>PDIA6_MEDSA (P38661) Probable protein disulfide-isomerase A6 precursor (EC|
           5.3.4.1) (P5)
          Length = 364

 Score =  127 bits (319), Expect = 2e-29
 Identities = 62/103 (60%), Positives = 81/103 (78%)
 Frame = -1

Query: 593 SKGQLTSEAGLVASLXALVKDFHSAADDKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAK 414
           +KGQLTSEAG+V  L  LVK+F +A D+++K + ++IEEE  KL G A ++GKIY+ V+K
Sbjct: 261 AKGQLTSEAGIVEDLDELVKEFVAANDEEKKAVFARIEEEVKKLEGSASRYGKIYLKVSK 320

Query: 413 KILQKGSDYTKKETERLHRLLEKSISPSKADEFAIKKNILSAF 285
           K L+KGSDY K E +RL RLLEKSISP+KADE  +KKNILS +
Sbjct: 321 KYLEKGSDYAKNEIQRLERLLEKSISPAKADELTLKKNILSTY 363

>PDIA6_ARATH (O22263) Probable protein disulfide-isomerase A6 precursor (EC|
           5.3.4.1) (P5)
          Length = 361

 Score =  124 bits (311), Expect = 2e-28
 Identities = 60/103 (58%), Positives = 82/103 (79%)
 Frame = -1

Query: 593 SKGQLTSEAGLVASLXALVKDFHSAADDKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAK 414
           SKGQLTS+AG+V SL ALVK+  +A++D++K +LS+IEEEA+ L G   ++GK+Y+ +AK
Sbjct: 255 SKGQLTSKAGIVESLDALVKELVAASEDEKKAVLSRIEEEASTLKGSTTRYGKLYLKLAK 314

Query: 413 KILQKGSDYTKKETERLHRLLEKSISPSKADEFAIKKNILSAF 285
             ++KGSDY  KETERL R+L KSISP KADE  +K+NIL+ F
Sbjct: 315 SYIEKGSDYASKETERLGRVLGKSISPVKADELTLKRNILTTF 357

>ERP38_NEUCR (Q92249) Protein disulfide-isomerase erp38 precursor (EC 5.3.4.1)|
           (ERp38)
          Length = 369

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
 Frame = -1

Query: 587 GQLTSEAGLVASLXALVKDFHSAADDKRKEILSKIEEEAAKLSGPA-VKHGKIYVNVAKK 411
           G L + AG +A+L  +V  +   A     E+  + +E    L   A +K+   Y+ V  K
Sbjct: 258 GGLDTVAGTIAALDEIVAKYTGGAS--LAEVAEEAKEAVKSLKNSAELKYADYYLRVLDK 315

Query: 410 ILQKGSDYTKKETERLHRLLEKS-ISPSKADEFAIKKNILSAF 285
            L K   Y  KE  RL  +L+K  ++P+K DE  +K N+L  F
Sbjct: 316 -LSKSEGYATKEFARLEGILKKGGLAPAKVDELTVKVNVLRKF 357

>TIGA_ASPNG (Q00216) Protein disulfide-isomerase tigA precursor (EC 5.3.4.1)|
          Length = 359

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
 Frame = -1

Query: 587 GQLTSEAGLVASLXALVKDFHSAADDKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAKKI 408
           G L ++AG +ASL  L+    SAAD     + + +++ A +L     K+ + YV VA K 
Sbjct: 257 GGLDTKAGTIASLDELIAST-SAAD-----LAAAVKKAATELKD---KYAQYYVKVADK- 306

Query: 407 LQKGSDYTKKETERLHRLLEKSIS-PSKADEFAIKKNILSAF 285
           L + ++Y  KE  RL ++L K  S P K D+   + NIL  F
Sbjct: 307 LSQNAEYAAKELARLEKILAKGGSAPEKVDDLISRSNILRKF 348

>PDI2_SCHPO (O13811) Protein disulfide-isomerase C17H9.14c precursor (EC|
           5.3.4.1)
          Length = 359

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
 Frame = -1

Query: 587 GQLTSEAGLVASLXALVKDFHSAADDKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAKKI 408
           G L S AG + +      +F   ++  ++ +L K+++ A + S    K+   Y  V +KI
Sbjct: 257 GTLLSTAGRIPTFDEFAAEFLDMSNAAKEVVLEKVKQLALEDSSRWTKY---YKKVFEKI 313

Query: 407 LQKGSDYTKKETERLHRLL-EKSISPSKADEFAIKKNILSAF 285
           L    ++  KE +RL +LL +KSI+ + AD+F  + NIL++F
Sbjct: 314 LND-ENWVHKEAKRLSKLLRQKSIALASADDFKTRLNILNSF 354

>ERP29_MOUSE (P57759) Endoplasmic reticulum protein ERp29 precursor|
          Length = 262

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = -1

Query: 566 GLVASLXALVKDFHSAAD-DKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAKKILQKGSD 390
           G + +  AL  +F  A+  + R+ IL + ++    +     K    Y+ +  KIL +G D
Sbjct: 158 GCLPAYDALAGEFIKASSIEARQAILKQGQDGLLSVKETEKKWASQYLKIMGKILDQGED 217

Query: 389 YTKKETERLHRLLEKSISPSKADEFAIKKNILSAF 285
           +   E  R+ +L+E  +S SK +E     NIL+AF
Sbjct: 218 FPASEMARIGKLIENKMSDSKKEELQKSLNILTAF 252

>ERP29_RAT (P52555) Endoplasmic reticulum protein ERp29 precursor (ERp31)|
          Length = 260

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
 Frame = -1

Query: 566 GLVASLXALVKDFHSAAD-DKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAKKILQKGSD 390
           G + +  AL   F  A+  + R+ IL + ++  + +     K    Y+ +  KIL +G D
Sbjct: 156 GCLPAYDALAGQFIEASSREARQAILKQGQDGLSGVKETDKKWASQYLKIMGKILDQGED 215

Query: 389 YTKKETERLHRLLEKSISPSKADEFAIKKNILSAF 285
           +   E  R+ +L+E  +S  K +E     NIL+AF
Sbjct: 216 FPASELARISKLIENKMSEGKKEELQRSLNILTAF 250

>ERP29_HUMAN (P30040) Endoplasmic reticulum protein ERp29 precursor (ERp31)|
           (ERp28)
          Length = 261

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
 Frame = -1

Query: 566 GLVASLXALVKDFHSAAD-DKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAKKILQKGSD 390
           G +    AL  +F  A+  + R+ +L + ++  + +     K  + Y+ +  KIL +G D
Sbjct: 156 GCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIMGKILDQGED 215

Query: 389 YTKKETERLHRLLEKS-ISPSKADEFAIKKNILSAF 285
           +   E  R+ RL+EK+ +S  K +E     NIL+AF
Sbjct: 216 FPASEMTRIARLIEKNKMSDGKKEELQKSLNILTAF 251

>ERP29_CHICK (P81628) Endoplasmic reticulum protein ERp29 (Fragment)|
          Length = 228

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = -1

Query: 593 SKGQLTSEAGLVASLXALVKDFHSAAD-DKRKEILSKIEEEAAKLSGPAVKHGKIYVNVA 417
           S G      G +     L   F S  D  +R+ +L K ++   K      K  + Y+ + 
Sbjct: 138 SNGIYLGMPGCLKEYDVLASKFMSVTDKSERQSLLKKGQQSLEKAKETEKKSAEQYLKIM 197

Query: 416 KKILQKGSDYTKKETERLHRLLEKS 342
            KIL++G ++   E  R+ +L+EK+
Sbjct: 198 SKILEQGEEFAANEVVRITKLIEKT 222

>LAMA2_HUMAN (P24043) Laminin alpha-2 chain precursor (Laminin M chain) (Merosin|
            heavy chain)
          Length = 3110

 Score = 35.8 bits (81), Expect = 0.096
 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
 Frame = -1

Query: 587  GQLTSEAGLVASLXALVKDFHSAADDKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAK-- 414
            G+L++     A+    VKD    A+D  K++L++I E    L G    + K+  +VAK  
Sbjct: 2021 GKLSAIPNDTAAKLQAVKDKARQANDTAKDVLAQITELHQNLDGLKKNYNKLADSVAKTN 2080

Query: 413  ---------KILQKGSDYTKKETERLHRLLEKSISPSKADEFAIKKNI 297
                     KI+       K   +   RL++K + P K  E  +KKNI
Sbjct: 2081 AVVKDPSKNKIIADADATVKNLEQEADRLIDK-LKPIKELEDNLKKNI 2127

>KAPR_USTMA (P49605) cAMP-dependent protein kinase regulatory subunit (PKA|
           regulatory subunit)
          Length = 522

 Score = 27.7 bits (60), Expect(2) = 1.5
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 436 RSM*TLQRRYCRRALTIQRRKLRGSIACWRSRSVLPKPMNSPSR 305
           R M T  RRY R  +  QRR+ + ++A   + +  P PM+S ++
Sbjct: 466 RRMATSIRRYMRMRMRTQRRRQQRALARSGADTSFPHPMDSSAK 509



 Score = 22.7 bits (47), Expect(2) = 1.5
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -1

Query: 593 SKGQLTSEAGLVASLXALVKDFHSAADDKRKEILSKIEEEAAKLSGP 453
           S+G    E  L+ +  A       A DD R  +++  E    +L GP
Sbjct: 409 SRGDYFGELALLNNRCAATVAAAGATDDARLRVVTMSERAFTRLLGP 455

>ZN544_HUMAN (Q6NX49) Zinc finger protein 544|
          Length = 715

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = -3

Query: 426 ERCKEDIAEGL*LYKEGN*EAPSLV-GEVDQSFQSR*IRHQEEHSFSFLLL 277
           +R +E+++  + +Y+ G  E PSLV G+V    QS  +R  +E+S  F++L
Sbjct: 97  DRAREELSHHVEVYRSGPEEPPSLVLGKVQD--QSNQLREHQENSLRFMVL 145

>RABE1_RAT (O35550) Rab GTPase-binding effector protein 1 (Rabaptin-5)|
           (Rabaptin-5alpha)
          Length = 862

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
 Frame = -1

Query: 545 ALVKDFHSAADDKRKEI-LSKIEE-----EAAKLSGPAVKHGKIYVNVAKKILQKGSDYT 384
           A +KD  + A+DK KE+  SK++E     EA K     ++     +N  K +LQ+ ++  
Sbjct: 196 AALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKL 255

Query: 383 KKETERLHRLLEK 345
           +KE   +  LLE+
Sbjct: 256 RKELHEVCHLLEQ 268

>RABE1_MOUSE (O35551) Rab GTPase-binding effector protein 1 (Rabaptin-5)|
           (Rabaptin-5alpha)
          Length = 862

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
 Frame = -1

Query: 545 ALVKDFHSAADDKRKEI-LSKIEE-----EAAKLSGPAVKHGKIYVNVAKKILQKGSDYT 384
           A +KD  + A+DK KE+  SK++E     EA K     ++     +N  K +LQ+ ++  
Sbjct: 196 AALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKL 255

Query: 383 KKETERLHRLLEK 345
           +KE   +  LLE+
Sbjct: 256 RKELHEVCHLLEQ 268

>RABE1_HUMAN (Q15276) Rab GTPase-binding effector protein 1 (Rabaptin-5)|
           (Rabaptin-5alpha) (Rabaptin-4) (NY-REN-17 antigen)
          Length = 862

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
 Frame = -1

Query: 545 ALVKDFHSAADDKRKEI-LSKIEE-----EAAKLSGPAVKHGKIYVNVAKKILQKGSDYT 384
           A +KD  + A+DK KE+  SK++E     EA K     ++     +N  K +LQ+ ++  
Sbjct: 196 AALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKL 255

Query: 383 KKETERLHRLLEK 345
           +KE   +  LLE+
Sbjct: 256 RKELHEVCHLLEQ 268

>H1_TETTH (P10156) Histone H1|
          Length = 163

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = -1

Query: 536 KDFHSAADDKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAKKILQKGSDYTKKETERLH- 360
           K  H+AA DK+       +E A K   P  K         KK ++K +   KKET++ H 
Sbjct: 78  KTVHAAAGDKKLSKKRPAKEAAKKAINPG-KKAAAQPKSTKKEVKKDNKTAKKETKKDHK 136

Query: 359 ---RLLEKSISPSKAD 321
              +  +K   P+K D
Sbjct: 137 PAKKEAKKETKPAKKD 152

>ATPF_BACPF (P22481) ATP synthase B chain (EC 3.6.3.14)|
          Length = 163

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 20/86 (23%), Positives = 38/86 (44%)
 Frame = -1

Query: 593 SKGQLTSEAGLVASLXALVKDFHSAADDKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAK 414
           SK  L    G++     ++ +  S+A+  RK+  + I E+   L    ++  +I  N  K
Sbjct: 25  SKFALKPLLGIMEKREQMINEQISSAEKNRKDSEAFIAEQRQALEQARMEANEIIQNAKK 84

Query: 413 KILQKGSDYTKKETERLHRLLEKSIS 336
              Q+G D  K       R+ E +++
Sbjct: 85  LSEQQGQDIVKAARNDAERIKESAVA 110

>PRIA_CHLTR (O84783) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase|
           priA) (Replication factor Y)
          Length = 753

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = -1

Query: 407 LQKGSDYTKKETERLHRLLEKSI 339
           L K SDYT KET+R+H L+++++
Sbjct: 666 LGKCSDYTLKETQRVHTLIKQNL 688

>Y100_METJA (Q57564) Hypothetical protein MJ0100|
          Length = 509

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = +3

Query: 285 ES*KNVLLDGEFIGFGRTDRLLQQAMEPLSFLLCIVRALLQYLLCNVHIDLSVLDSRTTE 464
           E+ K  +LDG+F+   R D L +   +P+   + +V+ +L       H ++S++     E
Sbjct: 355 ETLKQWILDGKFLLTERVDTLGRAENKPMKSPITLVKDILSKPPITAHSNISIM-----E 409

Query: 465 LCSLLFNFREDFLPLV 512
              +L     + LP+V
Sbjct: 410 AAKILIKHNINHLPIV 425


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,568,821
Number of Sequences: 219361
Number of extensions: 1523825
Number of successful extensions: 4992
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4991
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)