequence Length = 39041 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aaaatactagaagaaaaagg 56 |||||||||||||||||||| Sbjct: 27073 aaaatactagaagaaaaagg 27092
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 ggcttgctttctctctgccagcca 320 |||||||| ||||||||||||||| Sbjct: 2556134 ggcttgctgtctctctgccagcca 2556111
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 agaaaccacaaactttgcaaacat 231 |||| ||||||||||||||||||| Sbjct: 18756877 agaacccacaaactttgcaaacat 18756900
>gb|AC069287.7| Homo sapiens BAC clone RP11-304M2 from 11, complete sequence Length = 199487 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aaaatactagaagaaaaagg 56 |||||||||||||||||||| Sbjct: 162558 aaaatactagaagaaaaagg 162539
>gb|AC139237.2| Homo sapiens chromosome 5 clone XXcos-B22C68, complete sequence Length = 28607 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aaaatactagaagaaaaagg 56 |||||||||||||||||||| Sbjct: 2184 aaaatactagaagaaaaagg 2165
>gb|AC136309.9| Homo sapiens chromosome 11, clone RP11-242C5, complete sequence Length = 150642 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aaaatactagaagaaaaagg 56 |||||||||||||||||||| Sbjct: 82704 aaaatactagaagaaaaagg 82723
>gb|AC107977.13| Homo sapiens chromosome 15, clone CTD-2611K5, complete sequence Length = 152619 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aaaatactagaagaaaaagg 56 |||||||||||||||||||| Sbjct: 26937 aaaatactagaagaaaaagg 26956
>gb|AC131281.7| Homo sapiens chromosome 8, clone RP11-585F1, complete sequence Length = 120139 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aaaatactagaagaaaaagg 56 |||||||||||||||||||| Sbjct: 40905 aaaatactagaagaaaaagg 40886
>gb|AF276881.1|AF276881 Homo sapiens clone 15qtel_ctg0223_c140at7 sequence Length = 628 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aaaatactagaagaaaaagg 56 |||||||||||||||||||| Sbjct: 222 aaaatactagaagaaaaagg 203
>gb|AC138030.1| Homo sapiens chromosome 5 clone XXcos-B22C100, complete sequence Length = 44419 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aaaatactagaagaaaaagg 56 |||||||||||||||||||| Sbjct: 30057 aaaatactagaagaaaaagg 30038
>gb|AC114498.2| Homo sapiens chromosome 1 clone RP5-857K21, complete sequence Length = 121664 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aaaatactagaagaaaaagg 56 |||||||||||||||||||| Sbjct: 109690 aaaatactagaagaaaaagg 109709
>dbj|AP006233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1249E06 Length = 126534 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 agaaaccacaaactttgcaaacat 231 |||| ||||||||||||||||||| Sbjct: 78394 agaacccacaaactttgcaaacat 78417
>gb|AY122330.2| Cherry rasp leaf virus segment RNA-2, complete sequence Length = 3318 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 actagaagaaaaaggaatat 61 |||||||||||||||||||| Sbjct: 2428 actagaagaaaaaggaatat 2409
>gb|AC004842.2|AC004842 Homo sapiens PAC clone RP4-609N19 from 7p22, complete sequence Length = 120000 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aaaatactagaagaaaaagg 56 |||||||||||||||||||| Sbjct: 86716 aaaatactagaagaaaaagg 86697
>gb|AC004908.1|AC004908 Homo sapiens PAC clone RP5-855D21, complete sequence Length = 138251 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aaaatactagaagaaaaagg 56 |||||||||||||||||||| Sbjct: 52767 aaaatactagaagaaaaagg 52786
>gb|AC136371.4| Mus musculus chromosome 1, clone RP23-405G16, complete sequence Length = 225976 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 297 ggcttgctttctctctgccagcca 320 |||||||||||||| ||||||||| Sbjct: 184568 ggcttgctttctctgtgccagcca 184591
>ref|NR_002886.1| Mus musculus tubulin, alpha 2 pseudogene (LOC621740) on chromosome 18 Length = 3581 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 ctgccagccaaaatggaaac 330 |||||||||||||||||||| Sbjct: 3326 ctgccagccaaaatggaaac 3345
>emb|AL929347.8| Human DNA sequence from clone RP3-433O3 on chromosome 22, complete sequence Length = 128374 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aaaatactagaagaaaaagg 56 |||||||||||||||||||| Sbjct: 41747 aaaatactagaagaaaaagg 41766 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,517,030 Number of Sequences: 3902068 Number of extensions: 5517030 Number of successful extensions: 109109 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108819 Number of HSP's gapped (non-prelim): 280 length of query: 559 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 536 effective length of database: 17,143,297,704 effective search space: 9188807569344 effective search space used: 9188807569344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)