ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31m04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476928.1| Oryza sativa (japonica cultivar-group), mRNA 214 3e-52
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 214 3e-52
3dbj|AP005179.4| Oryza sativa (japonica cultivar-group) genomic D... 214 3e-52
4dbj|AK103069.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 3e-52
5dbj|AK059768.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 3e-52
6dbj|AP004384.3| Oryza sativa (japonica cultivar-group) genomic D... 214 3e-52
7gb|AY104821.1| Zea mays PCO118715 mRNA sequence 98 4e-17
8gb|AY106483.1| Zea mays PCO145034 mRNA sequence 48 0.034
9gb|AC096540.2| Homo sapiens chromosome 1 clone RP11-223A3, compl... 44 0.53
10tpg|BK005065.1| TPA: TPA_inf: Oryza sativa (indica cultivar-grou... 44 0.53
11gb|DQ298182.1| Oryza sativa (japonica cultivar-group) WRKY trans... 44 0.53
12dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
13dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
14dbj|AP005429.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
15dbj|AK067834.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.53
16gb|AC079799.7| Homo sapiens BAC clone RP11-665O4 from 7, complet... 42 2.1
17gb|AC004027.1| Homo sapiens PAC clone RP4-791I21 from 7, complet... 42 2.1
18gb|BT010003.1| Drosophila melanogaster RE30195 full insert cDNA 42 2.1
19emb|Y08160.1|DMDIDUMGE D.melanogaster mRNA for gene involved in ... 42 2.1
20gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 42 2.1
21ref|NM_165536.1| Drosophila melanogaster dilute class unconventi... 42 2.1
22ref|NM_165535.1| Drosophila melanogaster dilute class unconventi... 42 2.1
23ref|NM_057838.3| Drosophila melanogaster dilute class unconventi... 42 2.1
24gb|AC008258.4|AC008258 Drosophila melanogaster, chromosome 2R, r... 42 2.1
25gb|AC007741.4| Homo sapiens BAC clone RP11-340F16 from 2, comple... 42 2.1
26gb|AE003841.5| Drosophila melanogaster chromosome 2R, section 9 ... 42 2.1
27gb|AF003826.1|AF003826 Drosophila melanogaster myosin V mRNA, co... 42 2.1
28gb|AC004280.1|AC004280 Drosophila melanogaster DNA sequence (P1 ... 42 2.1
29ref|XM_469309.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.3
30gb|AC101802.9| Mus musculus chromosome 1, clone RP24-221A4, comp... 40 8.3
31gb|AE017132.1| Yersinia pestis biovar Medievalis str. 91001 sect... 40 8.3
32gb|AE009952.1| Yersinia pestis KIM, complete genome 40 8.3
33gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.3
34emb|AL121911.15|HSDJ989D7 Human DNA sequence from clone RP5-989D... 40 8.3
35gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 geno... 40 8.3
36emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp... 40 8.3
37dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
38dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
39dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
40dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
41dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
42dbj|AP004879.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
43dbj|AK062094.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.3
44dbj|AK061750.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.3
45gb|AY111928.1| Zea mays CL3440_1 mRNA sequence 40 8.3
46gb|AC148202.3| Carollia perspicillata clone 598J23, complete seq... 40 8.3
47emb|AJ414148.1| Yersinia pestis strain CO92 complete genome; seg... 40 8.3
48gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold 40 8.3 
>ref|XM_476928.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1393

 Score =  214 bits (108), Expect = 3e-52
 Identities = 228/268 (85%)
 Strand = Plus / Minus

                                                                        
Query: 191  tgggccgatcatagggagcaggcctatctcggtaactcccgccaaggcgagcaggtccag 250
            |||| |||||||| || ||||||||||||| |||||||||  ||| ||||||||||||| 
Sbjct: 1037 tgggacgatcatatggggcaggcctatctctgtaactcccagcaaagcgagcaggtccac 978

                                                                        
Query: 251  cactcccatatctgtcaccattcgccacacgtggaccacccctgccataaccaccagttc 310
            |  |||| |||||||||||| || |||  ||    ||||| ||| ||||||||||||  |
Sbjct: 977  cggtcccgtatctgtcaccactccccatgcgcatgccacctctgtcataaccaccagagc 918

                                                                        
Query: 311  ctctaggttcatcacggtaataacttccacctggccgccctccatctctctcatagcttc 370
            |||||||||||||||| || ||||||||||| | ||| ||||||||||| ||||||||||
Sbjct: 917  ctctaggttcatcacgatagtaacttccaccggaccgtcctccatctctttcatagcttc 858

                                                                        
Query: 371  tttccctggcaaagccacctgatgcataacgatcaccaccaccatatctgtcgccagaaa 430
            ||||||||| ||| |||| ||||||||||||||||  ||||||||||||||| || | ||
Sbjct: 857  tttccctggtaaatccacttgatgcataacgatcagaaccaccatatctgtcacctgtaa 798

                                        
Query: 431  aacgatcagcagctggaggatagcgatc 458
            ||||||| |||| ||| |||||||||||
Sbjct: 797  aacgatcggcagttggtggatagcgatc 770



 Score =  155 bits (78), Expect = 2e-34
 Identities = 131/148 (88%), Gaps = 3/148 (2%)
 Strand = Plus / Minus

                                                                       
Query: 463 ccaccaccataacgatcatcggcatagcggccaccatcataacgatcatcaacatagcga 522
           ||||||||||| ||||||||  ||||||| ||||||||||| || |||||||||||||| 
Sbjct: 747 ccaccaccatagcgatcatcaacatagcgcccaccatcatatcggtcatcaacatagcgg 688

                                                                       
Query: 523 ttagcaaaacggtctgatcctccaaagcggtcaccacgcccaccagcg---ccattgaca 579
           |||||||||||||||||||||||||||||||||||||| |||||| |    ||| || ||
Sbjct: 687 ttagcaaaacggtctgatcctccaaagcggtcaccacgtccaccaccagttccactgcca 628

                                       
Query: 580 tacctggaagggggagagtaccttccag 607
           || ||||||||||| |||||||||||||
Sbjct: 627 tatctggaagggggtgagtaccttccag 600
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  214 bits (108), Expect = 3e-52
 Identities = 228/268 (85%)
 Strand = Plus / Plus

                                                                           
Query: 191     tgggccgatcatagggagcaggcctatctcggtaactcccgccaaggcgagcaggtccag 250
               |||| |||||||| || ||||||||||||| |||||||||  ||| ||||||||||||| 
Sbjct: 4692029 tgggacgatcatatggggcaggcctatctctgtaactcccagcaaagcgagcaggtccac 4692088

                                                                           
Query: 251     cactcccatatctgtcaccattcgccacacgtggaccacccctgccataaccaccagttc 310
               |  |||| |||||||||||| || |||  ||    ||||| ||| ||||||||||||  |
Sbjct: 4692089 cggtcccgtatctgtcaccactccccatgcgcatgccacctctgtcataaccaccagagc 4692148

                                                                           
Query: 311     ctctaggttcatcacggtaataacttccacctggccgccctccatctctctcatagcttc 370
               |||||||||||||||| || ||||||||||| | ||| ||||||||||| ||||||||||
Sbjct: 4692149 ctctaggttcatcacgatagtaacttccaccggaccgtcctccatctctttcatagcttc 4692208

                                                                           
Query: 371     tttccctggcaaagccacctgatgcataacgatcaccaccaccatatctgtcgccagaaa 430
               ||||||||| ||| |||| ||||||||||||||||  ||||||||||||||| || | ||
Sbjct: 4692209 tttccctggtaaatccacttgatgcataacgatcagaaccaccatatctgtcacctgtaa 4692268

                                           
Query: 431     aacgatcagcagctggaggatagcgatc 458
               ||||||| |||| ||| |||||||||||
Sbjct: 4692269 aacgatcggcagttggtggatagcgatc 4692296



 Score =  155 bits (78), Expect = 2e-34
 Identities = 131/148 (88%), Gaps = 3/148 (2%)
 Strand = Plus / Plus

                                                                           
Query: 463     ccaccaccataacgatcatcggcatagcggccaccatcataacgatcatcaacatagcga 522
               ||||||||||| ||||||||  ||||||| ||||||||||| || |||||||||||||| 
Sbjct: 4692319 ccaccaccatagcgatcatcaacatagcgcccaccatcatatcggtcatcaacatagcgg 4692378

                                                                           
Query: 523     ttagcaaaacggtctgatcctccaaagcggtcaccacgcccaccagcg---ccattgaca 579
               |||||||||||||||||||||||||||||||||||||| |||||| |    ||| || ||
Sbjct: 4692379 ttagcaaaacggtctgatcctccaaagcggtcaccacgtccaccaccagttccactgcca 4692438

                                           
Query: 580     tacctggaagggggagagtaccttccag 607
               || ||||||||||| |||||||||||||
Sbjct: 4692439 tatctggaagggggtgagtaccttccag 4692466
to top
>dbj|AP005179.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0084L07
          Length = 127992

 Score =  214 bits (108), Expect = 3e-52
 Identities = 228/268 (85%)
 Strand = Plus / Plus

                                                                         
Query: 191   tgggccgatcatagggagcaggcctatctcggtaactcccgccaaggcgagcaggtccag 250
             |||| |||||||| || ||||||||||||| |||||||||  ||| ||||||||||||| 
Sbjct: 9939  tgggacgatcatatggggcaggcctatctctgtaactcccagcaaagcgagcaggtccac 9998

                                                                         
Query: 251   cactcccatatctgtcaccattcgccacacgtggaccacccctgccataaccaccagttc 310
             |  |||| |||||||||||| || |||  ||    ||||| ||| ||||||||||||  |
Sbjct: 9999  cggtcccgtatctgtcaccactccccatgcgcatgccacctctgtcataaccaccagagc 10058

                                                                         
Query: 311   ctctaggttcatcacggtaataacttccacctggccgccctccatctctctcatagcttc 370
             |||||||||||||||| || ||||||||||| | ||| ||||||||||| ||||||||||
Sbjct: 10059 ctctaggttcatcacgatagtaacttccaccggaccgtcctccatctctttcatagcttc 10118

                                                                         
Query: 371   tttccctggcaaagccacctgatgcataacgatcaccaccaccatatctgtcgccagaaa 430
             ||||||||| ||| |||| ||||||||||||||||  ||||||||||||||| || | ||
Sbjct: 10119 tttccctggtaaatccacttgatgcataacgatcagaaccaccatatctgtcacctgtaa 10178

                                         
Query: 431   aacgatcagcagctggaggatagcgatc 458
             ||||||| |||| ||| |||||||||||
Sbjct: 10179 aacgatcggcagttggtggatagcgatc 10206



 Score =  155 bits (78), Expect = 2e-34
 Identities = 131/148 (88%), Gaps = 3/148 (2%)
 Strand = Plus / Plus

                                                                         
Query: 463   ccaccaccataacgatcatcggcatagcggccaccatcataacgatcatcaacatagcga 522
             ||||||||||| ||||||||  ||||||| ||||||||||| || |||||||||||||| 
Sbjct: 10229 ccaccaccatagcgatcatcaacatagcgcccaccatcatatcggtcatcaacatagcgg 10288

                                                                         
Query: 523   ttagcaaaacggtctgatcctccaaagcggtcaccacgcccaccagcg---ccattgaca 579
             |||||||||||||||||||||||||||||||||||||| |||||| |    ||| || ||
Sbjct: 10289 ttagcaaaacggtctgatcctccaaagcggtcaccacgtccaccaccagttccactgcca 10348

                                         
Query: 580   tacctggaagggggagagtaccttccag 607
             || ||||||||||| |||||||||||||
Sbjct: 10349 tatctggaagggggtgagtaccttccag 10376
to top
>dbj|AK103069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117P16, full
            insert sequence
          Length = 1393

 Score =  214 bits (108), Expect = 3e-52
 Identities = 228/268 (85%)
 Strand = Plus / Minus

                                                                        
Query: 191  tgggccgatcatagggagcaggcctatctcggtaactcccgccaaggcgagcaggtccag 250
            |||| |||||||| || ||||||||||||| |||||||||  ||| ||||||||||||| 
Sbjct: 1037 tgggacgatcatatggggcaggcctatctctgtaactcccagcaaagcgagcaggtccac 978

                                                                        
Query: 251  cactcccatatctgtcaccattcgccacacgtggaccacccctgccataaccaccagttc 310
            |  |||| |||||||||||| || |||  ||    ||||| ||| ||||||||||||  |
Sbjct: 977  cggtcccgtatctgtcaccactccccatgcgcatgccacctctgtcataaccaccagagc 918

                                                                        
Query: 311  ctctaggttcatcacggtaataacttccacctggccgccctccatctctctcatagcttc 370
            |||||||||||||||| || ||||||||||| | ||| ||||||||||| ||||||||||
Sbjct: 917  ctctaggttcatcacgatagtaacttccaccggaccgtcctccatctctttcatagcttc 858

                                                                        
Query: 371  tttccctggcaaagccacctgatgcataacgatcaccaccaccatatctgtcgccagaaa 430
            ||||||||| ||| |||| ||||||||||||||||  ||||||||||||||| || | ||
Sbjct: 857  tttccctggtaaatccacttgatgcataacgatcagaaccaccatatctgtcacctgtaa 798

                                        
Query: 431  aacgatcagcagctggaggatagcgatc 458
            ||||||| |||| ||| |||||||||||
Sbjct: 797  aacgatcggcagttggtggatagcgatc 770



 Score =  155 bits (78), Expect = 2e-34
 Identities = 131/148 (88%), Gaps = 3/148 (2%)
 Strand = Plus / Minus

                                                                       
Query: 463 ccaccaccataacgatcatcggcatagcggccaccatcataacgatcatcaacatagcga 522
           ||||||||||| ||||||||  ||||||| ||||||||||| || |||||||||||||| 
Sbjct: 747 ccaccaccatagcgatcatcaacatagcgcccaccatcatatcggtcatcaacatagcgg 688

                                                                       
Query: 523 ttagcaaaacggtctgatcctccaaagcggtcaccacgcccaccagcg---ccattgaca 579
           |||||||||||||||||||||||||||||||||||||| |||||| |    ||| || ||
Sbjct: 687 ttagcaaaacggtctgatcctccaaagcggtcaccacgtccaccaccagttccactgcca 628

                                       
Query: 580 tacctggaagggggagagtaccttccag 607
           || ||||||||||| |||||||||||||
Sbjct: 627 tatctggaagggggtgagtaccttccag 600
to top
>dbj|AK059768.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H01, full
           insert sequence
          Length = 998

 Score =  214 bits (108), Expect = 3e-52
 Identities = 228/268 (85%)
 Strand = Plus / Minus

                                                                       
Query: 191 tgggccgatcatagggagcaggcctatctcggtaactcccgccaaggcgagcaggtccag 250
           |||| |||||||| || ||||||||||||| |||||||||  ||| ||||||||||||| 
Sbjct: 571 tgggacgatcatatggggcaggcctatctctgtaactcccagcaaagcgagcaggtccac 512

                                                                       
Query: 251 cactcccatatctgtcaccattcgccacacgtggaccacccctgccataaccaccagttc 310
           |  |||| |||||||||||| || |||  ||    ||||| ||| ||||||||||||  |
Sbjct: 511 cggtcccgtatctgtcaccactccccatgcgcatgccacctctgtcataaccaccagagc 452

                                                                       
Query: 311 ctctaggttcatcacggtaataacttccacctggccgccctccatctctctcatagcttc 370
           |||||||||||||||| || ||||||||||| | ||| ||||||||||| ||||||||||
Sbjct: 451 ctctaggttcatcacgatagtaacttccaccggaccgtcctccatctctttcatagcttc 392

                                                                       
Query: 371 tttccctggcaaagccacctgatgcataacgatcaccaccaccatatctgtcgccagaaa 430
           ||||||||| ||| |||| ||||||||||||||||  ||||||||||||||| || | ||
Sbjct: 391 tttccctggtaaatccacttgatgcataacgatcagaaccaccatatctgtcacctgtaa 332

                                       
Query: 431 aacgatcagcagctggaggatagcgatc 458
           ||||||| |||| ||| |||||||||||
Sbjct: 331 aacgatcggcagttggtggatagcgatc 304



 Score =  155 bits (78), Expect = 2e-34
 Identities = 131/148 (88%), Gaps = 3/148 (2%)
 Strand = Plus / Minus

                                                                       
Query: 463 ccaccaccataacgatcatcggcatagcggccaccatcataacgatcatcaacatagcga 522
           ||||||||||| ||||||||  ||||||| ||||||||||| || |||||||||||||| 
Sbjct: 281 ccaccaccatagcgatcatcaacatagcgcccaccatcatatcggtcatcaacatagcgg 222

                                                                       
Query: 523 ttagcaaaacggtctgatcctccaaagcggtcaccacgcccaccagcg---ccattgaca 579
           |||||||||||||||||||||||||||||||||||||| |||||| |    ||| || ||
Sbjct: 221 ttagcaaaacggtctgatcctccaaagcggtcaccacgtccaccaccagttccactgcca 162

                                       
Query: 580 tacctggaagggggagagtaccttccag 607
           || ||||||||||| |||||||||||||
Sbjct: 161 tatctggaagggggtgagtaccttccag 134
to top
>dbj|AP004384.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0506C07
          Length = 123451

 Score =  214 bits (108), Expect = 3e-52
 Identities = 228/268 (85%)
 Strand = Plus / Plus

                                                                         
Query: 191   tgggccgatcatagggagcaggcctatctcggtaactcccgccaaggcgagcaggtccag 250
             |||| |||||||| || ||||||||||||| |||||||||  ||| ||||||||||||| 
Sbjct: 99402 tgggacgatcatatggggcaggcctatctctgtaactcccagcaaagcgagcaggtccac 99461

                                                                         
Query: 251   cactcccatatctgtcaccattcgccacacgtggaccacccctgccataaccaccagttc 310
             |  |||| |||||||||||| || |||  ||    ||||| ||| ||||||||||||  |
Sbjct: 99462 cggtcccgtatctgtcaccactccccatgcgcatgccacctctgtcataaccaccagagc 99521

                                                                         
Query: 311   ctctaggttcatcacggtaataacttccacctggccgccctccatctctctcatagcttc 370
             |||||||||||||||| || ||||||||||| | ||| ||||||||||| ||||||||||
Sbjct: 99522 ctctaggttcatcacgatagtaacttccaccggaccgtcctccatctctttcatagcttc 99581

                                                                         
Query: 371   tttccctggcaaagccacctgatgcataacgatcaccaccaccatatctgtcgccagaaa 430
             ||||||||| ||| |||| ||||||||||||||||  ||||||||||||||| || | ||
Sbjct: 99582 tttccctggtaaatccacttgatgcataacgatcagaaccaccatatctgtcacctgtaa 99641

                                         
Query: 431   aacgatcagcagctggaggatagcgatc 458
             ||||||| |||| ||| |||||||||||
Sbjct: 99642 aacgatcggcagttggtggatagcgatc 99669



 Score =  155 bits (78), Expect = 2e-34
 Identities = 131/148 (88%), Gaps = 3/148 (2%)
 Strand = Plus / Plus

                                                                         
Query: 463   ccaccaccataacgatcatcggcatagcggccaccatcataacgatcatcaacatagcga 522
             ||||||||||| ||||||||  ||||||| ||||||||||| || |||||||||||||| 
Sbjct: 99692 ccaccaccatagcgatcatcaacatagcgcccaccatcatatcggtcatcaacatagcgg 99751

                                                                         
Query: 523   ttagcaaaacggtctgatcctccaaagcggtcaccacgcccaccagcg---ccattgaca 579
             |||||||||||||||||||||||||||||||||||||| |||||| |    ||| || ||
Sbjct: 99752 ttagcaaaacggtctgatcctccaaagcggtcaccacgtccaccaccagttccactgcca 99811

                                         
Query: 580   tacctggaagggggagagtaccttccag 607
             || ||||||||||| |||||||||||||
Sbjct: 99812 tatctggaagggggtgagtaccttccag 99839
to top
>gb|AY104821.1| Zea mays PCO118715 mRNA sequence
          Length = 857

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 105/123 (85%), Gaps = 3/123 (2%)
 Strand = Plus / Minus

                                                                       
Query: 485 catagcggccaccatcataacgatcatcaacatagcgattagcaaaacggtctgatcctc 544
           ||||||| ||||||||||| ||||||||| ||||||||   |||||||| ||||||||||
Sbjct: 658 catagcgcccaccatcatatcgatcatcatcatagcga---gcaaaacgatctgatcctc 602

                                                                       
Query: 545 caaagcggtcaccacgcccaccagcgccattgacatacctggaagggggagagtaccttc 604
           ||||||| |||||||| ||||||| ||||    ||||||| |||  |||||| |||||||
Sbjct: 601 caaagcgatcaccacgtccaccagtgccaccaccataccttgaaccgggagaataccttc 542

              
Query: 605 cag 607
           |||
Sbjct: 541 cag 539



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                       
Query: 295 ccataaccaccagttcctctaggttcatcacggtaataacttccacctggccgccctcca 354
           ||||| |||||||| || || | |||||||||||| |||| ||||   | || |||| ||
Sbjct: 857 ccatagccaccagtgcccctcgtttcatcacggtagtaacctccattggacctccctaca 798

                                           
Query: 355 tctctctcatagcttctttccctggcaaagcc 386
           |||||||||||||| ||||| |||||||||||
Sbjct: 797 tctctctcatagctcctttctctggcaaagcc 766
to top
>gb|AY106483.1| Zea mays PCO145034 mRNA sequence
          Length = 1197

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 485 catagcggccaccatcataacgatcatc 512
           ||||||| ||||||||||||||||||||
Sbjct: 622 catagcgaccaccatcataacgatcatc 595



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 350 ctccatctctctcatagcttctttc 374
           ||||||||||||| |||||||||||
Sbjct: 802 ctccatctctctcgtagcttctttc 778
to top
>gb|AC096540.2| Homo sapiens chromosome 1 clone RP11-223A3, complete sequence
          Length = 168357

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 401  gatcaccaccaccatatctgtc 422
            ||||||||||||||||||||||
Sbjct: 5284 gatcaccaccaccatatctgtc 5263
to top
>tpg|BK005065.1| TPA: TPA_inf: Oryza sativa (indica cultivar-group) WRKY
           transcription factor 62 (WRKY62) gene, complete cds
          Length = 1463

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 550 cggtcaccacgcccaccagcgc 571
           ||||||||||||||||||||||
Sbjct: 48  cggtcaccacgcccaccagcgc 69
to top
>gb|DQ298182.1| Oryza sativa (japonica cultivar-group) WRKY transcription factor 62
           mRNA, complete cds
          Length = 1323

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 550 cggtcaccacgcccaccagcgc 571
           ||||||||||||||||||||||
Sbjct: 383 cggtcaccacgcccaccagcgc 404
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 550      cggtcaccacgcccaccagcgc 571
                ||||||||||||||||||||||
Sbjct: 14939812 cggtcaccacgcccaccagcgc 14939791
to top
>dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0014G10
          Length = 164147

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 550    cggtcaccacgcccaccagcgc 571
              ||||||||||||||||||||||
Sbjct: 148151 cggtcaccacgcccaccagcgc 148130
to top
>dbj|AP005429.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
            clone:P0701F11
          Length = 154950

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 550  cggtcaccacgcccaccagcgc 571
            ||||||||||||||||||||||
Sbjct: 9258 cggtcaccacgcccaccagcgc 9237
to top
>dbj|AK067834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121C08, full
           insert sequence
          Length = 1192

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 550 cggtcaccacgcccaccagcgc 571
           ||||||||||||||||||||||
Sbjct: 294 cggtcaccacgcccaccagcgc 315
to top
>gb|AC079799.7| Homo sapiens BAC clone RP11-665O4 from 7, complete sequence
          Length = 172495

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 30  taaaaactaaaagaatgatac 50
           |||||||||||||||||||||
Sbjct: 84  taaaaactaaaagaatgatac 104
to top
>gb|AC004027.1| Homo sapiens PAC clone RP4-791I21 from 7, complete sequence
          Length = 133191

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 30    taaaaactaaaagaatgatac 50
             |||||||||||||||||||||
Sbjct: 77090 taaaaactaaaagaatgatac 77070
to top
>gb|BT010003.1| Drosophila melanogaster RE30195 full insert cDNA
          Length = 6124

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 238  cgagcaggtccagcactccca 258
            |||||||||||||||||||||
Sbjct: 1882 cgagcaggtccagcactccca 1862
to top
>emb|Y08160.1|DMDIDUMGE D.melanogaster mRNA for gene involved in oogenesis, partial
          Length = 6006

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 238  cgagcaggtccagcactccca 258
            |||||||||||||||||||||
Sbjct: 1419 cgagcaggtccagcactccca 1399
to top
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 553   tcaccacgcccaccagcgcca 573
             |||||||||||||||||||||
Sbjct: 46552 tcaccacgcccaccagcgcca 46572
to top
>ref|NM_165536.1| Drosophila melanogaster dilute class unconventional myosin CG2146-RB,
            transcript variant B (didum), mRNA
          Length = 6372

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 238  cgagcaggtccagcactccca 258
            |||||||||||||||||||||
Sbjct: 1882 cgagcaggtccagcactccca 1862
to top
>ref|NM_165535.1| Drosophila melanogaster dilute class unconventional myosin CG2146-RC,
            transcript variant C (didum), mRNA
          Length = 6494

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 238  cgagcaggtccagcactccca 258
            |||||||||||||||||||||
Sbjct: 1882 cgagcaggtccagcactccca 1862
to top
>ref|NM_057838.3| Drosophila melanogaster dilute class unconventional myosin CG2146-RA,
            transcript variant A (didum), mRNA
          Length = 6470

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 238  cgagcaggtccagcactccca 258
            |||||||||||||||||||||
Sbjct: 1882 cgagcaggtccagcactccca 1862
to top
>gb|AC008258.4|AC008258 Drosophila melanogaster, chromosome 2R, region 43C-43C, BAC clone
             BACR04G20, complete sequence
          Length = 184079

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 238   cgagcaggtccagcactccca 258
             |||||||||||||||||||||
Sbjct: 96270 cgagcaggtccagcactccca 96250
to top
>gb|AC007741.4| Homo sapiens BAC clone RP11-340F16 from 2, complete sequence
          Length = 123295

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 349    cctccatctctctcatagcttcttt 373
              ||||||| |||||||||||||||||
Sbjct: 107380 cctccatgtctctcatagcttcttt 107404
to top
>gb|AE003841.5| Drosophila melanogaster chromosome 2R, section 9 of 73 of the complete
              sequence
          Length = 266427

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 238    cgagcaggtccagcactccca 258
              |||||||||||||||||||||
Sbjct: 252534 cgagcaggtccagcactccca 252514
to top
>gb|AF003826.1|AF003826 Drosophila melanogaster myosin V mRNA, complete cds
          Length = 6214

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 238  cgagcaggtccagcactccca 258
            |||||||||||||||||||||
Sbjct: 1628 cgagcaggtccagcactccca 1608
to top
>gb|AC004280.1|AC004280 Drosophila melanogaster DNA sequence (P1 DS01142 (D148)), complete
             sequence
          Length = 78174

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 238   cgagcaggtccagcactccca 258
             |||||||||||||||||||||
Sbjct: 60600 cgagcaggtccagcactccca 60580
to top
>ref|XM_469309.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1168

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 493 ccaccatcataacgatcatc 512
           ||||||||||||||||||||
Sbjct: 589 ccaccatcataacgatcatc 570
to top
>gb|AC101802.9| Mus musculus chromosome 1, clone RP24-221A4, complete sequence
          Length = 166975

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 350   ctccatctctctcatag-cttctttccctggc 380
             ||||||||||||| ||| ||||||||||||||
Sbjct: 31804 ctccatctctctcctagccttctttccctggc 31773
to top
>gb|AE017132.1| Yersinia pestis biovar Medievalis str. 91001 section 6 of 16 of the
              complete genome
          Length = 290155

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 508    tcatcaacatagcgattagc 527
              ||||||||||||||||||||
Sbjct: 103858 tcatcaacatagcgattagc 103877
to top
>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 508     tcatcaacatagcgattagc 527
               ||||||||||||||||||||
Sbjct: 2919770 tcatcaacatagcgattagc 2919751
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 493      ccaccatcataacgatcatc 512
                ||||||||||||||||||||
Sbjct: 26843825 ccaccatcataacgatcatc 26843844
to top
>emb|AL121911.15|HSDJ989D7 Human DNA sequence from clone RP5-989D7 on chromosome 20 Contains part of
              a novel gene, complete sequence
          Length = 119790

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     agtactaaaaactaaaagaa 44
              ||||||||||||||||||||
Sbjct: 105737 agtactaaaaactaaaagaa 105718
to top
>gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 genomic sequence, complete
             sequence
          Length = 149303

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   ccaccatcataacgatcatc 512
             ||||||||||||||||||||
Sbjct: 22825 ccaccatcataacgatcatc 22844
to top
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 508     tcatcaacatagcgattagc 527
               ||||||||||||||||||||
Sbjct: 1845193 tcatcaacatagcgattagc 1845212
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 54      agagttgaagcatcaacata 73
               ||||||||||||||||||||
Sbjct: 4266586 agagttgaagcatcaacata 4266567
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 493      ccaccatcataacgatcatc 512
                ||||||||||||||||||||
Sbjct: 26935148 ccaccatcataacgatcatc 26935167
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 30       taaaaactaaaagaatgata 49
                ||||||||||||||||||||
Sbjct: 19388259 taaaaactaaaagaatgata 19388278
to top
>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0476H10
          Length = 151703

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 30   taaaaactaaaagaatgata 49
            ||||||||||||||||||||
Sbjct: 5786 taaaaactaaaagaatgata 5805
to top
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0554A06
          Length = 165311

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     agagttgaagcatcaacata 73
              ||||||||||||||||||||
Sbjct: 111807 agagttgaagcatcaacata 111788
to top
>dbj|AP004879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0475F05
          Length = 147522

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    taaaaactaaaagaatgata 49
             ||||||||||||||||||||
Sbjct: 73750 taaaaactaaaagaatgata 73769
to top
>dbj|AK062094.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-H07, full
           insert sequence
          Length = 1592

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 493 ccaccatcataacgatcatc 512
           ||||||||||||||||||||
Sbjct: 573 ccaccatcataacgatcatc 554
to top
>dbj|AK061750.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-G09, full
           insert sequence
          Length = 1154

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 493 ccaccatcataacgatcatc 512
           ||||||||||||||||||||
Sbjct: 575 ccaccatcataacgatcatc 556
to top
>gb|AY111928.1| Zea mays CL3440_1 mRNA sequence
          Length = 1170

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 493 ccaccatcataacgatcatc 512
           ||||||||||||||||||||
Sbjct: 737 ccaccatcataacgatcatc 756
to top
>gb|AC148202.3| Carollia perspicillata clone 598J23, complete sequence
          Length = 130753

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    aaactaaaagaatgatactt 52
             ||||||||||||||||||||
Sbjct: 21858 aaactaaaagaatgatactt 21839
to top
>emb|AJ414148.1| Yersinia pestis strain CO92 complete genome; segment 8/20
          Length = 210050

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 508    tcatcaacatagcgattagc 527
              ||||||||||||||||||||
Sbjct: 201838 tcatcaacatagcgattagc 201857
to top
>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold
          Length = 1501503

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 33      aaactaaaagaatgatactt 52
               ||||||||||||||||||||
Sbjct: 1181573 aaactaaaagaatgatactt 1181554


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,038,467
Number of Sequences: 3902068
Number of extensions: 5038467
Number of successful extensions: 93757
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 93331
Number of HSP's gapped (non-prelim): 418
length of query: 607
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 584
effective length of database: 17,143,297,704
effective search space: 10011685859136
effective search space used: 10011685859136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top