>KTNB1_ARATH (Q8H0T9) Katanin p80 WD40-containing subunit B1 homolog 1|
          Length = 837

 Score =  107 bits (267), Expect = 3e-23
 Identities = 54/134 (40%), Positives = 89/134 (66%)
 Frame = -1

Query: 637  IKGAIAAVAKLPDIAVQADVVSTLKGKLGLFNLDIFSSLLPVLAGLLNSKTERHTIVALE 458
            +K +I ++ K+ D AV ADV+  +  +  +  LD  +SLLP+L  LL S  ++H  V+L+
Sbjct: 702  VKNSIGSIEKMADNAVTADVLGIITERNEILTLDNCTSLLPLLTALLGSGMDQHLSVSLD 761

Query: 457  MLLDLIKIFGPVIHSTLSASSPVGVDLQAEQRLQRCTRCFNHLQKIVRALQPLMMRSGQS 278
            +LL L++++G  I+S+LSA + VGVD++AEQR++R +RCF  L+K+   L  L  R G  
Sbjct: 762  LLLKLVRLYGSPIYSSLSAPASVGVDIEAEQRIERYSRCFVELEKVKACLPSLARRGGLV 821

Query: 277  AQLAQELNMSLQDL 236
            A+   ELN++ Q++
Sbjct: 822  AKSVLELNLAFQEV 835

>KTNB1_BRARE (Q7ZUV2) Katanin p80 WD40-containing subunit B1 homolog|
          Length = 694

 Score = 70.5 bits (171), Expect = 4e-12
 Identities = 37/134 (27%), Positives = 72/134 (53%)
 Frame = -1

Query: 637 IKGAIAAVAKLPDIAVQADVVSTLKGKLGLFNLDIFSSLLPVLAGLLNSKTERHTIVALE 458
           +K ++ +   + D+++  DV++ +  K  L+ LD+ +S+LP +  LL S+ E +      
Sbjct: 559 VKTSLDSAVSMNDLSIVVDVLNIINLKPSLWKLDLCTSILPQIEELLQSRYESYVQTGCM 618

Query: 457 MLLDLIKIFGPVIHSTLSASSPVGVDLQAEQRLQRCTRCFNHLQKIVRALQPLMMRSGQS 278
            L  ++K F P+I  TL+A   VGVD+  E+R Q+C  C+  L+ +   ++    + G+ 
Sbjct: 619 SLKLILKRFWPLISDTLNAPPSVGVDITREERHQKCKACYKQLKNLSNVVKNRAEQVGRH 678

Query: 277 AQLAQELNMSLQDL 236
               +EL + +  L
Sbjct: 679 GSTFRELQLLMAPL 692

>KTNB1_MOUSE (Q8BG40) Katanin p80 WD40-containing subunit B1 (Katanin p80|
           subunit B1) (p80 katanin)
          Length = 658

 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 39/134 (29%), Positives = 72/134 (53%)
 Frame = -1

Query: 637 IKGAIAAVAKLPDIAVQADVVSTLKGKLGLFNLDIFSSLLPVLAGLLNSKTERHTIVALE 458
           IK ++ +   + D++V  D+++ +  K  L+ LD+ +++LP +  LL SK E +      
Sbjct: 524 IKTSVDSAVAINDLSVVVDLLNIVNQKASLWKLDLCTTVLPQIEKLLQSKYESYVQTGCT 583

Query: 457 MLLDLIKIFGPVIHSTLSASSPVGVDLQAEQRLQRCTRCFNHLQKIVRALQPLMMRSGQS 278
            L  +++ F P+I   L+A   VGVD+  E+RL +C  CF  L+ I   ++     SG+ 
Sbjct: 584 SLKLILQRFLPLITDILAAPPSVGVDISREERLHKCRLCFKQLKSISGLVKSKSGLSGRH 643

Query: 277 AQLAQELNMSLQDL 236
               +EL++ +  L
Sbjct: 644 GSAFRELHLLMASL 657

>KTNB1_HUMAN (Q9BVA0) Katanin p80 WD40-containing subunit B1 (Katanin p80|
           subunit B1) (p80 katanin)
          Length = 655

 Score = 68.6 bits (166), Expect = 2e-11
 Identities = 38/134 (28%), Positives = 72/134 (53%)
 Frame = -1

Query: 637 IKGAIAAVAKLPDIAVQADVVSTLKGKLGLFNLDIFSSLLPVLAGLLNSKTERHTIVALE 458
           IK ++ +   + D++V  D+++ +  K  L+ LD+ +++LP +  LL SK E +      
Sbjct: 521 IKTSVDSAVAINDLSVVVDLLNIVNQKASLWKLDLCTTVLPQIEKLLQSKYESYVQTGCT 580

Query: 457 MLLDLIKIFGPVIHSTLSASSPVGVDLQAEQRLQRCTRCFNHLQKIVRALQPLMMRSGQS 278
            L  +++ F P+I   L+A   VGVD+  E+RL +C  C+  L+ I   ++     SG+ 
Sbjct: 581 SLKLILQRFLPLITDMLAAPPSVGVDISREERLHKCRLCYKQLKSISGLVKSKSGLSGRH 640

Query: 277 AQLAQELNMSLQDL 236
               +EL++ +  L
Sbjct: 641 GSTFRELHLLMASL 654

>KTNB1_CHICK (Q5ZIU8) Katanin p80 WD40-containing subunit B1 (Katanin p80|
           subunit B1) (p80 katanin)
          Length = 657

 Score = 63.5 bits (153), Expect = 5e-10
 Identities = 36/129 (27%), Positives = 67/129 (51%)
 Frame = -1

Query: 637 IKGAIAAVAKLPDIAVQADVVSTLKGKLGLFNLDIFSSLLPVLAGLLNSKTERHTIVALE 458
           +K ++ A     D++V  D+++ +     L+ LD+ + +LP +  LL SK E +      
Sbjct: 523 MKNSVDAAVATNDLSVVVDLLNIVNQTASLWKLDLCTVVLPQIEKLLQSKYESYVQTGCT 582

Query: 457 MLLDLIKIFGPVIHSTLSASSPVGVDLQAEQRLQRCTRCFNHLQKIVRALQPLMMRSGQS 278
            L  +++ F P+I   L+A   VGVD+  E+RL +C  C+  L+ I   ++     SG+ 
Sbjct: 583 SLKLILQRFLPLITDILAAPPSVGVDITREERLHKCRLCYKQLKNISNIVKNKSGLSGRH 642

Query: 277 AQLAQELNM 251
               +EL++
Sbjct: 643 GSAFRELHL 651

>KTNB1_STRPU (O61585) Katanin p80 WD40-containing subunit B1 (Katanin p80|
           subunit B1) (p80 katanin)
          Length = 690

 Score = 59.3 bits (142), Expect = 9e-09
 Identities = 35/133 (26%), Positives = 70/133 (52%)
 Frame = -1

Query: 634 KGAIAAVAKLPDIAVQADVVSTLKGKLGLFNLDIFSSLLPVLAGLLNSKTERHTIVALEM 455
           K ++ +V  + D A+  D+++ +  K  L+NLD+   +LP L  LL+SK E +   +   
Sbjct: 558 KTSVESVVNMKDQAILVDILNIMLLKKSLWNLDMCVVVLPRLKELLSSKYENYVHTSCAC 617

Query: 454 LLDLIKIFGPVIHSTLSASSPVGVDLQAEQRLQRCTRCFNHLQKIVRALQPLMMRSGQSA 275
           L  ++K F  + +  +    P G+D+  E+R  +C++C+++L      ++     SG+  
Sbjct: 618 LKLILKNFTSLFNQNIKC-PPSGIDITREERYNKCSKCYSYLIATRGYVEEKQHVSGKLG 676

Query: 274 QLAQELNMSLQDL 236
              +EL++ L  L
Sbjct: 677 SSFRELHLLLDQL 689

>VBET_BPP4 (P13057) Protein beta|
          Length = 355

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = -1

Query: 613 AKLPDIAVQADVVSTLKGKLGLFNLDIFSSLLPVLAGLLNSKTERHTIVALEM 455
           AKL DI++QA V+  LKG +     ++ + +   L  L++  +  + IV +++
Sbjct: 114 AKLRDISIQARVLEELKGSIAFRIRNLNTDINKTLTSLVSMNSPENAIVFIDL 166

>MEI2_CAEEL (O44740) Meiotic spindle formation protein 2|
          Length = 280

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 391 VGVDLQAEQRLQRCTRCFNHLQKIVR 314
           +GVD+ AE+R  + T C ++ +KIV+
Sbjct: 224 IGVDVVAEERAAKATECIHNFRKIVK 249

>FGD6_MOUSE (Q69ZL1) FYVE, RhoGEF and PH domain-containing protein 6|
          Length = 1399

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = -1

Query: 403  ASSPVGVDLQAEQRLQRCTRCFNHLQKIVRALQPLMMRSGQSAQLAQELNMSLQDLVVF* 224
            +S+  G+D    Q  + C  CF  LQK+   L P +   G     +  L+  L  +    
Sbjct: 1225 SSNKYGLDYLKGQLARVCEHCFQELQKLDHQLSPRVGSPGNHKSPSSALSSVLHSI---- 1280

Query: 223  SPS*RRQSR 197
             PS R+Q +
Sbjct: 1281 -PSGRKQKK 1288

>SUZ2_DROME (P25172) Protein suppressor 2 of zeste (Protein posterior sex combs)|
          Length = 1368

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 19/114 (16%)
 Frame = +1

Query: 88   SLKCTNTGQELHTTTTNNRLPRHHMALPFSCGKKNGIYSDGVNLGFRRPPGLARTCSALE 267
            S+K  ++G    +T++++  P++  AL            +   L FR  P  A T +++ 
Sbjct: 1158 SIKAASSGNGSGSTSSSSAKPKNANALVRPQNASVRSIPNPSALAFRNQPAAASTAASIS 1217

Query: 268  Q-------------------VAPTGRSASSTVVELAQSSANG*NTGCNAATSVR 372
            +                   ++PT  S+SS+      SS++G ++GC+AATS R
Sbjct: 1218 KPLTVRAEEKPKVSTSNPGSLSPTNTSSSSS------SSSSG-SSGCSAATSPR 1264

>TUD_DROME (P25823) Maternal protein tudor|
          Length = 2515

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 20/73 (27%), Positives = 37/73 (50%)
 Frame = -1

Query: 490  KTERHTIVALEMLLDLIKIFGPVIHSTLSASSPVGVDLQAEQRLQRCTRCFNHLQKIVRA 311
            K +  T+   + LLD  K    V     SAS PV   ++   + +R  + + HLQK+V+A
Sbjct: 2097 KNKALTLTTFDALLDSCKGVVAVEFVNKSASPPV---VRLTTKDKRSLKIYEHLQKLVQA 2153

Query: 310  LQPLMMRSGQSAQ 272
               L+ +  ++++
Sbjct: 2154 ELKLIQKRNENSE 2166

>DNMBP_MOUSE (Q6TXD4) Dynamin-binding protein (Scaffold protein Tuba)|
          Length = 1580

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 47  GANYRLMNSQSSLARSNVQTRDKNYTPPRRTTGYPATIWRFHFPVAK-RMVSTLTASTWA 223
           G +++  +  S L     +TRD +  PPRRT    A  W F  P +  +  S+LTAS   
Sbjct: 431 GGSHQTSDPFSELVPLEARTRDYSSLPPRRTY---AQGWSFQKPASHLQRASSLTASRLD 487

Query: 224 SEDH 235
              H
Sbjct: 488 RPSH 491


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,385,235
Number of Sequences: 219361
Number of extensions: 1947217
Number of successful extensions: 5213
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5205
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)