ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32a06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY109790.1| Zea mays CL76_1 mRNA sequence 68 4e-08
2ref|XM_467323.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
3ref|XM_467322.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
5dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
6dbj|AP003994.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
7dbj|AK111985.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
8dbj|AK100966.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
9dbj|AK100056.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
10gb|AC108434.12| Mus musculus chromosome 18, clone RP23-198I24, c... 44 0.57
11gb|AC137117.15| Mus musculus chromosome 15, clone RP23-242E20, c... 42 2.2
12gb|AC165256.2| Mus musculus BAC clone RP23-216O10 from chromosom... 42 2.2
13gb|AC128698.4| Mus musculus BAC clone RP24-127J4 from chromosome... 42 2.2
14gb|AC124531.5| Mus musculus BAC clone RP23-299D2 from 7, complet... 42 2.2
15gb|AC117215.3| Mus musculus BAC clone RP23-308M1 from 7, complet... 42 2.2
16gb|AE017160.1| Chlamydophila pneumoniae TW-183, section 4 of 4 o... 42 2.2
17ref|XM_967585.1| PREDICTED: Tribolium castaneum similar to CG935... 42 2.2
18gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome 42 2.2
19gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome 42 2.2
20dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, compl... 42 2.2
21gb|AC123068.4| Mus musculus BAC clone RP23-21P10 from 1, complet... 40 8.8
22ref|XM_673664.1| Plasmodium berghei strain ANKA hypothetical pro... 40 8.8
23gb|AC160124.3| Mus musculus BAC clone RP23-297P22 from chromosom... 40 8.8
24emb|BX640407.9| Zebrafish DNA sequence from clone DKEY-208B10 in... 40 8.8
25gb|AC148817.3| Medicago truncatula chromosome 7 BAC clone mth2-2... 40 8.8
26gb|AC154448.2| Mus musculus BAC clone RP23-185F24 from chromosom... 40 8.8
27gb|AC119189.8| Mus musculus chromosome 1, clone RP24-178E16, com... 40 8.8
28gb|AC154421.2| Mus musculus BAC clone RP24-217C15 from 16, compl... 40 8.8
29gb|AC154543.2| Mus musculus BAC clone RP23-228E21 from 12, compl... 40 8.8
30emb|CT010578.16| Mouse DNA sequence from clone RP23-268O1 on chr... 40 8.8
31emb|CT030709.6| Mouse DNA sequence from clone RP23-268C22 on chr... 40 8.8
32emb|AJ239059.1|TBR239059 Trypanosoma brucei mRNA for ESAG11 protein 40 8.8 
>gb|AY109790.1| Zea mays CL76_1 mRNA sequence
          Length = 1807

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                       
Query: 407 tttagctcaccaactttcttgtcaatctctttgccggagggatttcatcggatttcccaa 466
           ||||||| ||||| ||||| ||||  ||||||||||||||||| || || || ||||| |
Sbjct: 513 tttagctgaccaattttctcgtcagcctctttgccggagggatatcgtcagacttcccca 572

                         
Query: 467 ggaagtctgacttg 480
           ||||||||||||||
Sbjct: 573 ggaagtctgacttg 586



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Plus

                                            
Query: 596 cgaccagtttcaggtaagcctgcgtgaatgcct 628
           |||||||||||||| ||| ||||||||||||||
Sbjct: 701 cgaccagtttcaggcaag-ctgcgtgaatgcct 732
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>ref|XM_467323.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1803

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 84/102 (82%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                        
Query: 530  gttcgagaggtcacagacatatgagcaagcctttcggtgatactcgaaaccttatgaacc 589
            ||||||||||| |||||||||||||  |  || ||||| |   | |||||||| || |  
Sbjct: 1283 gttcgagaggtaacagacatatgagttaatctctcggtaagggttgaaaccttgtgcatt 1224

                                                      
Query: 590  gttgcccgaccagtttcaggtaagcctgcgtgaatgccttaa 631
            |||||||| ||||||||||||||  |||||||||||||||||
Sbjct: 1223 gttgcccggccagtttcaggtaa-actgcgtgaatgccttaa 1183
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>ref|XM_467322.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2722

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 84/102 (82%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                        
Query: 530  gttcgagaggtcacagacatatgagcaagcctttcggtgatactcgaaaccttatgaacc 589
            ||||||||||| |||||||||||||  |  || ||||| |   | |||||||| || |  
Sbjct: 2167 gttcgagaggtaacagacatatgagttaatctctcggtaagggttgaaaccttgtgcatt 2108

                                                      
Query: 590  gttgcccgaccagtttcaggtaagcctgcgtgaatgccttaa 631
            |||||||| ||||||||||||||  |||||||||||||||||
Sbjct: 2107 gttgcccggccagtttcaggtaa-actgcgtgaatgccttaa 2067
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 84/102 (82%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                            
Query: 530      gttcgagaggtcacagacatatgagcaagcctttcggtgatactcgaaaccttatgaacc 589
                ||||||||||| |||||||||||||  |  || ||||| |   | |||||||| || |  
Sbjct: 28844544 gttcgagaggtaacagacatatgagttaatctctcggtaagggttgaaaccttgtgcatt 28844485

                                                          
Query: 590      gttgcccgaccagtttcaggtaagcctgcgtgaatgccttaa 631
                |||||||| ||||||||||||||  |||||||||||||||||
Sbjct: 28844484 gttgcccggccagtttcaggtaa-actgcgtgaatgccttaa 28844444
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>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0459B01
          Length = 163087

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 84/102 (82%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                          
Query: 530    gttcgagaggtcacagacatatgagcaagcctttcggtgatactcgaaaccttatgaacc 589
              ||||||||||| |||||||||||||  |  || ||||| |   | |||||||| || |  
Sbjct: 161117 gttcgagaggtaacagacatatgagttaatctctcggtaagggttgaaaccttgtgcatt 161058

                                                        
Query: 590    gttgcccgaccagtttcaggtaagcctgcgtgaatgccttaa 631
              |||||||| ||||||||||||||  |||||||||||||||||
Sbjct: 161057 gttgcccggccagtttcaggtaa-actgcgtgaatgccttaa 161017
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>dbj|AP003994.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1111_E07
          Length = 123613

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 84/102 (82%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                         
Query: 530   gttcgagaggtcacagacatatgagcaagcctttcggtgatactcgaaaccttatgaacc 589
             ||||||||||| |||||||||||||  |  || ||||| |   | |||||||| || |  
Sbjct: 37236 gttcgagaggtaacagacatatgagttaatctctcggtaagggttgaaaccttgtgcatt 37177

                                                       
Query: 590   gttgcccgaccagtttcaggtaagcctgcgtgaatgccttaa 631
             |||||||| ||||||||||||||  |||||||||||||||||
Sbjct: 37176 gttgcccggccagtttcaggtaa-actgcgtgaatgccttaa 37136
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>dbj|AK111985.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B03, full
            insert sequence
          Length = 1407

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 84/102 (82%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                        
Query: 530  gttcgagaggtcacagacatatgagcaagcctttcggtgatactcgaaaccttatgaacc 589
            ||||||||||| |||||||||||||  |  || ||||| |   | |||||||| || |  
Sbjct: 1041 gttcgagaggtaacagacatatgagttaatctctcggtaagggttgaaaccttgtgcatt 982

                                                      
Query: 590  gttgcccgaccagtttcaggtaagcctgcgtgaatgccttaa 631
            |||||||| ||||||||||||||  |||||||||||||||||
Sbjct: 981  gttgcccggccagtttcaggtaa-actgcgtgaatgccttaa 941
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>dbj|AK100966.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142H24, full
            insert sequence
          Length = 1803

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 84/102 (82%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                        
Query: 530  gttcgagaggtcacagacatatgagcaagcctttcggtgatactcgaaaccttatgaacc 589
            ||||||||||| |||||||||||||  |  || ||||| |   | |||||||| || |  
Sbjct: 1283 gttcgagaggtaacagacatatgagttaatctctcggtaagggttgaaaccttgtgcatt 1224

                                                      
Query: 590  gttgcccgaccagtttcaggtaagcctgcgtgaatgccttaa 631
            |||||||| ||||||||||||||  |||||||||||||||||
Sbjct: 1223 gttgcccggccagtttcaggtaa-actgcgtgaatgccttaa 1183
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>dbj|AK100056.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158B11, full
            insert sequence
          Length = 2722

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 84/102 (82%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                        
Query: 530  gttcgagaggtcacagacatatgagcaagcctttcggtgatactcgaaaccttatgaacc 589
            ||||||||||| |||||||||||||  |  || ||||| |   | |||||||| || |  
Sbjct: 2167 gttcgagaggtaacagacatatgagttaatctctcggtaagggttgaaaccttgtgcatt 2108

                                                      
Query: 590  gttgcccgaccagtttcaggtaagcctgcgtgaatgccttaa 631
            |||||||| ||||||||||||||  |||||||||||||||||
Sbjct: 2107 gttgcccggccagtttcaggtaa-actgcgtgaatgccttaa 2067
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>gb|AC108434.12| Mus musculus chromosome 18, clone RP23-198I24, complete sequence
          Length = 197080

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 368   catgcctctctgcagccgatcg 389
             ||||||||||||||||||||||
Sbjct: 28089 catgcctctctgcagccgatcg 28110
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>gb|AC137117.15| Mus musculus chromosome 15, clone RP23-242E20, complete sequence
          Length = 202147

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 153   cacatgttttgttcatagaca 173
             |||||||||||||||||||||
Sbjct: 43896 cacatgttttgttcatagaca 43876
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>gb|AC165256.2| Mus musculus BAC clone RP23-216O10 from chromosome 9, complete sequence
          Length = 231728

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   catgcctctctgcagccgatc 388
             |||||||||||||||||||||
Sbjct: 11746 catgcctctctgcagccgatc 11726
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>gb|AC128698.4| Mus musculus BAC clone RP24-127J4 from chromosome 9, complete sequence
          Length = 148461

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 368    catgcctctctgcagccgatc 388
              |||||||||||||||||||||
Sbjct: 114917 catgcctctctgcagccgatc 114897
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>gb|AC124531.5| Mus musculus BAC clone RP23-299D2 from 7, complete sequence
          Length = 191228

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 465    aaggaagtctgacttgagatg 485
              |||||||||||||||||||||
Sbjct: 171528 aaggaagtctgacttgagatg 171548
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>gb|AC117215.3| Mus musculus BAC clone RP23-308M1 from 7, complete sequence
          Length = 192092

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 465  aaggaagtctgacttgagatg 485
            |||||||||||||||||||||
Sbjct: 1528 aaggaagtctgacttgagatg 1548
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>gb|AE017160.1| Chlamydophila pneumoniae TW-183, section 4 of 4 of the complete genome
          Length = 324746

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 458    atttcccaaggaagtctgact 478
              |||||||||||||||||||||
Sbjct: 118205 atttcccaaggaagtctgact 118185
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>ref|XM_967585.1| PREDICTED: Tribolium castaneum similar to CG9357-PA (LOC661428), mRNA
          Length = 1531

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 442  ggagggatttcatcggatttc 462
            |||||||||||||||||||||
Sbjct: 1178 ggagggatttcatcggatttc 1158
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>gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome
          Length = 1229853

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 458     atttcccaaggaagtctgact 478
               |||||||||||||||||||||
Sbjct: 1049371 atttcccaaggaagtctgact 1049391
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>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome
          Length = 1230230

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 458     atttcccaaggaagtctgact 478
               |||||||||||||||||||||
Sbjct: 1022071 atttcccaaggaagtctgact 1022051
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>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence
          Length = 1226565

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 458     atttcccaaggaagtctgact 478
               |||||||||||||||||||||
Sbjct: 1021392 atttcccaaggaagtctgact 1021372
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>gb|AC123068.4| Mus musculus BAC clone RP23-21P10 from 1, complete sequence
          Length = 221464

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 275    agcaagcagggggaggaaac 294
              ||||||||||||||||||||
Sbjct: 191843 agcaagcagggggaggaaac 191862
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>ref|XM_673664.1| Plasmodium berghei strain ANKA hypothetical protein (PB000644.01.0)
            partial mRNA
          Length = 7827

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 67   tgttagattgcacatgaaca 86
            ||||||||||||||||||||
Sbjct: 6250 tgttagattgcacatgaaca 6231
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>gb|AC160124.3| Mus musculus BAC clone RP23-297P22 from chromosome 9, complete sequence
          Length = 182831

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   aaagcaagcagggggaggaa 292
             ||||||||||||||||||||
Sbjct: 74354 aaagcaagcagggggaggaa 74373
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>emb|BX640407.9| Zebrafish DNA sequence from clone DKEY-208B10 in linkage group 12,
             complete sequence
          Length = 89034

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 624   tgccttaacatcgggttttg 643
             ||||||||||||||||||||
Sbjct: 41888 tgccttaacatcgggttttg 41907
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>gb|AC148817.3| Medicago truncatula chromosome 7 BAC clone mth2-22c10, complete
             sequence
          Length = 123020

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   gaaacaaccagaaggaccat 309
             ||||||||||||||||||||
Sbjct: 23563 gaaacaaccagaaggaccat 23582
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>gb|AC154448.2| Mus musculus BAC clone RP23-185F24 from chromosome 16, complete sequence
          Length = 203269

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    ctttcttgtcaatctctttg 439
              ||||||||||||||||||||
Sbjct: 100956 ctttcttgtcaatctctttg 100937
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>gb|AC119189.8| Mus musculus chromosome 1, clone RP24-178E16, complete sequence
          Length = 182530

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 275    agcaagcagggggaggaaac 294
              ||||||||||||||||||||
Sbjct: 157717 agcaagcagggggaggaaac 157698
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>gb|AC154421.2| Mus musculus BAC clone RP24-217C15 from 16, complete sequence
          Length = 188761

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    ctttcttgtcaatctctttg 439
              ||||||||||||||||||||
Sbjct: 161969 ctttcttgtcaatctctttg 161950
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>gb|AC154543.2| Mus musculus BAC clone RP23-228E21 from 12, complete sequence
          Length = 197876

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 536   gaggtcacagacatatgagc 555
             ||||||||||||||||||||
Sbjct: 80465 gaggtcacagacatatgagc 80484
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>emb|CT010578.16| Mouse DNA sequence from clone RP23-268O1 on chromosome 12, complete
             sequence
          Length = 180650

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 536   gaggtcacagacatatgagc 555
             ||||||||||||||||||||
Sbjct: 86656 gaggtcacagacatatgagc 86675
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>emb|CT030709.6| Mouse DNA sequence from clone RP23-268C22 on chromosome 9, complete
             sequence
          Length = 206089

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   aaagcaagcagggggaggaa 292
             ||||||||||||||||||||
Sbjct: 45865 aaagcaagcagggggaggaa 45846
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>emb|AJ239059.1|TBR239059 Trypanosoma brucei mRNA for ESAG11 protein
          Length = 1166

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 130 aaactcaggacaaacaaaga 149
           ||||||||||||||||||||
Sbjct: 193 aaactcaggacaaacaaaga 212


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,875,155
Number of Sequences: 3902068
Number of extensions: 4875155
Number of successful extensions: 81539
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81424
Number of HSP's gapped (non-prelim): 106
length of query: 648
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 625
effective length of database: 17,143,297,704
effective search space: 10714561065000
effective search space used: 10714561065000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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