ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31l01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GRPE_MYCGA (Q7NBE4) Protein grpE (HSP-70 cofactor) 28 4.6
2ATPA_ACEWO (P50000) ATP synthase alpha chain, sodium ion specifi... 28 6.0

>GRPE_MYCGA (Q7NBE4) Protein grpE (HSP-70 cofactor)|
          Length = 298

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
 Frame = -1

Query: 238 PASVSDEKYLSRDNKSAGHDYP-------YSSGYRASDDVL 137
           P    DEKY+S  +K++  DYP         SGY+  D V+
Sbjct: 163 PGDKFDEKYMSASDKASDPDYPADHVCKVMKSGYKLYDRVV 203



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>ATPA_ACEWO (P50000) ATP synthase alpha chain, sodium ion specific (EC|
           3.6.3.15) (Na(+)-translocating ATPase alpha chain)
          Length = 501

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = -1

Query: 271 GFP-----PVIPYHPLPASVSDEKYLSRDNKSAGHDYPYSSGYRASDDVLPVDR 125
           GFP     P++  H  P  V     + R++ +     P  +GY+A D ++P+ R
Sbjct: 112 GFPVDGKGPIVTDHRRPVEVKAAGVIERESVNQ----PIQTGYKAIDSMIPIGR 161


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,222,240
Number of Sequences: 219361
Number of extensions: 500324
Number of successful extensions: 1052
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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