ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags31l15 |
|---|---|
| Clone Library Name | barley_pub |
>CB004_MOUSE (Q91VH6) Protein C2orf4 homolog| Length = 297 Score = 145 bits (367), Expect = 8e-35 Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 3/128 (2%) Frame = -3 Query: 622 LVGAVNSQSEAMYGQLLAKYVDDPKNFFSVSSDFCHWGSRFSYTYYDKNHGAIHKSIEAL 443 LVGA++ E +G+L +KY+ DP N F VSSDFCHWG RF Y+YYD++ G I++SIE L Sbjct: 157 LVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHL 216 Query: 442 DRMGMEIIETGDPDAFKQYLQEYENTICGRHPISVLLHMLKHCL---TKIKVGFVRYEQS 272 D+MGM IIE DP +F YL++Y NTICGRHPI VLL+ + + F+ Y QS Sbjct: 217 DKMGMSIIEQLDPVSFSNYLKKYHNTICGRHPIGVLLNAITELQKNGMNMSFSFLNYAQS 276 Query: 271 SQCKSMRD 248 SQC+S +D Sbjct: 277 SQCRSWQD 284
>CB004_HUMAN (Q9Y316) Protein C2orf4 (C21orf19-like protein)| Length = 297 Score = 144 bits (364), Expect = 2e-34 Identities = 67/128 (52%), Positives = 89/128 (69%), Gaps = 3/128 (2%) Frame = -3 Query: 622 LVGAVNSQSEAMYGQLLAKYVDDPKNFFSVSSDFCHWGSRFSYTYYDKNHGAIHKSIEAL 443 LVGA++ E +G+L +KY+ DP N F VSSDFCHWG RF Y+YYD++ G I++SIE L Sbjct: 157 LVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHL 216 Query: 442 DRMGMEIIETGDPDAFKQYLQEYENTICGRHPISVLLHMLKHCL---TKIKVGFVRYEQS 272 D+MGM IIE DP +F YL++Y NTICGRHPI VLL+ + + F+ Y QS Sbjct: 217 DKMGMSIIEQLDPVSFSNYLKKYHNTICGRHPIGVLLNAITELQKNGMNMSFSFLNYAQS 276 Query: 271 SQCKSMRD 248 SQC++ +D Sbjct: 277 SQCRNWQD 284
>YC4P_CAEEL (Q22915) Hypothetical UPF0103 protein C37C3.8 in chromosome V| Length = 350 Score = 110 bits (275), Expect = 4e-24 Identities = 53/130 (40%), Positives = 82/130 (63%), Gaps = 5/130 (3%) Frame = -3 Query: 622 LVGAVNSQSEAMYGQLLAKYVDDPKNFFSVSSDFCHWGSRFSYTYYDKNHG-AIHKSIEA 446 LVG++ + YG + A Y++DP+N F +SSDFCHWG RFS++ YD++ I++ I Sbjct: 206 LVGSLPGSRQQTYGNIFAHYMEDPRNLFVISSDFCHWGERFSFSPYDRHSSIPIYEQITN 265 Query: 445 LDRMGMEIIETGDPDAFKQYLQEYENTICGRHPISVLLHMLKHCLTK----IKVGFVRYE 278 +D+ GM IET +P AF YL++ +NTICGR+PI ++L +H + F+ Y Sbjct: 266 MDKQGMSAIETLNPAAFNDYLKKTQNTICGRNPILIMLQAAEHFRISNNHTHEFRFLHYT 325 Query: 277 QSSQCKSMRD 248 QS++ +S D Sbjct: 326 QSNKVRSSVD 335
>YAY4_SCHPO (Q10212) Hypothetical UPF0103 protein C4H3.04c in chromosome I| Length = 309 Score = 98.6 bits (244), Expect = 1e-20 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 18/148 (12%) Frame = -3 Query: 637 KLYLSLVGAVNSQSEAMYGQLLAKYVDDPKNFFSVSSDFCHWGSRFSYTYY--------- 485 K+ ++GA+ S + + L++Y+ D N F +SSDFCHWG RF YT Y Sbjct: 152 KIVPIMIGALTSTTMMAAAKFLSQYIKDESNSFVISSDFCHWGRRFGYTLYLNDTNQLED 211 Query: 484 ----DKNHGA-----IHKSIEALDRMGMEIIETGDPDAFKQYLQEYENTICGRHPISVLL 332 K G I++SI LD +GM+IIET D F +YL+ +NTICGR+PI +++ Sbjct: 212 AVLKYKRRGGPTSPKIYESISNLDHIGMKIIETKSSDDFSEYLKTTQNTICGRYPIELIM 271 Query: 331 HMLKHCLTKIKVGFVRYEQSSQCKSMRD 248 ++ + F+ Y QSS + + D Sbjct: 272 KSMECANFSERFKFISYAQSSHVELVTD 299
>YJX8_YEAST (P47085) Hypothetical UPF0103 protein YJR008w| Length = 338 Score = 81.6 bits (200), Expect = 2e-15 Identities = 56/164 (34%), Positives = 77/164 (46%), Gaps = 34/164 (20%) Frame = -3 Query: 637 KLYLSLVGAVNSQSEAMYGQLLAKYVDDPKNFFSVSSDFCHWGSRFSYTYY--------- 485 K++ +V + + G +L++Y+ DP N F VSSDFCHWG RF YT Y Sbjct: 162 KVFPMMVSHNSVDVDRCIGNILSEYIKDPNNLFIVSSDFCHWGRRFQYTGYVGSKEELND 221 Query: 484 -----------------DKNHGAIHKSIEALDRMGMEIIE---TGDP-DAFKQYLQEYEN 368 + I +SIE +DR M+ + G+ DA+KQYL+ N Sbjct: 222 AIQEETEVEMLTARSKLSHHQVPIWQSIEIMDRYAMKTLSDTPNGERYDAWKQYLEITGN 281 Query: 367 TICGRHPISVLLHMLKHCL----TKIKVGFVRYEQSSQCKSMRD 248 TICG PISV+L L + IK + Y QSS S+ D Sbjct: 282 TICGEKPISVILSALSKIRDAGPSGIKFQWPNYSQSSHVTSIDD 325
>PERT_RAT (P14650) Thyroid peroxidase precursor (EC 1.11.1.8) (TPO)| Length = 914 Score = 31.2 bits (69), Expect = 2.8 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = -3 Query: 517 HWGSRFSYTYYDKNHGAIHKSIEALDRMGMEIIETGDPDAFKQYLQEYE 371 HW + +Y K GA+H+ I D + + PDAF+QY+ YE Sbjct: 415 HWSANTAYQEARKVVGALHQIITMRDYIPKIL----GPDAFRQYVGPYE 459
>PERT_MOUSE (P35419) Thyroid peroxidase precursor (EC 1.11.1.8) (TPO)| Length = 914 Score = 31.2 bits (69), Expect = 2.8 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = -3 Query: 517 HWGSRFSYTYYDKNHGAIHKSIEALDRMGMEIIETGDPDAFKQYLQEYE 371 HW + +Y K GA+H+ I D + + PDAF+QY+ YE Sbjct: 415 HWSANTAYQEARKVVGALHQIITMRDYIPKIL----GPDAFRQYVGPYE 459
>Y1771_AERPE (Q9YB24) UPF0103 protein APE1771| Length = 281 Score = 30.0 bits (66), Expect = 6.3 Identities = 14/48 (29%), Positives = 27/48 (56%) Frame = -3 Query: 484 DKNHGAIHKSIEALDRMGMEIIETGDPDAFKQYLQEYENTICGRHPIS 341 D NH ++ + D + ++ IE GDP+A + ++ + + CG PI+ Sbjct: 195 DLNHYEPYEENKRKDLLLLKAIEEGDPEAVFKTIEAHAISACGPSPIA 242
>ABHD5_HUMAN (Q8WTS1) Abhydrolase domain-containing protein 5| Length = 349 Score = 29.6 bits (65), Expect = 8.3 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Frame = -3 Query: 106 PVKLCNNNKLW-LKFSHCCSGGTRII 32 PV++ N NK+W LKFSH S T ++ Sbjct: 54 PVRISNGNKIWTLKFSHNISNKTPLV 79
>HDA6_CAEEL (Q20296) Histone deactylase 6| Length = 955 Score = 29.6 bits (65), Expect = 8.3 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = -3 Query: 397 FKQYLQEYENTICGRHP-ISVLLHMLKHCLTKIKV 296 F Q E+ENT+C HP S + +K LTK K+ Sbjct: 19 FNQTQNEHENTVCPTHPESSDRILKIKEALTKTKI 53 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,772,138 Number of Sequences: 219361 Number of extensions: 1980325 Number of successful extensions: 5065 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4921 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5057 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
