ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags31k17 |
|---|---|
| Clone Library Name | barley_pub |
>ELOF1_ORYSA (Q8LHP0) Transcription elongation factor 1 homolog| Length = 89 Score = 141 bits (356), Expect = 1e-33 Identities = 64/68 (94%), Positives = 67/68 (98%) Frame = -2 Query: 528 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWID 349 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEA+CRICQE+FSTT+NALTEPIDIYSEWID Sbjct: 16 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWID 75 Query: 348 ECERVNAV 325 ECERVN V Sbjct: 76 ECERVNNV 83
>ELOF1_ARATH (Q8LEF3) Transcription elongation factor 1 homolog| Length = 120 Score = 127 bits (320), Expect = 2e-29 Identities = 58/66 (87%), Positives = 62/66 (93%) Frame = -2 Query: 528 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWID 349 MDKLDT+FSCPFCNHGSSVEC IDMK+LIG+A CRIC+ESFSTTI ALTE IDIYSEWID Sbjct: 16 MDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTITALTEAIDIYSEWID 75 Query: 348 ECERVN 331 ECERVN Sbjct: 76 ECERVN 81
>ELF1_YEAST (P36053) Transcription elongation factor 1| Length = 145 Score = 89.0 bits (219), Expect = 1e-17 Identities = 36/67 (53%), Positives = 49/67 (73%) Frame = -2 Query: 528 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWID 349 + KLDT F+C FCNH SV C +D KN IG +C+IC +SF T IN+L++P+D+YS+W D Sbjct: 16 VQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRINSLSQPVDVYSDWFD 75 Query: 348 ECERVNA 328 E VN+ Sbjct: 76 AVEEVNS 82
>ELOF1_CAEEL (Q9XVZ8) Transcription elongation factor 1 homolog| Length = 84 Score = 85.1 bits (209), Expect = 2e-16 Identities = 33/63 (52%), Positives = 45/63 (71%) Frame = -2 Query: 519 LDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWIDECE 340 LDT F+CPFCNH E ++D + +G +CR+C E F T IN L+EPID+YS+W+D CE Sbjct: 20 LDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTNINYLSEPIDVYSDWVDACE 79 Query: 339 RVN 331 + N Sbjct: 80 QAN 82
>ELOF1_DROME (Q8MQI6) Transcription elongation factor 1 homolog| Length = 82 Score = 79.3 bits (194), Expect = 8e-15 Identities = 31/66 (46%), Positives = 43/66 (65%) Frame = -2 Query: 528 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWID 349 ++ LD F+CPFCNH S E ++D + CR+C E F T IN L+EPID+Y++W+D Sbjct: 17 IEPLDQQFNCPFCNHEKSCEVKMDKSRNTAKITCRVCLEDFQTGINFLSEPIDVYNDWVD 76 Query: 348 ECERVN 331 CE N Sbjct: 77 ACETAN 82
>ELOF1_SCHPO (O13868) Transcription elongation factor 1 homolog| Length = 107 Score = 77.4 bits (189), Expect = 3e-14 Identities = 31/62 (50%), Positives = 43/62 (69%) Frame = -2 Query: 519 LDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWIDECE 340 LDT F+C FCNH SV C +D ++ +G +C+IC +S I AL+ PID+YS+WID C+ Sbjct: 19 LDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLITALSAPIDVYSDWIDACD 78 Query: 339 RV 334 V Sbjct: 79 AV 80
>ELOF1_MANSE (Q9U501) Transcription elongation factor 1 homolog| Length = 82 Score = 76.6 bits (187), Expect = 5e-14 Identities = 30/66 (45%), Positives = 41/66 (62%) Frame = -2 Query: 528 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWID 349 ++ LD F+CPFCNH S E ++D C +C E F TT N L+EPID+Y++W+D Sbjct: 17 IEPLDQQFNCPFCNHEKSCEVKMDRAKNTAMIQCTVCLEDFHTTTNVLSEPIDVYNDWVD 76 Query: 348 ECERVN 331 CE N Sbjct: 77 ACESAN 82
>ELOF1_MOUSE (P60003) Transcription elongation factor 1 homolog| Length = 83 Score = 76.3 bits (186), Expect = 7e-14 Identities = 30/63 (47%), Positives = 41/63 (65%) Frame = -2 Query: 519 LDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWIDECE 340 L+T F+CPFCNH S + ++D G +C +C E F T I L+EP+D+YS+WID CE Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACE 79 Query: 339 RVN 331 N Sbjct: 80 AAN 82
>ELOF1_HUMAN (P60002) Transcription elongation factor 1 homolog| Length = 83 Score = 76.3 bits (186), Expect = 7e-14 Identities = 30/63 (47%), Positives = 41/63 (65%) Frame = -2 Query: 519 LDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWIDECE 340 L+T F+CPFCNH S + ++D G +C +C E F T I L+EP+D+YS+WID CE Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACE 79 Query: 339 RVN 331 N Sbjct: 80 AAN 82
>ELOF1_ENCCU (Q8STS7) Transcription elongation factor 1 homolog| Length = 80 Score = 68.6 bits (166), Expect = 1e-11 Identities = 27/60 (45%), Positives = 39/60 (65%) Frame = -2 Query: 522 KLDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWIDEC 343 +L+ F+CP CNH + V+C + + G ANC +C+ SF+ N LT ID+YS W+DEC Sbjct: 18 RLEKRFNCPVCNHENVVQCTVKKTLMKGFANCSVCEASFACDANKLTTGIDVYSAWVDEC 77
>GLGA_PROMT (Q46LU1) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 487 Score = 32.0 bits (71), Expect = 1.6 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = +1 Query: 358 FAVYINRLSQRIYGGAEAFLADSTIRLTNQILHINSAFNAAPMVAERAG-KDRVELVHPL 534 F Y + LS+ IYGGA+AFL S + + A P+V + G D VE +P+ Sbjct: 333 FLTYDDALSRLIYGGADAFLMPSRFEPCGISQLLAMRYGAIPIVRKVGGLVDTVEPYNPM 392
>GLGA_SYNEL (Q8DKU2) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 474 Score = 29.6 bits (65), Expect = 7.7 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +1 Query: 364 VYINRLSQRIYGGAEAFLADSTIRLTNQILHINSAFNAAPMVAERAG 504 +Y + LS+RIYGGA+AF+ S I + P+V G Sbjct: 335 LYSDVLSRRIYGGADAFIMPSRFEPCGISQMIALRYGCVPIVRRTGG 381 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,218,058 Number of Sequences: 219361 Number of extensions: 1612641 Number of successful extensions: 4389 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4277 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4388 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
