ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31j23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL928981.7| Mouse DNA sequence from clone RP23-54O14 on chro... 42 2.2
2gb|AC138260.7| Mus musculus chromosome 6, clone RP23-247I19, com... 40 8.7
3ref|XM_954242.1| Neurospora crassa OR74A hypothetical protein (N... 40 8.7
4ref|XM_328950.1| Neurospora crassa OR74A hypothetical protein (N... 40 8.7
5gb|AC114643.9| Mus musculus chromosome 6, clone RP24-127D6, comp... 40 8.7
6gb|CP000107.1| Ehrlichia canis str. Jake, complete genome 40 8.7
7emb|AL590075.8| Human DNA sequence from clone RP11-462L13 on chr... 40 8.7
8gb|AC084165.1|AC084165 Arabidopsis thaliana chromosome 1 BAC F3C... 40 8.7
9gb|AC009430.2|AC009430 Homo sapiens, clone RP11-45O17, complete ... 40 8.7

>emb|AL928981.7| Mouse DNA sequence from clone RP23-54O14 on chromosome 2, complete
            sequence
          Length = 110096

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 538  catgatttttggctatattag 558
            |||||||||||||||||||||
Sbjct: 8178 catgatttttggctatattag 8198



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>gb|AC138260.7| Mus musculus chromosome 6, clone RP23-247I19, complete sequence
          Length = 197686

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    agactaaggatctcttggag 90
             ||||||||||||||||||||
Sbjct: 19118 agactaaggatctcttggag 19137



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>ref|XM_954242.1| Neurospora crassa OR74A hypothetical protein (NCU08245.1) partial
           mRNA
          Length = 1395

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 462 tgaaccaactcattctgccc 481
           ||||||||||||||||||||
Sbjct: 180 tgaaccaactcattctgccc 199



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>ref|XM_328950.1| Neurospora crassa OR74A hypothetical protein (NCU08245.1) partial
           mRNA
          Length = 1395

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 462 tgaaccaactcattctgccc 481
           ||||||||||||||||||||
Sbjct: 180 tgaaccaactcattctgccc 199



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>gb|AC114643.9| Mus musculus chromosome 6, clone RP24-127D6, complete sequence
          Length = 215696

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    agactaaggatctcttggag 90
             ||||||||||||||||||||
Sbjct: 60099 agactaaggatctcttggag 60080



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>gb|CP000107.1| Ehrlichia canis str. Jake, complete genome
          Length = 1315030

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 363     tcctctaccaatatgtatac 382
               ||||||||||||||||||||
Sbjct: 1226685 tcctctaccaatatgtatac 1226704



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>emb|AL590075.8| Human DNA sequence from clone RP11-462L13 on chromosome X, complete
             sequence
          Length = 135711

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 535   cagcatgatttttggctatattag 558
             |||||||||||| |||||||||||
Sbjct: 10081 cagcatgattttaggctatattag 10058



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>gb|AC084165.1|AC084165 Arabidopsis thaliana chromosome 1 BAC F3C3 genomic sequence, complete
             sequence
          Length = 90132

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   cataatgtttcactacaaac 123
             ||||||||||||||||||||
Sbjct: 52753 cataatgtttcactacaaac 52734



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>gb|AC009430.2|AC009430 Homo sapiens, clone RP11-45O17, complete sequence
          Length = 156454

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 535    cagcatgatttttggctatattag 558
              |||||||||||| |||||||||||
Sbjct: 142185 cagcatgattttaggctatattag 142208


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,377,629
Number of Sequences: 3902068
Number of extensions: 4377629
Number of successful extensions: 66146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66127
Number of HSP's gapped (non-prelim): 19
length of query: 639
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 616
effective length of database: 17,143,297,704
effective search space: 10560271385664
effective search space used: 10560271385664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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