ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags32b02 |
|---|---|
| Clone Library Name | barley_pub |
>RL22B_ARATH (Q9M9W1) 60S ribosomal protein L22-2| Length = 124 Score = 149 bits (377), Expect = 3e-36 Identities = 77/102 (75%), Positives = 85/102 (83%) Frame = -3 Query: 421 KPVDDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVARDKSKVTVTSDGAFSXXXXXXX 242 KPVDDKIMEIASLEKFLQERIKV GGKAG LGDSVT+ R+KSK+TVT+DG FS Sbjct: 24 KPVDDKIMEIASLEKFLQERIKV-GGKAGALGDSVTITREKSKITVTADGQFSKRYLKYL 82 Query: 241 XXXXXXKHNVRDWLRVISSNKDRSVYELRYFNIAENEGEEED 116 KHNVRDWLRVI++NKDR++YELRYFNIAENEGEEED Sbjct: 83 TKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEGEEED 124
>RL22C_ARATH (Q9FE58) 60S ribosomal protein L22-3| Length = 124 Score = 145 bits (367), Expect = 4e-35 Identities = 75/102 (73%), Positives = 84/102 (82%) Frame = -3 Query: 421 KPVDDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVARDKSKVTVTSDGAFSXXXXXXX 242 KPVDDKIMEIASLEKFLQERIKV GGKAG LGDSV++ R+KSK+TVT+DG FS Sbjct: 24 KPVDDKIMEIASLEKFLQERIKV-GGKAGALGDSVSITREKSKITVTADGQFSKRYLKYL 82 Query: 241 XXXXXXKHNVRDWLRVISSNKDRSVYELRYFNIAENEGEEED 116 KHNVRDWLRVI++NKDR++YELRYFNIAENE EEED Sbjct: 83 TKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEAEEED 124
>RL22A_ARATH (Q9SRX7) 60S ribosomal protein L22-1| Length = 127 Score = 102 bits (254), Expect(2) = 1e-24 Identities = 54/102 (52%), Positives = 70/102 (68%) Frame = -3 Query: 421 KPVDDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVARDKSKVTVTSDGAFSXXXXXXX 242 KPVDD I+EIA+LEKFLQERIKV G KAG LG+SV++ R K+ V ++ FS Sbjct: 26 KPVDDTILEIATLEKFLQERIKVRG-KAGALGNSVSITRYNGKINVNANSNFSKRYLKYL 84 Query: 241 XXXXXXKHNVRDWLRVISSNKDRSVYELRYFNIAENEGEEED 116 K+N+RDWLRVI+SNKD++VYE+RYF I + E+ Sbjct: 85 TKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDEVASYEE 126 Score = 29.3 bits (64), Expect(2) = 1e-24 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -2 Query: 473 AGAGKKKGSVTFVIDCTK 420 +GAG KK V+FVIDC+K Sbjct: 9 SGAGAKKKGVSFVIDCSK 26
>RL22_RAT (P47198) 60S ribosomal protein L22| Length = 127 Score = 97.1 bits (240), Expect(2) = 1e-20 Identities = 55/102 (53%), Positives = 71/102 (69%), Gaps = 1/102 (0%) Frame = -3 Query: 418 PVDDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVARDKSKVTVTSDGAFSXXXXXXX 242 PV+D IM+ A+ E+FLQERIKV GKAGNLG V T+ R KSK+TVTS+ FS Sbjct: 27 PVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEEPFSKRYLKYL 85 Query: 241 XXXXXXKHNVRDWLRVISSNKDRSVYELRYFNIAENEGEEED 116 K+N+RDWLRV++++K+ YELRYF I ++E EEED Sbjct: 86 TKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125 Score = 21.2 bits (43), Expect(2) = 1e-20 Identities = 8/16 (50%), Positives = 10/16 (62%) Frame = -2 Query: 470 GAGKKKGSVTFVIDCT 423 G KKK + F +DCT Sbjct: 10 GGKKKKQVLKFTLDCT 25
>RL22_PIG (P67985) 60S ribosomal protein L22 (Heparin-binding protein HBp15)| Length = 127 Score = 96.7 bits (239), Expect(2) = 2e-20 Identities = 55/102 (53%), Positives = 71/102 (69%), Gaps = 1/102 (0%) Frame = -3 Query: 418 PVDDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVARDKSKVTVTSDGAFSXXXXXXX 242 PV+D IM+ A+ E+FLQERIKV GKAGNLG V T+ R KSK+TVTS+ FS Sbjct: 27 PVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYL 85 Query: 241 XXXXXXKHNVRDWLRVISSNKDRSVYELRYFNIAENEGEEED 116 K+N+RDWLRV++++K+ YELRYF I ++E EEED Sbjct: 86 TKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125 Score = 21.2 bits (43), Expect(2) = 2e-20 Identities = 8/16 (50%), Positives = 10/16 (62%) Frame = -2 Query: 470 GAGKKKGSVTFVIDCT 423 G KKK + F +DCT Sbjct: 10 GGKKKKQVLKFTLDCT 25
>RL22_MOUSE (P67984) 60S ribosomal protein L22 (Heparin-binding protein HBp15)| Length = 127 Score = 96.7 bits (239), Expect(2) = 2e-20 Identities = 55/102 (53%), Positives = 71/102 (69%), Gaps = 1/102 (0%) Frame = -3 Query: 418 PVDDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVARDKSKVTVTSDGAFSXXXXXXX 242 PV+D IM+ A+ E+FLQERIKV GKAGNLG V T+ R KSK+TVTS+ FS Sbjct: 27 PVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYL 85 Query: 241 XXXXXXKHNVRDWLRVISSNKDRSVYELRYFNIAENEGEEED 116 K+N+RDWLRV++++K+ YELRYF I ++E EEED Sbjct: 86 TKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125 Score = 21.2 bits (43), Expect(2) = 2e-20 Identities = 8/16 (50%), Positives = 10/16 (62%) Frame = -2 Query: 470 GAGKKKGSVTFVIDCT 423 G KKK + F +DCT Sbjct: 10 GGKKKKQVLKFTLDCT 25
>RL22_HUMAN (P35268) 60S ribosomal protein L22 (Epstein-Barr virus small| RNA-associated protein) (EBER-associated protein) (EAP) (Heparin-binding protein HBp15) Length = 127 Score = 96.7 bits (239), Expect(2) = 2e-20 Identities = 55/102 (53%), Positives = 71/102 (69%), Gaps = 1/102 (0%) Frame = -3 Query: 418 PVDDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVARDKSKVTVTSDGAFSXXXXXXX 242 PV+D IM+ A+ E+FLQERIKV GKAGNLG V T+ R KSK+TVTS+ FS Sbjct: 27 PVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYL 85 Query: 241 XXXXXXKHNVRDWLRVISSNKDRSVYELRYFNIAENEGEEED 116 K+N+RDWLRV++++K+ YELRYF I ++E EEED Sbjct: 86 TKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125 Score = 21.2 bits (43), Expect(2) = 2e-20 Identities = 8/16 (50%), Positives = 10/16 (62%) Frame = -2 Query: 470 GAGKKKGSVTFVIDCT 423 G KKK + F +DCT Sbjct: 10 GGKKKKQVLKFTLDCT 25
>RL22_TRIGR (P13732) 60S ribosomal protein L22 (Development-specific protein| 217) Length = 130 Score = 92.8 bits (229), Expect(2) = 2e-19 Identities = 51/101 (50%), Positives = 69/101 (68%) Frame = -3 Query: 418 PVDDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVARDKSKVTVTSDGAFSXXXXXXXX 239 PV+D IM+ ++ E+FLQERIKV GK NL ++ + R KSKVTVTS+ AFS Sbjct: 32 PVEDGIMDASNFEQFLQERIKV-NGKTKNLTTNIVIERKKSKVTVTSEIAFSKRYLKYLT 90 Query: 238 XXXXXKHNVRDWLRVISSNKDRSVYELRYFNIAENEGEEED 116 K+N+RDWLRV+++NK+ YELRYF I +++ EEED Sbjct: 91 KKYLKKNNLRDWLRVVAANKES--YELRYFQINQDDEEEED 129 Score = 21.6 bits (44), Expect(2) = 2e-19 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = -2 Query: 461 KKKGSVTFVIDCT 423 KKK ++ F IDCT Sbjct: 18 KKKQTLKFTIDCT 30
>RL22_XENLA (P50886) 60S ribosomal protein L22| Length = 127 Score = 89.0 bits (219), Expect(2) = 3e-18 Identities = 50/102 (49%), Positives = 69/102 (67%), Gaps = 1/102 (0%) Frame = -3 Query: 418 PVDDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVARDKSKVTVTSDGAFSXXXXXXX 242 PV+D IM+ A+ E+FL +RIKV GK GNLG V ++ R KSK+TV+S+ FS Sbjct: 27 PVEDGIMDAANFEQFLHDRIKV-NGKVGNLGGGVVSIERSKSKITVSSEVPFSKRYLKYL 85 Query: 241 XXXXXXKHNVRDWLRVISSNKDRSVYELRYFNIAENEGEEED 116 K+N+RDWLRV++++K+ YELRYF I ++E EEED Sbjct: 86 TKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125 Score = 21.6 bits (44), Expect(2) = 3e-18 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -2 Query: 470 GAGKKKGSVTFVIDCT 423 G+ KKK + F +DCT Sbjct: 10 GSKKKKQLLKFTLDCT 25
>RL22_DROME (P50887) 60S ribosomal protein L22| Length = 299 Score = 82.0 bits (201), Expect(2) = 8e-17 Identities = 42/99 (42%), Positives = 64/99 (64%) Frame = -3 Query: 412 DDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVARDKSKVTVTSDGAFSXXXXXXXXXX 233 +D IM++A EK+++ R+KV GK NLG++VT R K K+ V+SD FS Sbjct: 202 EDSIMDVADFEKYIKARLKV-NGKVNNLGNNVTFERSKLKLIVSSDVHFSKAYLKYLTKK 260 Query: 232 XXXKHNVRDWLRVISSNKDRSVYELRYFNIAENEGEEED 116 K+++RDW+RV+++ KD YELRYF I+ N+ E++D Sbjct: 261 YLKKNSLRDWIRVVANEKDS--YELRYFRISSNDDEDDD 297 Score = 23.5 bits (49), Expect(2) = 8e-17 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = -2 Query: 470 GAGKKKGSVTFVIDCT 423 G KKK S+ F IDCT Sbjct: 183 GQKKKKVSLRFTIDCT 198
>RL22_GADMO (P52865) 60S ribosomal protein L22 (Fragment)| Length = 124 Score = 82.0 bits (201), Expect(2) = 4e-16 Identities = 47/99 (47%), Positives = 66/99 (66%), Gaps = 1/99 (1%) Frame = -3 Query: 418 PVDDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVARDKSKVTVTSDGAFSXXXXXXX 242 PV+D IM+ A+ E+FLQERIKV GK+GNLG+ V ++ R SK++V S+ FS Sbjct: 24 PVEDGIMDAANFEQFLQERIKV-NGKSGNLGNGVVSIERXXSKISVNSEVPFSKRYLKYL 82 Query: 241 XXXXXXKHNVRDWLRVISSNKDRSVYELRYFNIAENEGE 125 K+N+RDWLRV+++ K+ YELRYF I ++E E Sbjct: 83 TKKYLKKNNLRDWLRVVANTKES--YELRYFQINQDEEE 119 Score = 21.2 bits (43), Expect(2) = 4e-16 Identities = 8/16 (50%), Positives = 10/16 (62%) Frame = -2 Query: 470 GAGKKKGSVTFVIDCT 423 G KKK + F +DCT Sbjct: 7 GGKKKKQILKFTLDCT 22
>RL22_SCHPO (Q09668) 60S ribosomal protein L22| Length = 117 Score = 81.3 bits (199), Expect = 1e-15 Identities = 47/100 (47%), Positives = 63/100 (63%), Gaps = 1/100 (1%) Frame = -3 Query: 415 VDDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVARD-KSKVTVTSDGAFSXXXXXXXX 239 V+DKI ++A+ EK+L +RIKV GK GNLG SV V+R+ SK+ V + FS Sbjct: 20 VNDKIFDVAAFEKYLIDRIKV-DGKTGNLGSSVVVSREGSSKIAVIAHIDFSGRYLKYLT 78 Query: 238 XXXXXKHNVRDWLRVISSNKDRSVYELRYFNIAENEGEEE 119 KH++RDWLRV+S+ K VYELRY+N+ EEE Sbjct: 79 KKFLKKHSLRDWLRVVSTKK--GVYELRYYNVVVGNDEEE 116
>RL22_CAEEL (P52819) 60S ribosomal protein L22| Length = 130 Score = 70.1 bits (170), Expect = 3e-12 Identities = 44/100 (44%), Positives = 63/100 (63%), Gaps = 1/100 (1%) Frame = -3 Query: 418 PVDDKIMEIASLEKFLQERIKVAGGKAGNLG-DSVTVARDKSKVTVTSDGAFSXXXXXXX 242 PV+D I+ I LE FL E+IKV GK G+L ++V V KSKV+V S+ FS Sbjct: 30 PVEDGILRIEDLEAFLNEKIKV-NGKTGHLAANNVKVEVAKSKVSVVSEVPFSKRYLKYL 88 Query: 241 XXXXXXKHNVRDWLRVISSNKDRSVYELRYFNIAENEGEE 122 ++++RDWLRV++ NK + YE+RYF+I N+GE+ Sbjct: 89 TKKYLKRNSLRDWLRVVAVNK--NTYEVRYFHI--NDGED 124
>RL22A_YEAST (P05749) 60S ribosomal protein L22-A (YL31) (RP4)| Length = 120 Score = 63.5 bits (153), Expect = 3e-10 Identities = 36/101 (35%), Positives = 54/101 (53%) Frame = -3 Query: 418 PVDDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVARDKSKVTVTSDGAFSXXXXXXXX 239 P ++ + + AS K+L + IKV G GNLG++VTV D + VTV S FS Sbjct: 21 PTENGVFDPASYAKYLIDHIKVEGA-VGNLGNAVTVTEDGTVVTVVSTAKFSGKYLKYLT 79 Query: 238 XXXXXKHNVRDWLRVISSNKDRSVYELRYFNIAENEGEEED 116 K+ +RDW+R +S+ + Y L ++ + E EEED Sbjct: 80 KKYLKKNQLRDWIRFVSTKTNE--YRLAFYQVTPEEDEEED 118
>RL22B_YEAST (P56628) 60S ribosomal protein L22-B| Length = 121 Score = 58.2 bits (139), Expect = 1e-08 Identities = 32/101 (31%), Positives = 55/101 (54%) Frame = -3 Query: 418 PVDDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVARDKSKVTVTSDGAFSXXXXXXXX 239 P ++ + + AS K+L + IKV G GNLG+++ V D S VTV S FS Sbjct: 21 PTENGVFDPASYSKYLIDHIKVDGA-VGNLGNAIEVTEDGSIVTVVSSAKFSGKYLKYLT 79 Query: 238 XXXXXKHNVRDWLRVISSNKDRSVYELRYFNIAENEGEEED 116 K+ +RDW+R +S +++ Y+L ++ + + +EE+ Sbjct: 80 KKYLKKNQLRDWIRFVSIRQNQ--YKLVFYQVTPEDADEEE 118
>CLF_ARATH (P93831) Polycomb group protein CURLY LEAF (Protein INCURVATA 1)| (Protein photoperiod insensitive flowering) (Protein SET DOMAIN GROUP 1) Length = 902 Score = 29.3 bits (64), Expect = 5.4 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Frame = +1 Query: 52 PQKCSNKFKVSHDTETRQCISNXXXXXXSQQC*STGARRRCDP-----CWTKSPEAS 207 P+ C N+F+ H ++ QC S+QC A R CDP CW + S Sbjct: 681 PKSCKNRFRGCHCAKS-QC--------RSRQCPCFAADRECDPDVCRNCWVIGGDGS 728
>EZ3_MAIZE (Q8S4P4) Polycomb protein EZ3 (Enhancer of zeste protein 3)| Length = 895 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%) Frame = +1 Query: 55 QKCSNKFKVSHDTETRQCISNXXXXXXSQQC*STGARRRCDP-----CWTKSPEAS 207 + C NKF+ H ++ QC S+QC A R CDP CW + S Sbjct: 677 KSCKNKFRGCHCAKS-QC--------RSRQCPCFAASRECDPDVCRNCWVSCGDGS 723
>DLG5_HUMAN (Q8TDM6) Discs large homolog 5 (Placenta and prostate DLG) (Discs| large protein P-dlg) Length = 1809 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/41 (43%), Positives = 20/41 (48%) Frame = +3 Query: 336 PALPPATLMRSCRNFSSDAISMILSSTGFGAVDHEGDRPLL 458 P P+ RS +F SDA GFG VD G RPLL Sbjct: 771 PQACPSASERSLSSFRSDASG----DRGFGLVDVRGRRPLL 807
>EZ2_MAIZE (Q8S4P5) Polycomb protein EZ2 (Enhancer of zeste protein 2)| Length = 894 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%) Frame = +1 Query: 55 QKCSNKFKVSHDTETRQCISNXXXXXXSQQC*STGARRRCDP-----CWTKSPEAS 207 + C NKF+ H ++ QC S+QC A R CDP CW + S Sbjct: 676 KSCKNKFRGCHCAKS-QC--------RSRQCPCFAASRECDPDVCRNCWVSCGDGS 722 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,970,035 Number of Sequences: 219361 Number of extensions: 741393 Number of successful extensions: 2162 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2113 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2144 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
