| Clone Name | rbaal2b06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ606019.1| Triticum aestivum partial mRNA for putative cyclin (ibZm gene) Length = 452 Score = 113 bits (57), Expect = 6e-22 Identities = 114/133 (85%) Strand = Plus / Minus Query: 312 cccgcgctgctggaggaacaactacgctgttcttgcatggattggtttgggccttcttca 371 |||||||||||||||||||| |||||| |||||| |||||| || |||||||||| || Sbjct: 244 cccgcgctgctggaggaacagctacgccgttcttagatggatcggcctgggccttctgca 185 Query: 372 agagctgagcgcccaacctcctggtgagtggtcgattggtccctgccggtagctggatct 431 |||||||||| || || |||||||||| ||| ||||| |||| ||||| |||||||||| Sbjct: 184 agagctgagcaccgaagctcctggtgattgggcgatttatccccgccggcagctggatct 125 Query: 432 tgctgtcgtggac 444 ||| |||| |||| Sbjct: 124 tgccgtcgaggac 112 Score = 40.1 bits (20), Expect = 7.8 Identities = 51/60 (85%), Gaps = 1/60 (1%) Strand = Plus / Minus Query: 438 cgtggacaacgttgccaatgtccc-gatcacgtgcatgtttcctcccgcaccagggcggc 496 ||||||| |||||||| ||||||| || ||| || |||| ||||||||||| ||||||| Sbjct: 106 cgtggacgacgttgccgatgtccccgagcacccgcctgttccctcccgcaccggggcggc 47
>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088I06, complete sequence Length = 187651 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 374 agctgagcgcccaacctcctggtgagtggtcgattggtccctgccggtagctggatcttg 433 ||||| ||||| || |||||||||| ||| |||||| |||| |||| |||||||||||| Sbjct: 164951 agctgggcgccgaagctcctggtgattgggcgattgatcccctccggcagctggatcttg 164892 Query: 434 ctgt 437 |||| Sbjct: 164891 ctgt 164888
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 374 agctgagcgcccaacctcctggtgagtggtcgattggtccctgccggtagctggatcttg 433 ||||| ||||| || |||||||||| ||| |||||| |||| |||| |||||||||||| Sbjct: 24096462 agctgggcgccgaagctcctggtgattgggcgattgatcccctccggcagctggatcttg 24096403 Query: 434 ctgt 437 |||| Sbjct: 24096402 ctgt 24096399 Score = 48.1 bits (24), Expect = 0.032 Identities = 54/64 (84%) Strand = Plus / Plus Query: 374 agctgagcgcccaacctcctggtgagtggtcgattggtccctgccggtagctggatcttg 433 ||||| ||||| || |||||||||| || |||||| |||| |||| |||||||||||| Sbjct: 24530427 agctgggcgccgaagctcctggtgatggggcgattgatcccctccggcagctggatcttg 24530486 Query: 434 ctgt 437 |||| Sbjct: 24530487 ctgt 24530490
>dbj|AK107486.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-C09, full insert sequence Length = 3074 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 374 agctgagcgcccaacctcctggtgagtggtcgattggtccctgccggtagctggatcttg 433 ||||| ||||| || |||||||||| ||| |||||| |||| |||| |||||||||||| Sbjct: 1823 agctgggcgccgaagctcctggtgattgggcgattgatcccctccggcagctggatcttg 1882 Query: 434 ctgt 437 |||| Sbjct: 1883 ctgt 1886
>ref|XM_475474.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1566 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 374 agctgagcgcccaacctcctggtgagtggtcgattggtccctgccggtagctggatcttg 433 ||||| ||||| || |||||||||| ||| |||||| |||| |||| |||||||||||| Sbjct: 416 agctgggcgccgaagctcctggtgattgggcgattgatcccctccggcagctggatcttg 357 Query: 434 ctgtcg 439 | |||| Sbjct: 356 ccgtcg 351
>gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017K09, complete sequence Length = 155525 Score = 48.1 bits (24), Expect = 0.032 Identities = 54/64 (84%) Strand = Plus / Plus Query: 374 agctgagcgcccaacctcctggtgagtggtcgattggtccctgccggtagctggatcttg 433 ||||| ||||| || |||||||||| || |||||| |||| |||| |||||||||||| Sbjct: 44609 agctgggcgccgaagctcctggtgatggggcgattgatcccctccggcagctggatcttg 44668 Query: 434 ctgt 437 |||| Sbjct: 44669 ctgt 44672
>gb|AC012499.8| Homo sapiens BAC clone RP11-428I14 from 2, complete sequence Length = 183436 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 62 gttgtactttgtcactcttgagt 84 ||||||||||||||||||||||| Sbjct: 82127 gttgtactttgtcactcttgagt 82105
>gb|AC113328.5| Mus musculus chromosome 3, clone RP23-456E2, complete sequence Length = 168421 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 282 attgcttcttgtttactggcttgag 306 |||||||||||||||| |||||||| Sbjct: 27692 attgcttcttgtttacaggcttgag 27668
>gb|AC068066.3| Mus musculus strain C57BL6/J chromosome 6 clone RP23-414I9, complete sequence Length = 184879 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 gttgaagtggtttctttaaga 52 ||||||||||||||||||||| Sbjct: 170629 gttgaagtggtttctttaaga 170649
>gb|AC121497.15| Mus musculus chromosome 6, clone RP23-2M23, complete sequence Length = 231059 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 32 gttgaagtggtttctttaaga 52 ||||||||||||||||||||| Sbjct: 163216 gttgaagtggtttctttaaga 163196
>emb|AL590012.6| Human DNA sequence from clone RP11-40I8 on chromosome X, complete sequence Length = 106773 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 tattttatactttgtatcttc 232 ||||||||||||||||||||| Sbjct: 48776 tattttatactttgtatcttc 48796
>gb|AC164153.2| Mus musculus chromosome 3, clone RP23-370M4, complete sequence Length = 187100 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 282 attgcttcttgtttactggcttgag 306 |||||||||||||||| |||||||| Sbjct: 49147 attgcttcttgtttacaggcttgag 49123
>emb|CR628362.8| Zebrafish DNA sequence from clone DKEY-74A12 in linkage group 18, complete sequence Length = 200732 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 aagaaaatggcatgttgtact 69 ||||||||||||||||||||| Sbjct: 51113 aagaaaatggcatgttgtact 51133
>emb|AL646050.7| Mouse DNA sequence from clone RP23-460G5 on chromosome 11 Contains a ribosomal protein L7 (Rpl7) pseudogene and a CpG island, complete sequence Length = 164018 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 209 agttattttatactttgtatcttct 233 |||||||||||||||||||| |||| Sbjct: 78918 agttattttatactttgtattttct 78894
>gb|AC090733.7| Homo sapiens chromosome 8, clone RP11-108D15, complete sequence Length = 165456 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 gtttctttaagaaaatggcat 61 ||||||||||||||||||||| Sbjct: 6108 gtttctttaagaaaatggcat 6128
>gb|AC068700.5| Homo sapiens chromosome 8, clone RP11-594N15, complete sequence Length = 182860 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 gtttctttaagaaaatggcat 61 ||||||||||||||||||||| Sbjct: 16272 gtttctttaagaaaatggcat 16252
>emb|AL954676.22| Zebrafish DNA sequence from clone CH211-86M2, complete sequence Length = 160611 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 aatgaagttattttatacttt 224 ||||||||||||||||||||| Sbjct: 80860 aatgaagttattttatacttt 80840
>dbj|AB016881.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXC17 Length = 27263 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 213 attttatactttgtatcttct 233 ||||||||||||||||||||| Sbjct: 19999 attttatactttgtatcttct 19979
>emb|CR387935.16| Zebrafish DNA sequence from clone CH211-212O1 in linkage group 18, complete sequence Length = 152685 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 aagaaaatggcatgttgtact 69 ||||||||||||||||||||| Sbjct: 141571 aagaaaatggcatgttgtact 141551
>gb|AC140406.3| Mus musculus BAC clone RP23-141L18 from 14, complete sequence Length = 213612 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 gtttctttaagaaaatggcat 61 ||||||||||||||||||||| Sbjct: 124998 gtttctttaagaaaatggcat 124978
>gb|AC079957.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-144I17, complete sequence Length = 196474 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 attttggatccagagttcat 253 |||||||||||||||||||| Sbjct: 42077 attttggatccagagttcat 42058
>gb|AC007576.3| Arabidopsis thaliana chromosome I BAC F7A19 genomic sequence, complete sequence Length = 112126 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 ctacatacaaaagttgaagt 39 |||||||||||||||||||| Sbjct: 92331 ctacatacaaaagttgaagt 92350
>emb|CR388129.11| Zebrafish DNA sequence from clone CH211-281L24 in linkage group 15, complete sequence Length = 96262 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 tttaagaaaatggcatgttgtact 69 ||||||||||||||||||| |||| Sbjct: 66379 tttaagaaaatggcatgttttact 66402
>gb|AC135643.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0023F01, complete sequence Length = 145009 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 acaaaagttgaagtggtttc 45 |||||||||||||||||||| Sbjct: 114519 acaaaagttgaagtggtttc 114538
>gb|AC159151.3| Equus caballus clone CH241-268N6, complete sequence Length = 123244 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 actggcttcaagtaccactt 166 |||||||||||||||||||| Sbjct: 15011 actggcttcaagtaccactt 15030
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 acaaaagttgaagtggtttc 45 |||||||||||||||||||| Sbjct: 26475201 acaaaagttgaagtggtttc 26475182
>gb|AC124905.3| Equus caballus clone CH241-184O19, complete sequence Length = 171209 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 actggcttcaagtaccactt 166 |||||||||||||||||||| Sbjct: 166178 actggcttcaagtaccactt 166197
>gb|AF165147.1|AF165147 Homo sapiens chromosome 21q22.1, PAC I2280, complete sequence Length = 146735 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 cacaattagcatccttcatg 139 |||||||||||||||||||| Sbjct: 46018 cacaattagcatccttcatg 45999
>emb|BX294392.3| Zebrafish DNA sequence from clone CH211-262O24 in linkage group 23, complete sequence Length = 141252 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 46 tttaagaaaatggcatgttgtact 69 ||||||||||||||||||| |||| Sbjct: 83086 tttaagaaaatggcatgttttact 83063
>emb|AL772341.12| Mouse DNA sequence from clone RP23-179N22 on chromosome 2, complete sequence Length = 219412 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 tgtactttgtcactcttgag 83 |||||||||||||||||||| Sbjct: 164960 tgtactttgtcactcttgag 164941
>emb|AL163247.2|HS21C047 Homo sapiens chromosome 21 segment HS21C047 Length = 340000 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 cacaattagcatccttcatg 139 |||||||||||||||||||| Sbjct: 164496 cacaattagcatccttcatg 164477
>emb|BX649416.15| Zebrafish DNA sequence from clone DKEY-1B17 in linkage group 22, complete sequence Length = 161525 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 cacaacatactacatacaaaagtt 34 |||||||||||||| ||||||||| Sbjct: 140062 cacaacatactacagacaaaagtt 140039
>emb|CR735101.11| Zebrafish DNA sequence from clone DKEY-211C15 in linkage group 19, complete sequence Length = 32655 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 aagaaaatggcatgttgtactttg 72 |||||||||||||||| ||||||| Sbjct: 19155 aagaaaatggcatgttttactttg 19132
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 acaaaagttgaagtggtttc 45 |||||||||||||||||||| Sbjct: 26800465 acaaaagttgaagtggtttc 26800446
>gb|AC133515.3| Mus musculus BAC clone RP23-236E15 from 1, complete sequence Length = 175639 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 ttgtcactcttgagtggcaa 89 |||||||||||||||||||| Sbjct: 144180 ttgtcactcttgagtggcaa 144199
>emb|AL929188.6| Zebrafish DNA sequence from clone CH211-273O6 in linkage group 23, complete sequence Length = 150865 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 46 tttaagaaaatggcatgttgtact 69 ||||||||||||||||||| |||| Sbjct: 113801 tttaagaaaatggcatgttttact 113778
>gb|DP000020.1| Equus caballus target 1 genomic scaffold Length = 1907055 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 actggcttcaagtaccactt 166 |||||||||||||||||||| Sbjct: 1798822 actggcttcaagtaccactt 1798841
>gb|AC078872.13| Homo sapiens 12q BAC RP11-542G14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166585 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 215 tttatactttgtatcttctatttt 238 ||||| |||||||||||||||||| Sbjct: 97453 tttattctttgtatcttctatttt 97430 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,091,260 Number of Sequences: 3902068 Number of extensions: 5091260 Number of successful extensions: 116388 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 116193 Number of HSP's gapped (non-prelim): 195 length of query: 571 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 548 effective length of database: 17,143,297,704 effective search space: 9394527141792 effective search space used: 9394527141792 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)