ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags31l14 |
|---|---|
| Clone Library Name | barley_pub |
>SUGT1_HUMAN (Q9Y2Z0) Suppressor of G2 allele of SKP1 homolog (Sgt1) (Putative| 40-6-3 protein) Length = 364 Score = 118 bits (296), Expect = 9e-27 Identities = 55/89 (61%), Positives = 73/89 (82%), Gaps = 1/89 (1%) Frame = -3 Query: 536 YPSSKS-KKDWDKLEAEVKKQEKDEKLDGDAALNKFFREIYSDADEDMRRAMMKSFVESN 360 YPSS ++WDKL E+K++EK+EKL+GDAALN+ F++IYSD ++++RAM KSF+ES Sbjct: 276 YPSSSPYTRNWDKLVGEIKEEEKNEKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESG 335 Query: 359 GTVLSTNWKDVGKKTVEGSPPDGMELKKW 273 GTVLSTNW DVGK+ VE +PPD ME KK+ Sbjct: 336 GTVLSTNWSDVGKRKVEINPPDDMEWKKY 364
>SUGT1_MOUSE (Q9CX34) Suppressor of G2 allele of SKP1 homolog| Length = 335 Score = 118 bits (295), Expect = 1e-26 Identities = 55/89 (61%), Positives = 73/89 (82%), Gaps = 1/89 (1%) Frame = -3 Query: 536 YPSSKS-KKDWDKLEAEVKKQEKDEKLDGDAALNKFFREIYSDADEDMRRAMMKSFVESN 360 YPSS ++WDKL E+K++EK+EKL+GDAALNK F++IYSD ++++RAM KSF+ES Sbjct: 247 YPSSSHYTRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMESG 306 Query: 359 GTVLSTNWKDVGKKTVEGSPPDGMELKKW 273 GTVLSTNW DVGK+ VE +PPD ME K++ Sbjct: 307 GTVLSTNWSDVGKRKVEINPPDDMEWKQY 335
>SGT1_YEAST (Q08446) Protein SGT1 (Suppressor of G2 allele of SKP1)| Length = 395 Score = 97.1 bits (240), Expect = 3e-20 Identities = 49/90 (54%), Positives = 65/90 (72%), Gaps = 1/90 (1%) Frame = -3 Query: 539 SYPSSKSKK-DWDKLEAEVKKQEKDEKLDGDAALNKFFREIYSDADEDMRRAMMKSFVES 363 SYPSS KK DW KL+ + +E DE+ + + FF+++Y+ AD D +RAMMKSF+ES Sbjct: 312 SYPSSSKKKIDWSKLDID---EEADEEA---GSADSFFQKLYAGADPDTKRAMMKSFIES 365 Query: 362 NGTVLSTNWKDVGKKTVEGSPPDGMELKKW 273 NGT LST+W+DV K TV+ SPP+GME K W Sbjct: 366 NGTALSTDWEDVSKGTVKTSPPEGMEPKHW 395
>GIT7_SCHPO (O59709) Glucose insensitive transcription protein 7| Length = 379 Score = 94.4 bits (233), Expect = 2e-19 Identities = 50/87 (57%), Positives = 63/87 (72%), Gaps = 1/87 (1%) Frame = -3 Query: 530 SSKSK-KDWDKLEAEVKKQEKDEKLDGDAALNKFFREIYSDADEDMRRAMMKSFVESNGT 354 ++K+K KDWD L A++ E+DE G+AAL F+ +Y +AD+D RRAMMKS+ ESNGT Sbjct: 295 NTKNKAKDWDSL-AKLADLEEDEPT-GEAALANLFQNLYKNADDDTRRAMMKSYTESNGT 352 Query: 353 VLSTNWKDVGKKTVEGSPPDGMELKKW 273 LSTNWKDV KT E PP GME KK+ Sbjct: 353 ALSTNWKDVKSKTFETKPPQGMEPKKF 379
>CYBP_HUMAN (Q9HB71) Calcyclin-binding protein (CacyBP) (hCacyBP)| (Siah-interacting protein) (S100A6-binding protein) Length = 228 Score = 39.3 bits (90), Expect = 0.007 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 6/55 (10%) Frame = -3 Query: 509 WDKL---EAEVKKQEK---DEKLDGDAALNKFFREIYSDADEDMRRAMMKSFVES 363 WD L E E K++EK D + D L ++IY D D+DM+R + K++VES Sbjct: 163 WDYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVES 217
>CYBP_MOUSE (Q9CXW3) Calcyclin-binding protein (CacyBP) (Siah-interacting| protein) Length = 229 Score = 39.3 bits (90), Expect = 0.007 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 6/55 (10%) Frame = -3 Query: 509 WDKL---EAEVKKQEK---DEKLDGDAALNKFFREIYSDADEDMRRAMMKSFVES 363 WD L E E K++EK D + D L ++IY D D+DM+R + K++VES Sbjct: 164 WDYLTQVEKECKEKEKPSYDTEADPSEGLMNVLKKIYEDGDDDMKRTINKAWVES 218
>CYBP_PONPY (Q5R6Z8) Calcyclin-binding protein (CacyBP)| Length = 228 Score = 38.5 bits (88), Expect = 0.012 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 6/55 (10%) Frame = -3 Query: 509 WDKL---EAEVKKQEK---DEKLDGDAALNKFFREIYSDADEDMRRAMMKSFVES 363 WD L E E K++EK D + D L ++IY D D+DM+R + K++VES Sbjct: 163 WDYLTQVEKERKEKEKPSYDAETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVES 217
>T2C2_PBCV1 (P31117) Type II restriction enzyme CviAII (EC 3.1.21.4)| (Endonuclease CviAII) (R.CviAII) Length = 342 Score = 30.8 bits (68), Expect = 2.5 Identities = 21/67 (31%), Positives = 34/67 (50%) Frame = -3 Query: 521 SKKDWDKLEAEVKKQEKDEKLDGDAALNKFFREIYSDADEDMRRAMMKSFVESNGTVLST 342 SK +DK+ +E KK EK+ + + F +IY + + + S + NG VL T Sbjct: 68 SKGIFDKIRSENKKYEKNHQKLTKKMVLDIFSKIYKEDSRKSKTQCVVSEKKDNGGVLLT 127 Query: 341 NWKDVGK 321 +D+GK Sbjct: 128 --EDLGK 132
>TDX_TRYBR (Q26695) Thioredoxin peroxidase (EC 1.11.1.15) (Peroxiredoxin)| (Thioredoxin-dependent peroxide reductase) (Thiol-specific antioxidant protein) Length = 199 Score = 30.8 bits (68), Expect = 2.5 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -3 Query: 413 DADEDMRRAMMKSFVESNGTVLSTNWKDVGKKTVEGSP 300 + DE +R FVE +G V NWK G KT++ P Sbjct: 152 NVDETLRLVKAFQFVEKHGEVCPANWKP-GSKTMKADP 188
>HS90A_CHICK (P11501) Heat shock protein HSP 90-alpha| Length = 728 Score = 30.4 bits (67), Expect = 3.3 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = -3 Query: 524 KSKKDWDKLEAE-VKKQEKDEKLDGDAALNKFFREIYSDADE 402 K +K DK E E V E++EK DGD K +E Y D +E Sbjct: 244 KEEKTEDKPEIEDVGSDEEEEKKDGDKKKKKKIKEKYIDEEE 285
>KTNA1_ARATH (Q9SEX2) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)| (Katanin p60 subunit) (p60 katanin) (Atp60) (CAD ATPase) (Katanin 1) (BOTERO1 protein) (ECTOPIC ROOT HAIR 3 protein) (FAT ROOT protein) (FRAGILE FIBER 2 protein) (AtAAA1) Length = 523 Score = 30.4 bits (67), Expect = 3.3 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = -3 Query: 482 KQEKDEKLDGDAALNKFFREIYSDADEDMRRAMMKSFVESNGTVLSTNWKDV 327 K K E ++GDA K R +Y DED+ + + ++S V W DV Sbjct: 193 KSNKAESMNGDAEDGKSKRGLYEGPDEDLAAMLERDVLDSTPGV---RWDDV 241
>CEND1_MOUSE (Q8BZ05) Centaurin-delta 1 (Cnt-d1)| Length = 1703 Score = 30.0 bits (66), Expect = 4.3 Identities = 9/25 (36%), Positives = 13/25 (52%) Frame = -2 Query: 99 ATVGNGVSPYLCICGMEVQNVRCNW 25 +T+ N +SPY C G +C W Sbjct: 462 STISNAISPYACFYGSSAAKEKCGW 486
>ERB1_YEAST (Q04660) Eukaryotic ribosome biogenesis protein 1| Length = 807 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 8/52 (15%) Frame = -3 Query: 530 SSKSKKDWDKLEAEVKKQEK--------DEKLDGDAALNKFFREIYSDADED 399 +S+S +D D+ E+ V+++E D D DA LNK E D +ED Sbjct: 43 ASESDEDDDEYESAVEEKESSSDKEAQDDSDDDSDAELNKLLAEEEGDGEED 94
>PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacemaker protein| Rigui) (mPER) (M-Rigui) Length = 1291 Score = 29.6 bits (65), Expect = 5.6 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 8/44 (18%) Frame = +2 Query: 407 QHHCKFHGKTCSMQHHR--------QVSHPSPVFSLQPQAYPSP 514 +HHC+ K HH+ VSHPSPV S P +P P Sbjct: 829 RHHCRSKAKRSRHHHHQTPRPETPCYVSHPSPVPSSGP--WPPP 870
>YOS1_SCHPO (P87319) Hypothetical protein C21C3.01c in chromosome II| Length = 3011 Score = 29.6 bits (65), Expect = 5.6 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = -3 Query: 536 YPSSKSKKDWDKLEAEVKKQEKDEKLDGDAALNKFFREIYSDADEDMRRAMMKSFVE 366 +P +K+ D+LE + ++ K E+LD L K FRE ++ + + +SF+E Sbjct: 90 HPQAKNSLTRDELE-QSQQALKQEQLDSFEILRKNFRETLEESSSNPNISRKQSFIE 145
>HS90A_HUMAN (P07900) Heat shock protein HSP 90-alpha (HSP 86) (NY-REN-38| antigen) Length = 731 Score = 29.3 bits (64), Expect = 7.4 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = -3 Query: 524 KSKKDWDKLEAE-VKKQEKDEKLDGDAALNKFFREIYSDADE 402 + K+ DK E E V E++EK DGD K +E Y D +E Sbjct: 247 EEKESEDKPEIEDVGSDEEEEKKDGDKKKKKKIKEKYIDQEE 288
>HEXA_ENTHI (P49009) Beta-hexosaminidase alpha chain precursor (EC 3.2.1.52)| (N-acetyl-beta-glucosaminidase) (Beta-GlcNAcase) (Beta-N-acetylhexosaminidase) Length = 564 Score = 29.3 bits (64), Expect = 7.4 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = +1 Query: 10 VDSLAPVTTDVLHFHTTDAQVWAY 81 +D+LA V +VLH H +DAQ + + Sbjct: 206 IDTLASVKANVLHIHLSDAQTFVF 229
>SIRT2_MOUSE (Q8VDQ8) NAD-dependent deacetylase sirtuin-2 (EC 3.5.1.-)| (SIR2-like protein 2) (mSIR2L2) Length = 389 Score = 29.3 bits (64), Expect = 7.4 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = +2 Query: 380 SSLLYAYLHQHHCKFHGKTCSMQHHRQVSHPSPVFSLQPQAYPSPF 517 S+ LYA L ++H + + + ++ HP P F+L + YP F Sbjct: 100 STGLYANLEKYHLPYPEAIFEISYFKK--HPEPFFALAKELYPGQF 143
>CTL3_MOUSE (Q921V7) Choline transporter-like protein 3 (Solute carrier family| 44 member 3) Length = 652 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/58 (27%), Positives = 33/58 (56%) Frame = -2 Query: 225 VLTWLQTCKSMLVGLCVSSFCFRICKLFAWQVSF*VLILVLRATVGNGVSPYLCICGM 52 +L+ + + ++GLCV +F + LFA++ +LI ++ + V G+ L +CG+ Sbjct: 203 ILSGIMAGRDTILGLCVFTFALSLAMLFAFRFISTLLIHIIISLVILGL---LFVCGV 257
>HS90A_PIG (O02705) Heat shock protein HSP 90-alpha (HSP 86)| Length = 732 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -3 Query: 524 KSKKDWDKLEAEVKKQEKDEKLDGDAALNKFFREIYSDADE 402 K +D ++E +E++EK DGD K +E Y D +E Sbjct: 249 KESEDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEE 289
>DBP5_CANAL (Q5AJD0) ATP-dependent RNA helicase DBP5 (EC 3.6.1.-)| Length = 540 Score = 28.9 bits (63), Expect = 9.6 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = -3 Query: 533 PSSKSKKDWDKLEAEVKKQEKDEKLDGDAALNKFFREIYSDADED 399 P +K D DK + + K + KDE DGD A + E+ ++ E+ Sbjct: 67 PENKEIND-DKKDEDKKDESKDEVKDGDGAKEETKEEVKEESKEE 110 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,547,478 Number of Sequences: 219361 Number of extensions: 1638187 Number of successful extensions: 4892 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4701 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4887 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
