ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32a15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YS76_CAEEL (Q09619) Hypothetical protein ZK892.6 31 4.0
2MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich p... 30 8.8

>YS76_CAEEL (Q09619) Hypothetical protein ZK892.6|
          Length = 237

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 369 NLNGEHFSFHFSQLTHPIYELRPKTC 292
           NLN  H   H   +THPI++ R  TC
Sbjct: 212 NLNINHQESHLQDVTHPIFKKRSSTC 237



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>MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich protein|
          Length = 145

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 466 LRESPICSKGKLCTLPSVNCTSAVCDCRMSLNC 564
           L++SP C K   C   S  CT  VC C     C
Sbjct: 29  LQKSPCCPKSPCCPPKSPCCTPKVCPCPTPCPC 61


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,789,993
Number of Sequences: 219361
Number of extensions: 2059081
Number of successful extensions: 4552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4550
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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