>YQFB_BACSU (P54467) Hypothetical protein yqfB|
          Length = 139

 Score = 34.7 bits (78), Expect = 0.29
 Identities = 19/55 (34%), Positives = 35/55 (63%)
 Frame = -3

Query: 211 AAEEAEVRCQESAKHAENLEKDLAKLGRQISYLSKEVIELRGFTWLWVIQGLGLG 47
           A  EAE R +E+A++ + LE+DLA   ++  Y  ++++++   T   V+QG+ LG
Sbjct: 67  ARREAEERRRETARNLKGLERDLAAAKQKTVYTKQKMLQVNKDT---VVQGIVLG 118

>TUFT1_BOVIN (P27628) Tuftelin (Enamelin)|
          Length = 390

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = -3

Query: 343 LETADAHHSRKVDARFTDEELKLETWRNERELILVN-RKRDAALFAAEEAEVRCQESAKH 167
           L+ A+    +K +A   + + +L+    E + IL   R+ + AL       V CQ   + 
Sbjct: 215 LQRAEDRAEQK-EAEVGELQRRLQGMETEYQAILAKVREGETALEELRSKNVDCQAEQEK 273

Query: 166 AENLEKDLAKLGRQISYL 113
           A NLEK++A L  +I +L
Sbjct: 274 AANLEKEVAGLREKIHHL 291

>RAD50_PYRKO (Q5JHN1) DNA double-strand break repair rad50 ATPase|
          Length = 883

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = -3

Query: 283 LKLETWRNE-RELILVNRKRDAALFAAEEAEVRCQESAKHAENLEKDLAKLGRQISYLSK 107
           L L+ + N  + L+ V ++ DA + A E+     +   +   NLEK+L  + R+I+ +S 
Sbjct: 155 LGLDRYENSYKNLLDVRKEIDARIKAIEDYLKSTENIDELIGNLEKELTSVLREINEISP 214

Query: 106 EVIELRG 86
           ++ ELRG
Sbjct: 215 KLPELRG 221

>DNLI_SCHPO (P12000) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase|
           [ATP])
          Length = 768

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -3

Query: 379 SVLSAIQYGCYTLETADAHHSRKVDARFTDEELKLETWRNERELILVNRKRD 224
           SV  A   GCY  +T       K+   F++E L  ET+ N+ + I++++K+D
Sbjct: 622 SVYGAFLLGCYDPDTETVQSICKLGTGFSEEHL--ETFYNQLKDIVISKKKD 671

>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = +1

Query: 61   LGLPITM*SPSVQSLPYLGRRSVAPTLPSPSPGFRHA*QIPDT*PQLPLQQKVQRPSS 234
            L  PIT+  P + + PY G  + A   P  SPG        D+   LP     Q PSS
Sbjct: 2663 LAAPITLPGPRLMARPYFGAETRASESPDRSPGSSPRPWPKDSLELLPQPAPQQPPSS 2720

>GOGA4_HUMAN (Q13439) Golgin subfamily A member 4 (Trans-Golgi p230) (256 kDa|
            golgin) (Golgin-245) (Protein 72.1)
          Length = 2230

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = -3

Query: 292  DEELKLETWRNERELILVNRKRDAALFAAEEAEVRCQESAKHAENLEKDLAKLGRQISYL 113
            +E +K +T  NE +  L  +       A +E +++      H E LE DL K  ++ ++L
Sbjct: 1099 EEGVKQDTTLNELQEQLKQKSAHVNSLAQDETKLKA-----HLEKLEVDLNKSLKENTFL 1153

Query: 112  SKEVIELR 89
             ++++EL+
Sbjct: 1154 QEQLVELK 1161

>GOGB1_HUMAN (Q14789) Golgin subfamily B member 1 (Giantin) (Macrogolgin) (372 kDa|
            Golgi complex-associated protein) (GCP372)
          Length = 3259

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = -3

Query: 346  TLETADAHHSRKVDARFTDEELKLETWRNERELILVNRKRDAAL----FAAEEAEVRCQE 179
            +L+ +  H + ++D      +  L+     +E  L+NR+RDA L    F+    E   + 
Sbjct: 2742 SLQNSRDHANEELDELKRKYDASLKELAQLKEQGLLNRERDALLSETAFSMNSTE---EN 2798

Query: 178  SAKHAENLEKDLAKLGRQISYLSKEV 101
            S  H E L + L     Q+ +LS ++
Sbjct: 2799 SLSHLEKLNQQLLSKDEQLLHLSSQL 2824

>KINL_LEICH (P46865) Kinesin-like protein K39 (Fragment)|
          Length = 955

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = -3

Query: 283 LKLETWRNERELILVNRKRDAALFAAEEAEVRCQESAKHAENLEKDLAKLGRQ 125
           LK E  R EREL+    K+DAAL  ++    +  E A   E LE  +A+L R+
Sbjct: 505 LKEEQARKERELLKEMAKKDAAL--SKVRRRKDAEIASEREKLESTVAQLERE 555

>SYV_PICTO (Q6L1N5) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 768

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
 Frame = +1

Query: 523 RSSPLNRYRRVCKQAS-----LLLRQPYDSSLRC*F 615
           R++PL+ Y ++C++AS     +LL+  YD  L C F
Sbjct: 94  RNTPLDEYIKICREASRDAEKILLKNWYDLGLSCDF 129

>GNPI_MOUSE (O88958) Glucosamine-6-phosphate isomerase (EC 3.5.99.6)|
           (Glucosamine-6-phosphate deaminase) (GNPDA) (GlcN6P
           deaminase) (Oscillin)
          Length = 289

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = -3

Query: 385 ALSVLSAIQYGCYTLETADAHHSRKVDARFTDE----ELKLETWRNERELILVNRKRDAA 218
           A ++  AI+ G   + T  A           DE    ELK++T +  + L+LV+ K    
Sbjct: 209 AFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDP 268

Query: 217 LFAAEEAEVRCQESAK 170
           L++ +E E++  +SAK
Sbjct: 269 LYSIKEKEIQKSQSAK 284

>RRBP1_HUMAN (Q9P2E9) Ribosome-binding protein 1 (Ribosome receptor protein) (180|
            kDa ribosome receptor homolog) (ES/130-related protein)
          Length = 1410

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 25/78 (32%), Positives = 37/78 (47%)
 Frame = -3

Query: 322  HSRKVDARFTDEELKLETWRNERELILVNRKRDAALFAAEEAEVRCQESAKHAENLEKDL 143
            H +  +AR  + +L  E  R+   L+   + RDA    A +AE         A+  +  L
Sbjct: 940  HGQLQEARAENSQLT-ERIRSIEALLEAGQARDAQDVQASQAE---------ADQQQTRL 989

Query: 142  AKLGRQISYLSKEVIELR 89
             +L  Q+S L KE IELR
Sbjct: 990  KELESQVSGLEKEAIELR 1007

>CAP3C_STRPN (Q54800) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)|
           (UDP-glucose pyrophosphorylase) (UDPGP)
           (Alpha-D-glucosyl-1-phosphate uridylyltransferase)
           (Uridine diphosphoglucose pyrophosphorylase)
          Length = 306

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = -1

Query: 240 LIGRGTLHFLLQRKLRSGVRNLLSMPKTWRRTWQSWGD 127
           ++ R T+HF+++  LRSG+ ++L +    +R+ + + D
Sbjct: 32  IVDRPTIHFVIEEALRSGIEDILVVTGKSKRSIEDYFD 69

>SYD_CHLPN (Q9Z7P2) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 584

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 648 RYVLSGFLDFVKSTA*TGIVWLSQQEGSLLAD 553
           R  L G+ +FVK     G+VW+  QEG + ++
Sbjct: 336 RKQLDGYTEFVKRYGAMGLVWIKNQEGKVASN 367


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,125,515
Number of Sequences: 219361
Number of extensions: 2028329
Number of successful extensions: 5742
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5742
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6969622431
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)