ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags31l01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470715.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1629 Score = 117 bits (59), Expect = 2e-23 Identities = 154/186 (82%) Strand = Plus / Minus Query: 32 gccagataacccgctgctgccagaaccaccactgtacccactgtaagcaccatagccacc 91 |||||||||||| ||||||||||||| |||||| || |||| ||||| ||||| || || Sbjct: 1590 gccagataacccactgctgccagaacgaccactatatccaccataagccccataacctcc 1531 Query: 92 tncggagacctgagagctgccataatttgcataacggtcaacaggaagcacatcgtctga 151 | | |||||||| |||||||||||| ||||||| | ||||| ||| | ||| ||||| Sbjct: 1530 tccagagacctgggagctgccataacttgcatagctgtcaatagggccaatatcatctga 1471 Query: 152 tgcacgatatccactagaatatggatagtcatgcccagcagacttattgtctctgcttag 211 ||||||||||||| ||||||||||| ||||||||| || |||| | ||||||| ||| Sbjct: 1470 gccacgatatccacttgaatatggataatcatgcccaagaggcttagtatctctgcctag 1411 Query: 212 atactt 217 |||||| Sbjct: 1410 atactt 1405 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 252 gggatcacaggtggaaaacctgataaagcaccttc 286 ||||| |||||||| |||||||||||||||||||| Sbjct: 1367 gggattacaggtgggaaacctgataaagcaccttc 1333
>dbj|AK101145.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026O12, full insert sequence Length = 2971 Score = 117 bits (59), Expect = 2e-23 Identities = 154/186 (82%) Strand = Plus / Minus Query: 32 gccagataacccgctgctgccagaaccaccactgtacccactgtaagcaccatagccacc 91 |||||||||||| ||||||||||||| |||||| || |||| ||||| ||||| || || Sbjct: 1679 gccagataacccactgctgccagaacgaccactatatccaccataagccccataacctcc 1620 Query: 92 tncggagacctgagagctgccataatttgcataacggtcaacaggaagcacatcgtctga 151 | | |||||||| |||||||||||| ||||||| | ||||| ||| | ||| ||||| Sbjct: 1619 tccagagacctgggagctgccataacttgcatagctgtcaatagggccaatatcatctga 1560 Query: 152 tgcacgatatccactagaatatggatagtcatgcccagcagacttattgtctctgcttag 211 ||||||||||||| ||||||||||| ||||||||| || |||| | ||||||| ||| Sbjct: 1559 gccacgatatccacttgaatatggataatcatgcccaagaggcttagtatctctgcctag 1500 Query: 212 atactt 217 |||||| Sbjct: 1499 atactt 1494 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 252 gggatcacaggtggaaaacctgataaagcaccttc 286 ||||| |||||||| |||||||||||||||||||| Sbjct: 1456 gggattacaggtgggaaacctgataaagcaccttc 1422
>dbj|AK069760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031F14, full insert sequence Length = 2121 Score = 117 bits (59), Expect = 2e-23 Identities = 154/186 (82%) Strand = Plus / Minus Query: 32 gccagataacccgctgctgccagaaccaccactgtacccactgtaagcaccatagccacc 91 |||||||||||| ||||||||||||| |||||| || |||| ||||| ||||| || || Sbjct: 1738 gccagataacccactgctgccagaacgaccactatatccaccataagccccataacctcc 1679 Query: 92 tncggagacctgagagctgccataatttgcataacggtcaacaggaagcacatcgtctga 151 | | |||||||| |||||||||||| ||||||| | ||||| ||| | ||| ||||| Sbjct: 1678 tccagagacctgggagctgccataacttgcatagctgtcaatagggccaatatcatctga 1619 Query: 152 tgcacgatatccactagaatatggatagtcatgcccagcagacttattgtctctgcttag 211 ||||||||||||| ||||||||||| ||||||||| || |||| | ||||||| ||| Sbjct: 1618 gccacgatatccacttgaatatggataatcatgcccaagaggcttagtatctctgcctag 1559 Query: 212 atactt 217 |||||| Sbjct: 1558 atactt 1553 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 252 gggatcacaggtggaaaacctgataaagcaccttc 286 ||||| |||||||| |||||||||||||||||||| Sbjct: 1515 gggattacaggtgggaaacctgataaagcaccttc 1481
>dbj|AK067678.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116I07, full insert sequence Length = 2834 Score = 117 bits (59), Expect = 2e-23 Identities = 154/186 (82%) Strand = Plus / Minus Query: 32 gccagataacccgctgctgccagaaccaccactgtacccactgtaagcaccatagccacc 91 |||||||||||| ||||||||||||| |||||| || |||| ||||| ||||| || || Sbjct: 1682 gccagataacccactgctgccagaacgaccactatatccaccataagccccataacctcc 1623 Query: 92 tncggagacctgagagctgccataatttgcataacggtcaacaggaagcacatcgtctga 151 | | |||||||| |||||||||||| ||||||| | ||||| ||| | ||| ||||| Sbjct: 1622 tccagagacctgggagctgccataacttgcatagctgtcaatagggccaatatcatctga 1563 Query: 152 tgcacgatatccactagaatatggatagtcatgcccagcagacttattgtctctgcttag 211 ||||||||||||| ||||||||||| ||||||||| || |||| | ||||||| ||| Sbjct: 1562 gccacgatatccacttgaatatggataatcatgcccaagaggcttagtatctctgcctag 1503 Query: 212 atactt 217 |||||| Sbjct: 1502 atactt 1497 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 252 gggatcacaggtggaaaacctgataaagcaccttc 286 ||||| |||||||| |||||||||||||||||||| Sbjct: 1459 gggattacaggtgggaaacctgataaagcaccttc 1425
>dbj|AK065781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040N11, full insert sequence Length = 3152 Score = 117 bits (59), Expect = 2e-23 Identities = 154/186 (82%) Strand = Plus / Minus Query: 32 gccagataacccgctgctgccagaaccaccactgtacccactgtaagcaccatagccacc 91 |||||||||||| ||||||||||||| |||||| || |||| ||||| ||||| || || Sbjct: 1735 gccagataacccactgctgccagaacgaccactatatccaccataagccccataacctcc 1676 Query: 92 tncggagacctgagagctgccataatttgcataacggtcaacaggaagcacatcgtctga 151 | | |||||||| |||||||||||| ||||||| | ||||| ||| | ||| ||||| Sbjct: 1675 tccagagacctgggagctgccataacttgcatagctgtcaatagggccaatatcatctga 1616 Query: 152 tgcacgatatccactagaatatggatagtcatgcccagcagacttattgtctctgcttag 211 ||||||||||||| ||||||||||| ||||||||| || |||| | ||||||| ||| Sbjct: 1615 gccacgatatccacttgaatatggataatcatgcccaagaggcttagtatctctgcctag 1556 Query: 212 atactt 217 |||||| Sbjct: 1555 atactt 1550 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 252 gggatcacaggtggaaaacctgataaagcaccttc 286 ||||| |||||||| |||||||||||||||||||| Sbjct: 1512 gggattacaggtgggaaacctgataaagcaccttc 1478
>dbj|AK062206.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H05, full insert sequence Length = 1545 Score = 117 bits (59), Expect = 2e-23 Identities = 154/186 (82%) Strand = Plus / Minus Query: 32 gccagataacccgctgctgccagaaccaccactgtacccactgtaagcaccatagccacc 91 |||||||||||| ||||||||||||| |||||| || |||| ||||| ||||| || || Sbjct: 1237 gccagataacccactgctgccagaacgaccactatatccaccataagccccataacctcc 1178 Query: 92 tncggagacctgagagctgccataatttgcataacggtcaacaggaagcacatcgtctga 151 | | |||||||| |||||||||||| ||||||| | ||||| ||| | ||| ||||| Sbjct: 1177 tccagagacctgggagctgccataacttgcatagctgtcaatagggccaatatcatctga 1118 Query: 152 tgcacgatatccactagaatatggatagtcatgcccagcagacttattgtctctgcttag 211 ||||||||||||| ||||||||||| ||||||||| || |||| | ||||||| ||| Sbjct: 1117 gccacgatatccacttgaatatggataatcatgcccaagaggcttagtatctctgcctag 1058 Query: 212 atactt 217 |||||| Sbjct: 1057 atactt 1052 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 252 gggatcacaggtggaaaacctgataaagcaccttc 286 ||||| |||||||| |||||||||||||||||||| Sbjct: 1014 gggattacaggtgggaaacctgataaagcaccttc 980
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 69.9 bits (35), Expect = 4e-09 Identities = 98/119 (82%) Strand = Plus / Plus Query: 99 acctgagagctgccataatttgcataacggtcaacaggaagcacatcgtctgatgcacga 158 ||||| |||||||||||| ||||||| | ||||| ||| | ||| ||||| ||||| Sbjct: 14711968 acctgggagctgccataacttgcatagctgtcaatagggccaatatcatctgagccacga 14712027 Query: 159 tatccactagaatatggatagtcatgcccagcagacttattgtctctgcttagatactt 217 |||||||| ||||||||||| ||||||||| || |||| | ||||||| ||||||||| Sbjct: 14712028 tatccacttgaatatggataatcatgcccaagaggcttagtatctctgcctagatactt 14712086 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 252 gggatcacaggtggaaaacctgataaagcaccttc 286 ||||| |||||||| |||||||||||||||||||| Sbjct: 14712124 gggattacaggtgggaaacctgataaagcaccttc 14712158 Score = 42.1 bits (21), Expect = 0.95 Identities = 53/64 (82%) Strand = Plus / Plus Query: 40 acccgctgctgccagaaccaccactgtacccactgtaagcaccatagccacctncggaga 99 |||| ||||||||||||| |||||| || |||| ||||| ||||| || ||| | |||| Sbjct: 14711828 acccactgctgccagaacgaccactatatccaccataagccccataacctcctccagaga 14711887 Query: 100 cctg 103 |||| Sbjct: 14711888 cctg 14711891
>gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genomic sequence, complete sequence Length = 130306 Score = 69.9 bits (35), Expect = 4e-09 Identities = 98/119 (82%) Strand = Plus / Plus Query: 99 acctgagagctgccataatttgcataacggtcaacaggaagcacatcgtctgatgcacga 158 ||||| |||||||||||| ||||||| | ||||| ||| | ||| ||||| ||||| Sbjct: 50880 acctgggagctgccataacttgcatagctgtcaatagggccaatatcatctgagccacga 50939 Query: 159 tatccactagaatatggatagtcatgcccagcagacttattgtctctgcttagatactt 217 |||||||| ||||||||||| ||||||||| || |||| | ||||||| ||||||||| Sbjct: 50940 tatccacttgaatatggataatcatgcccaagaggcttagtatctctgcctagatactt 50998 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 252 gggatcacaggtggaaaacctgataaagcaccttc 286 ||||| |||||||| |||||||||||||||||||| Sbjct: 51036 gggattacaggtgggaaacctgataaagcaccttc 51070 Score = 42.1 bits (21), Expect = 0.95 Identities = 53/64 (82%) Strand = Plus / Plus Query: 40 acccgctgctgccagaaccaccactgtacccactgtaagcaccatagccacctncggaga 99 |||| ||||||||||||| |||||| || |||| ||||| ||||| || ||| | |||| Sbjct: 50740 acccactgctgccagaacgaccactatatccaccataagccccataacctcctccagaga 50799 Query: 100 cctg 103 |||| Sbjct: 50800 cctg 50803
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 69.9 bits (35), Expect = 4e-09 Identities = 98/119 (82%) Strand = Plus / Plus Query: 99 acctgagagctgccataatttgcataacggtcaacaggaagcacatcgtctgatgcacga 158 ||||| |||||||||||| ||||||| | ||||| ||| | ||| ||||| ||||| Sbjct: 14706502 acctgggagctgccataacttgcatagctgtcaatagggccaatatcatctgagccacga 14706561 Query: 159 tatccactagaatatggatagtcatgcccagcagacttattgtctctgcttagatactt 217 |||||||| ||||||||||| ||||||||| || |||| | ||||||| ||||||||| Sbjct: 14706562 tatccacttgaatatggataatcatgcccaagaggcttagtatctctgcctagatactt 14706620 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 252 gggatcacaggtggaaaacctgataaagcaccttc 286 ||||| |||||||| |||||||||||||||||||| Sbjct: 14706658 gggattacaggtgggaaacctgataaagcaccttc 14706692 Score = 42.1 bits (21), Expect = 0.95 Identities = 53/64 (82%) Strand = Plus / Plus Query: 40 acccgctgctgccagaaccaccactgtacccactgtaagcaccatagccacctncggaga 99 |||| ||||||||||||| |||||| || |||| ||||| ||||| || ||| | |||| Sbjct: 14706362 acccactgctgccagaacgaccactatatccaccataagccccataacctcctccagaga 14706421 Query: 100 cctg 103 |||| Sbjct: 14706422 cctg 14706425
>emb|AL645491.15| Mouse DNA sequence from clone RP23-10H1 on chromosome X, complete sequence Length = 127402 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tacccactgtaagcaccatag 86 ||||||||||||||||||||| Sbjct: 20201 tacccactgtaagcaccatag 20221
>gb|BT018682.1| Zea mays clone EL01N0511F05.d mRNA sequence Length = 1447 Score = 40.1 bits (20), Expect = 3.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 233 agcaggcaaagggtgatatgggatcacaggtggaaa 268 |||||||||||| || || |||||||||| |||||| Sbjct: 813 agcaggcaaaggatggtaagggatcacagatggaaa 778
>ref|XM_846965.1| PREDICTED: Canis familiaris similar to t-complex-associated testis expressed 1 (LOC609664), mRNA Length = 1506 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 tggaaaacctgataaagcac 282 |||||||||||||||||||| Sbjct: 479 tggaaaacctgataaagcac 498
>gb|AC093608.3| Homo sapiens BAC clone RP11-700C8 from 4, complete sequence Length = 162015 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 gctgccataatttgcataac 126 |||||||||||||||||||| Sbjct: 150542 gctgccataatttgcataac 150523
>gb|AC117396.2| Homo sapiens 3 BAC RP11-89E16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 147103 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 tggaaaacctgataaagcac 282 |||||||||||||||||||| Sbjct: 92019 tggaaaacctgataaagcac 92038
>gb|BT023962.1| Zea mays clone EL01N0412B07 mRNA sequence Length = 2075 Score = 40.1 bits (20), Expect = 3.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 233 agcaggcaaagggtgatatgggatcacaggtggaaa 268 |||||||||||| || || ||||| ||||||||||| Sbjct: 1512 agcaggcaaaggatggtaagggataacaggtggaaa 1477
>gb|AY109452.1| Zea mays CL2657_1 mRNA sequence Length = 2231 Score = 40.1 bits (20), Expect = 3.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 233 agcaggcaaagggtgatatgggatcacaggtggaaa 268 |||||||||||| || || ||||| ||||||||||| Sbjct: 745 agcaggcaaaggatggtaagggataacaggtggaaa 780 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,139,265 Number of Sequences: 3902068 Number of extensions: 2139265 Number of successful extensions: 42888 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42817 Number of HSP's gapped (non-prelim): 62 length of query: 286 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 264 effective length of database: 17,147,199,772 effective search space: 4526860739808 effective search space used: 4526860739808 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
