ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags32a14 |
|---|---|
| Clone Library Name | barley_pub |
>C560_MARPO (P35721) Succinate dehydrogenase cytochrome b560 subunit (Succinate| dehydrogenase, subunit III) Length = 137 Score = 47.8 bits (112), Expect = 2e-05 Identities = 23/44 (52%), Positives = 29/44 (65%) Frame = -2 Query: 319 NRPLSPHLPLKKPQLSATFSISHRIFGVALGAAIISIPLATRFG 188 NRPLSPHL + KPQL++TFSI HRI G L ++ L + G Sbjct: 4 NRPLSPHLTIYKPQLTSTFSIFHRISGAFLATMVLFSILFFKIG 47
>C560_PORPU (P80478) Succinate dehydrogenase cytochrome b560 subunit (Succinate| dehydrogenase, subunit III) Length = 125 Score = 43.5 bits (101), Expect = 4e-04 Identities = 22/39 (56%), Positives = 26/39 (66%) Frame = -2 Query: 319 NRPLSPHLPLKKPQLSATFSISHRIFGVALGAAIISIPL 203 NRP+SPHL + Q S+ FSI HRI GVA+ I S PL Sbjct: 5 NRPISPHLTIYNTQKSSLFSIWHRISGVAMFTLIASPPL 43
>C560_CHOCR (P48934) Succinate dehydrogenase cytochrome b560 subunit (Succinate| dehydrogenase, subunit III) Length = 127 Score = 42.7 bits (99), Expect = 7e-04 Identities = 19/32 (59%), Positives = 25/32 (78%) Frame = -2 Query: 325 VANRPLSPHLPLKKPQLSATFSISHRIFGVAL 230 ++NRP++PHL + PQLS+ FSI HRI GV L Sbjct: 7 ISNRPIAPHLLVYTPQLSSLFSIWHRISGVGL 38
>DHSC_RICPR (P41085) Succinate dehydrogenase cytochrome b556 subunit| (Cytochrome b-556) Length = 124 Score = 42.4 bits (98), Expect = 9e-04 Identities = 19/29 (65%), Positives = 23/29 (79%) Frame = -2 Query: 316 RPLSPHLPLKKPQLSATFSISHRIFGVAL 230 RP SPHL + KPQ+S+T SI HR+ GVAL Sbjct: 12 RPTSPHLTIYKPQISSTLSILHRMTGVAL 40
>DHSC_RICCN (Q92J99) Succinate dehydrogenase cytochrome b556 subunit| (Cytochrome b-556) Length = 124 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/33 (57%), Positives = 25/33 (75%) Frame = -2 Query: 316 RPLSPHLPLKKPQLSATFSISHRIFGVALGAAI 218 RP SPHL + KPQ+S+T SI +R+ GVAL A+ Sbjct: 12 RPTSPHLTIYKPQISSTLSILYRMTGVALFFAV 44
>C560_RECAM (P80481) Succinate dehydrogenase cytochrome b560 subunit (Succinate| dehydrogenase, subunit III) Length = 144 Score = 37.0 bits (84), Expect = 0.038 Identities = 17/34 (50%), Positives = 22/34 (64%) Frame = -2 Query: 319 NRPLSPHLPLKKPQLSATFSISHRIFGVALGAAI 218 NRP+SPHL + K Q++ T SI HRI G L + Sbjct: 20 NRPISPHLTIYKLQITNTLSIFHRITGGVLALTL 53
>C560_MOUSE (Q9CZB0) Succinate dehydrogenase cytochrome b560 subunit,| mitochondrial precursor (Integral membrane protein CII-3) (QPS1) (QPs-1) Length = 169 Score = 35.8 bits (81), Expect = 0.084 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = -2 Query: 322 ANRPLSPHLPLKKPQLSATFSISHRIFGVALGAAI 218 +NRPLSPHL + K L S+ HR G+AL + Sbjct: 48 SNRPLSPHLTIYKWSLPMALSVCHRGSGIALSGGV 82
>DHSC_PARDE (Q59659) Succinate dehydrogenase cytochrome b556 subunit| (Cytochrome b-556) Length = 130 Score = 35.4 bits (80), Expect = 0.11 Identities = 20/37 (54%), Positives = 24/37 (64%) Frame = -2 Query: 319 NRPLSPHLPLKKPQLSATFSISHRIFGVALGAAIISI 209 NRPLSPHL + + L+A SI RI G AL A I+ I Sbjct: 8 NRPLSPHLQVYRLPLAAITSIMTRITGHALVAGIVLI 44
>C560_HUMAN (Q99643) Succinate dehydrogenase cytochrome b560 subunit,| mitochondrial precursor (Integral membrane protein CII-3) (QPS1) (QPs-1) (Succinate dehydrogenase complex subunit C) (Succinate-ubiquinone oxidoreductase cytochrome B large subunit) (CY Length = 169 Score = 35.0 bits (79), Expect = 0.14 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = -2 Query: 322 ANRPLSPHLPLKKPQLSATFSISHRIFGVALGAAI 218 +NRPLSPH+ + L SI HR G+AL A + Sbjct: 48 SNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGV 82
>SDH3_YEAST (P33421) Succinate dehydrogenase cytochrome B subunit,| mitochondrial precursor Length = 198 Score = 33.9 bits (76), Expect = 0.32 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Frame = -2 Query: 475 SSFNNMDALRHSSRIGQAKSYTSSLLGALRQKMPPSGNR--SLHTSRPLSAPVANRPLSP 302 S+F+ AL S R+ + T+ L + + + N ++ + L+ A RP+SP Sbjct: 20 SAFSRAAALSSSRRLLFNTARTNFLSTSPLKNVASEMNTKAAIAEEQILNKQRAKRPISP 79 Query: 301 HLPLKKPQLSATFSISHRIFGVALG 227 HL + +PQL+ S HRI V +G Sbjct: 80 HLTIYQPQLTWYLSSLHRISLVLMG 104
>C560_BOVIN (P35720) Succinate dehydrogenase cytochrome b560 subunit,| mitochondrial precursor (Integral membrane protein CII-3) (QPS1) (QPs-1) (Succinate dehydrogenase complex subunit C) Length = 169 Score = 33.9 bits (76), Expect = 0.32 Identities = 16/34 (47%), Positives = 20/34 (58%) Frame = -2 Query: 319 NRPLSPHLPLKKPQLSATFSISHRIFGVALGAAI 218 NRPLSPH+ + L SI HR G+AL A + Sbjct: 49 NRPLSPHISIYGWSLPMAMSICHRGTGIALSAGV 82
>C560_CAEEL (P41956) Succinate dehydrogenase cytochrome b560 subunit,| mitochondrial precursor Length = 182 Score = 33.9 bits (76), Expect = 0.32 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = -2 Query: 319 NRPLSPHLPLKKPQLSATFSISHRIFGVALGAAII 215 NRP++PHL + +PQL+ S HRI G + ++ Sbjct: 51 NRPIAPHLTVYQPQLTWMLSGFHRISGCVMAGTLL 85
>YM07_YEAST (Q04487) Putative succinate dehydrogenase cytochrome B subunit,| mitochondrial precursor Length = 196 Score = 33.5 bits (75), Expect = 0.41 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%) Frame = -2 Query: 316 RPLSPHLPLKKPQLSATFSISHRIFGV--ALGAAIISIPL 203 RP+SPHL + +P++S S HRI GV ALG +I L Sbjct: 73 RPISPHLTVYEPEMSWYLSSLHRISGVLLALGFYAFTITL 112
>SDH3_SCHPO (O74882) Succinate dehydrogenase cytochrome B subunit,| mitochondrial precursor Length = 180 Score = 32.3 bits (72), Expect = 0.92 Identities = 18/69 (26%), Positives = 32/69 (46%) Frame = -2 Query: 409 SSLLGALRQKMPPSGNRSLHTSRPLSAPVANRPLSPHLPLKKPQLSATFSISHRIFGVAL 230 S+L R+ + + L++ +RP SPHL + +PQL+ S HRI G + Sbjct: 27 STLRNVWRRSIATEHLTQTEANSRLASQRVHRPNSPHLTIYEPQLTWYLSSLHRITGCVV 86 Query: 229 GAAIISIPL 203 + + + Sbjct: 87 AGTLYAFAM 95
>C560_CRIGR (P70097) Succinate dehydrogenase cytochrome b560 subunit,| mitochondrial precursor (Integral membrane protein CII-3) (QPS1) (QPs-1) Length = 169 Score = 32.0 bits (71), Expect = 1.2 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -2 Query: 322 ANRPLSPHLPLKKPQLSATFSISHRIFGVALGAAI 218 + RP+SPHL + + L SI HR GVAL + Sbjct: 48 SKRPVSPHLTIYRWSLPMVMSICHRGTGVALSGGV 82
>C560_CAEBR (P41955) Succinate dehydrogenase cytochrome b560 subunit,| mitochondrial precursor Length = 184 Score = 32.0 bits (71), Expect = 1.2 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -2 Query: 316 RPLSPHLPLKKPQLSATFSISHRIFGVALGAAII 215 RP++PHL + +PQL+ S HRI G + ++ Sbjct: 52 RPIAPHLTIYQPQLTWMLSGFHRISGCVMAGTLL 85
>NICA_DROME (Q9VC27) Nicastrin homolog precursor| Length = 695 Score = 31.6 bits (70), Expect = 1.6 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%) Frame = -2 Query: 523 LRDAPFALRGAVGTPNSSFNNMDALRHSSRIG---QAKSYTSSLLGALRQKMPPSGNRSL 353 L+ A L A P S N+ +R+ S +G ++ YT LLG L ++ P +R Sbjct: 526 LQSADCPLFKAASYPGSQLTNLPPMRYISVLGGSQESSGYTYRLLGYLLSQLQPDIHRDN 585 Query: 352 HTSRPL 335 T PL Sbjct: 586 CTDLPL 591
>LNT_CHLPN (Q9Z7Q1) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP| N-acyltransferase) Length = 541 Score = 31.6 bits (70), Expect = 1.6 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = +3 Query: 273 LSCGFFRGRWGDSGRFATGADRGRLVCRDRFPDGGIFCRRAPNR 404 +S G+ + G + G G L+CR FP + C+R P R Sbjct: 343 ISVGYDKRILVPGGEYIPGGKFGSLICRQLFPKYALGCKRLPGR 386
>TAF4B_HUMAN (Q92750) Transcription initiation factor TFIID 105 kDa subunit| (TAFII-105) (TAFII105) (Fragment) Length = 801 Score = 30.0 bits (66), Expect = 4.6 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Frame = -2 Query: 370 SGNRSLHTSRPLSAPVANRPLSPHLPLKKPQLS---ATFSISHRIFGVALGAAI 218 +G L TS+PL VAN + L +KP +S T S+ FG GAAI Sbjct: 360 AGTGLLQTSKPLVTSVANTVTTVSLQPEKPVVSGTAVTLSLPAVTFGETSGAAI 413
>JHD3C_HUMAN (Q9H3R0) JmjC domain-containing histone demethylation protein 3C| (EC 1.14.11.-) (Jumonji domain-containing protein 2C) (Gene amplified in squamous cell carcinoma 1 protein) (GASC-1 protein) Length = 1056 Score = 29.6 bits (65), Expect = 6.0 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -1 Query: 254 TPYIWRCAGCCHHIHSSCYQVRRH 183 T + CA CC +H+SCY + H Sbjct: 712 TSLLISCAKCCVRVHASCYGIPSH 735
>HISX_RHOBA (Q7UX39) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 460 Score = 29.6 bits (65), Expect = 6.0 Identities = 21/63 (33%), Positives = 28/63 (44%) Frame = -2 Query: 490 VGTPNSSFNNMDALRHSSRIGQAKSYTSSLLGALRQKMPPSGNRSLHTSRPLSAPVANRP 311 V P S +DA SS S + L ALR+K+ P G+ R L+ V + Sbjct: 5 VAVPEFSIQTVDARDPSS------SEAAETLAALREKLSPRGDLVSPRGRELTLKVFGKA 58 Query: 310 LSP 302 LSP Sbjct: 59 LSP 61
>JHD3B_MOUSE (Q91VY5) JmjC domain-containing histone demethylation protein 3B| (EC 1.14.11.-) (Jumonji domain-containing protein 2B) Length = 1086 Score = 29.6 bits (65), Expect = 6.0 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -1 Query: 236 CAGCCHHIHSSCYQVR 189 CA CC +H+SCY VR Sbjct: 748 CAHCCLQVHASCYGVR 763
>C560_CYACA (P48935) Succinate dehydrogenase cytochrome b560 subunit (Succinate| dehydrogenase, subunit III) Length = 132 Score = 29.3 bits (64), Expect = 7.8 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -2 Query: 319 NRPLSPHLPLKKPQLSATFSISHRIFGVAL 230 NRPLSP++ + Q ++ SI HR+ G+ L Sbjct: 5 NRPLSPYVTIYSSQWTSISSIFHRLSGLYL 34
>ATS9_HUMAN (Q9P2N4) ADAMTS-9 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 9) (ADAM-TS 9) (ADAM-TS9) Length = 1935 Score = 29.3 bits (64), Expect = 7.8 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 8/54 (14%) Frame = +3 Query: 294 GRWGDSGRFATGADRGRL-VCR----DRFPDGGIFCR---RAPNREDV*LFACP 431 G WG+ + G R RL VC+ +RFPD + C + P+RE ACP Sbjct: 1389 GNWGECTKLCGGGIRTRLVVCQRSNGERFPD--LSCEILDKPPDREQCNTHACP 1440
>ATP7B_HUMAN (P35670) Copper-transporting ATPase 2 (EC 3.6.3.4) (Copper pump 2)| (Wilson disease-associated protein) Length = 1465 Score = 29.3 bits (64), Expect = 7.8 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -2 Query: 352 HTSRPLSAPVANRPLSPHLPLKKPQLSATFSI 257 H+ RPLSAP ++ + LP +K + TFS+ Sbjct: 1115 HSERPLSAPASHLNEAGSLPAEKDAVPQTFSV 1146
>INS_HYDCO (P68992) Insulin [Contains: Insulin B chain; Insulin A chain]| Length = 59 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = +1 Query: 400 TEKMCSSLLAQCVRSV*GHPCC*KTSWGYQPHHGEQMEHLSGVQSGCCCDTC 555 T+++C S L + V C + + Y P ++E L G+ CC +TC Sbjct: 3 TQRLCGSHLVDALYFV-----CGERGFFYSPKPIRELEPLLGIVEQCCHNTC 49
>INS_CHIMO (P68991) Insulin [Contains: Insulin B chain; Insulin A chain]| Length = 59 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = +1 Query: 400 TEKMCSSLLAQCVRSV*GHPCC*KTSWGYQPHHGEQMEHLSGVQSGCCCDTC 555 T+++C S L + V C + + Y P ++E L G+ CC +TC Sbjct: 3 TQRLCGSHLVDALYFV-----CGERGFFYSPKPIRELEPLLGIVEQCCHNTC 49
>PANG_DROME (P91943) Protein pangolin| Length = 751 Score = 29.3 bits (64), Expect = 7.8 Identities = 17/54 (31%), Positives = 23/54 (42%) Frame = -2 Query: 442 SSRIGQAKSYTSSLLGALRQKMPPSGNRSLHTSRPLSAPVANRPLSPHLPLKKP 281 SS + T LG+ +++ GNR H LS PV + S P KP Sbjct: 539 SSTVSPVTCMTGPCLGSSQERAMMLGNRFSHLGMGLSPPVVSTSTSKSEPFFKP 592 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,890,999 Number of Sequences: 219361 Number of extensions: 1930450 Number of successful extensions: 5624 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 5359 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5619 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
