>DDX41_HUMAN (Q9UJV9) Probable ATP-dependent RNA helicase DDX41 (EC 3.6.1.-)|
           (DEAD box protein 41) (DEAD box protein abstrakt
           homolog)
          Length = 622

 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 47/86 (54%), Positives = 59/86 (68%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKESGVKG 457
           R G TGIATTFINK   E+ L+DLK LL EAKQ++PPVL  L       E++    G +G
Sbjct: 525 RSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLHC---GDESMLDIGGERG 581

Query: 456 CAFCGGLGHRLADCPKLEHQKSVAIA 379
           CAFCGGLGHR+ DCPKLE  ++  ++
Sbjct: 582 CAFCGGLGHRITDCPKLEAMQTKQVS 607

>DDX41_MOUSE (Q91VN6) Probable ATP-dependent RNA helicase DDX41 (EC 3.6.1.-)|
           (DEAD box protein 41)
          Length = 622

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 46/86 (53%), Positives = 58/86 (67%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKESGVKG 457
           R G TGIATTFINK   E+ L+DLK LL EAKQ++PP L  L       E++    G +G
Sbjct: 525 RSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPGLQVLHC---GDESMLDIGGERG 581

Query: 456 CAFCGGLGHRLADCPKLEHQKSVAIA 379
           CAFCGGLGHR+ DCPKLE  ++  ++
Sbjct: 582 CAFCGGLGHRITDCPKLEAMQTKQVS 607

>ABS_DROME (Q9V3C0) ATP-dependent RNA helicase abstrakt (EC 3.6.1.-) (DEAD box|
           protein abstrakt)
          Length = 619

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 39/78 (50%), Positives = 47/78 (60%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKESGVKG 457
           R    G+ATT INK   ++ LLDLKHLL E KQ +P  L EL    E       +S   G
Sbjct: 521 RSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDELAPETEHQHLDLGDS--HG 578

Query: 456 CAFCGGLGHRLADCPKLE 403
           C +CGGLGHR+ +CPKLE
Sbjct: 579 CTYCGGLGHRITECPKLE 596

>DED1_NEUCR (Q9P6U9) ATP-dependent RNA helicase ded-1 (EC 3.6.1.-)|
          Length = 688

 Score = 38.1 bits (87), Expect = 0.022
 Identities = 28/70 (40%), Positives = 34/70 (48%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKESGVKG 457
           R G TGIAT F N+      + +L  LLKEA Q +P  L          E IA+ES    
Sbjct: 546 RAGNTGIATAFFNRG-NRGVVRELLELLKEANQEVPAFL----------ETIARES---- 590

Query: 456 CAFCGGLGHR 427
            +F GG G R
Sbjct: 591 -SFGGGRGGR 599

>DED1_GIBZE (Q4I7K4) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)|
          Length = 675

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 28/70 (40%), Positives = 33/70 (47%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKESGVKG 457
           R G TGIAT F N+      + +L  LLKEA Q +P  L          E IA+ES   G
Sbjct: 538 RAGNTGIATAFFNRG-NRGIVRELMDLLKEANQEVPAFL----------ETIARESSFGG 586

Query: 456 CAFCGGLGHR 427
               GG G R
Sbjct: 587 ----GGRGGR 592

>DED1_ASPOR (Q2UGK3) ATP-dependent RNA helicase ded1 (EC 3.6.1.-)|
          Length = 675

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKE-SGVK 460
           R G TGIAT F N+      + DL  LLKEA Q +P  L          E+IA+E SG  
Sbjct: 541 RAGNTGIATAFFNRG-NRGVVRDLIDLLKEAHQEVPSFL----------ESIAREGSGYG 589

Query: 459 GCAFCGGLG 433
           G    GG G
Sbjct: 590 GRGGRGGRG 598

>DED1_ASPFU (Q4WP13) ATP-dependent RNA helicase ded1 (EC 3.6.1.-)|
          Length = 674

 Score = 36.6 bits (83), Expect = 0.064
 Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKE-SGVK 460
           R G TGIAT F N++     + +L  LLKEA Q +P  L          E+IA+E SG  
Sbjct: 543 RAGNTGIATAFFNRS-NRGVVRELIDLLKEAHQEVPSFL----------ESIAREGSGYG 591

Query: 459 GCAFCGGLG 433
           G    GG G
Sbjct: 592 GRGGRGGRG 600

>DBP1_YEAST (P24784) ATP-dependent RNA helicase DBP1 (EC 3.6.1.-) (DEAD box|
           protein 1) (Helicase CA1)
          Length = 617

 Score = 36.2 bits (82), Expect = 0.084
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAEL 511
           R G TG+AT+F N N  +  +  L  +L EA Q +P  L++L
Sbjct: 504 RAGNTGVATSFFNSN-NQNIVKGLMEILNEANQEVPTFLSDL 544

>DED1_KLULA (Q6CLR3) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)|
          Length = 627

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKESGVKG 457
           R G TG+ATTF N+   +    +L  LL EA Q +P  L  ++      EA +   G +G
Sbjct: 509 RAGNTGVATTFFNRG-NKNVAKELVSLLSEANQEVPSFLTTIM-----REASSGRGGARG 562

>DDX3X_MOUSE (Q62167) ATP-dependent RNA helicase DDX3X (EC 3.6.1.-) (DEAD box|
           protein 3, X-chromosomal) (DEAD box RNA helicase DEAD3)
           (mDEAD3) (Embryonic RNA helicase) (D1Pas1-related
           sequence 2)
          Length = 661

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 25/70 (35%), Positives = 31/70 (44%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKESGVKG 457
           R G  G+AT+F N+     T  DL  LL EAKQ +P  L  +    E     +     K 
Sbjct: 533 RVGNLGLATSFFNERNINIT-KDLLDLLVEAKQEVPSWLENMA--FEHHYKGSSRGRSKS 589

Query: 456 CAFCGGLGHR 427
             F GG G R
Sbjct: 590 SRFSGGFGAR 599

>DED1_CANGA (Q8TFK8) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)|
          Length = 617

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAE 514
           R G TG+AT F N++     +  L  +L+EA Q IPP L +
Sbjct: 495 RAGNTGVATAFFNRD-NNNIVKGLYEILEEANQEIPPFLED 534

>DDX3Y_MOUSE (Q62095) ATP-dependent RNA helicase DDX3Y (EC 3.6.1.-) (DEAD box|
           protein 3, Y-chromosomal) (DEAD-box RNA helicase DEAD2)
           (mDEAD2) (D1Pas1-related sequence 1)
          Length = 658

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKESGVKG 457
           R G  G+AT+F N+     T  DL  LL EAKQ +P  L          E++A E   KG
Sbjct: 533 RVGNLGLATSFFNERNLNIT-KDLLDLLVEAKQEVPSWL----------ESMAYEHHYKG 581

Query: 456 CA-------FCGGLGHR 427
            +       F GG G R
Sbjct: 582 SSRGRSKSRFSGGFGAR 598

>DDX3X_HUMAN (O00571) ATP-dependent RNA helicase DDX3X (EC 3.6.1.-) (DEAD box|
           protein 3, X-chromosomal) (Helicase-like protein 2)
           (HLP2) (DEAD box, X isoform)
          Length = 661

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 25/70 (35%), Positives = 31/70 (44%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKESGVKG 457
           R G  G+AT+F N+     T  DL  LL EAKQ +P  L  +    E     +     K 
Sbjct: 533 RVGNLGLATSFFNERNINIT-KDLLDLLVEAKQEVPSWLENMA--YEHHYKGSSRGRSKS 589

Query: 456 CAFCGGLGHR 427
             F GG G R
Sbjct: 590 SRFSGGFGAR 599

>PRP11_SCHPO (Q9P7C7) Pre-mRNA-processing ATP-dependent RNA helicase prp11 (EC|
           3.6.1.-)
          Length = 1014

 Score = 34.7 bits (78), Expect = 0.24
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKESGVKG 457
           R G TG+A TFI   Q E   +D+   LK +KQ +P  L  L     +     KE    G
Sbjct: 761 RAGHTGVAVTFITPEQ-EKYAVDIAKALKMSKQPVPKELQTLASQFLEKVKAGKEKAAGG 819

>DED1_DEBHA (Q6BU54) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)|
          Length = 630

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 25/66 (37%), Positives = 30/66 (45%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKESGVKG 457
           R G  GIAT F N+N  +  +  L  LL EA Q IP  L            IA+ES   G
Sbjct: 506 RAGNIGIATAFFNRN-NKNIVKGLVDLLTEANQEIPDFL----------NKIARESAFGG 554

Query: 456 CAFCGG 439
            +  GG
Sbjct: 555 KSMRGG 560

>DDX3Y_PANTR (Q6GVM6) ATP-dependent RNA helicase DDX3Y (EC 3.6.1.-) (DEAD box|
           protein 3, Y-chromosomal)
          Length = 660

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 25/70 (35%), Positives = 30/70 (42%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKESGVKG 457
           R G  G+AT+F N+     T  DL  LL EAKQ +P  L  +    E           K 
Sbjct: 532 RVGNLGLATSFFNEKNINIT-KDLLDLLVEAKQEVPSWLENMA--YEHQYKGGSRGRSKS 588

Query: 456 CAFCGGLGHR 427
             F GG G R
Sbjct: 589 NRFSGGFGAR 598

>PRP5_ASPFU (Q4WT99) Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC|
            3.6.1.-)
          Length = 1211

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = -2

Query: 636  RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDP-LEDAEAIAKESGVK 460
            R G TG A TF+ + Q E   +D+   L+++ Q++P  + ++VD  LE  +A  +++   
Sbjct: 920  RAGNTGTAVTFLTEEQ-ERYSVDIAKALRQSGQKVPEPVQKMVDSFLEKVKAGKEKASAS 978

Query: 459  G 457
            G
Sbjct: 979  G 979

>GAG_JSRV (P31622) Gag polyprotein [Contains: Core protein p10; Core protein|
           p18; Core protein p12; Core protein p27; Core protein
           p14; Core protein p4]
          Length = 612

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = -2

Query: 477 KESGVKGCAFCGGLGHRLADCPKLEHQKSV 388
           ++SG  GC  CG  GHR A CP+ +HQ SV
Sbjct: 502 QKSGNSGCFVCGQPGHRAAVCPQ-KHQTSV 530

>DED1_ASHGO (Q75B50) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)|
          Length = 623

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAEL 511
           R G TG+AT F N+   +  + +L  +L+EA Q +P  L+++
Sbjct: 495 RAGNTGLATAFFNRG-NKNVVKELVDILEEANQEVPSFLSQI 535

>DDX3Y_HUMAN (O15523) ATP-dependent RNA helicase DDX3Y (EC 3.6.1.-) (DEAD box|
           protein 3, Y-chromosomal)
          Length = 660

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 25/70 (35%), Positives = 30/70 (42%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKESGVKG 457
           R G  G+AT+F N+     T  DL  LL EAKQ +P  L  +    E           K 
Sbjct: 532 RVGNLGLATSFFNEKNMNIT-KDLLDLLVEAKQEVPSWLENMA--YEHHYKGGSRGRSKS 588

Query: 456 CAFCGGLGHR 427
             F GG G R
Sbjct: 589 NRFSGGFGAR 598

>DED1_CANAL (Q5A4E2) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)|
          Length = 672

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAEL 511
           R G  GIAT F N+N  +  +  L  LL EA Q +P  L ++
Sbjct: 536 RAGNVGIATAFFNRN-NKNVVKGLIELLSEANQEVPDFLTKI 576

>DDX3Y_PONPY (Q5RF43) ATP-dependent RNA helicase DDX3Y (EC 3.6.1.-) (DEAD box|
           protein 3, Y-chromosomal)
          Length = 658

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKESGVKG 457
           R G  G+AT+F N+     T  DL  LL EAKQ +P  L          E +A E   KG
Sbjct: 532 RVGNLGLATSFFNEKNMNIT-KDLLDLLVEAKQEVPSWL----------ENMAYEHHYKG 580

Query: 456 CA------FCGGLGHR 427
            +      F GG G R
Sbjct: 581 GSRGRSKRFSGGFGAR 596

>AN3_XENLA (P24346) Putative ATP-dependent RNA helicase an3 (EC 3.6.1.-)|
          Length = 697

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 23/68 (33%), Positives = 30/68 (44%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKESGVKG 457
           R G  G+AT+F N+     T  DL  LL EAKQ +P  L  +     +    +   G   
Sbjct: 575 RVGNLGLATSFFNEKNINIT-KDLLDLLVEAKQEVPSWLENMA---YEQHHKSSSRGRSK 630

Query: 456 CAFCGGLG 433
             F GG G
Sbjct: 631 SRFSGGFG 638

>PL10_MOUSE (P16381) Putative ATP-dependent RNA helicase Pl10 (EC 3.6.1.-)|
          Length = 660

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKESGVKG 457
           R G  G+AT+F N+     T  DL  LL EAKQ +P  L          E +A E   KG
Sbjct: 533 RVGNLGLATSFFNERNINIT-KDLLDLLVEAKQEVPSWL----------ENMAFEHHYKG 581

Query: 456 -------CAFCGGLGHR 427
                    F GG G R
Sbjct: 582 GSRGRSKSRFSGGFGAR 598

>DBP2_EMENI (Q5B0J9) ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)|
          Length = 563

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELV 508
           R G  G A TF   +  +    DL  +L EAKQ+I P LAE+V
Sbjct: 480 RAGAKGTAITFFTTDNAKQAR-DLVTILSEAKQQIDPRLAEMV 521

>DBP2_ASPOR (Q2U070) ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)|
          Length = 554

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELV 508
           R G  G A TF   + ++    DL  +L EAKQ+I P LAE+V
Sbjct: 470 RAGAKGTAITFFTTDNSKQAR-DLVTILTEAKQQIDPRLAEMV 511

>DED1_YARLI (Q6CB69) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)|
          Length = 618

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVL 520
           R G TGIAT F N+   +  + +L  +LKEA Q +P  L
Sbjct: 511 RAGNTGIATAFFNRG-NKGIVRELIDILKEAHQDVPQFL 548

>DED1_YEAST (P06634) ATP-dependent RNA helicase DED1 (EC 3.6.1.-) (DEAD box|
           protein 1)
          Length = 604

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKESG 466
           R G TG+AT F N ++    +  L  +L EA Q +P  L + +     + + ++  G
Sbjct: 492 RAGNTGLATAFFN-SENSNIVKGLHEILTEANQEVPSFLKDAMMSAPGSRSNSRRGG 547

>CDC16_MOUSE (Q8R349) Cell division cycle protein 16 homolog (Anaphase-promoting|
           complex subunit 6) (APC6) (Cyclosome subunit 6)
          Length = 620

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 470 VVSKDVHSVVALGIVLLTARSWSTRSLWRLPALEEI-TMAVEVTVEKYDYII 318
           +  +D   +  +G+V      W T   W L ALE+I  +  EVTV+K++ ++
Sbjct: 397 IAPEDPFVIHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL 448

>DBP2_ASPFU (Q4X195) ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)|
          Length = 547

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAEL 511
           R G  G A TF     ++    DL  +L EAKQ+I P LAE+
Sbjct: 461 RAGAKGTAITFFTTENSKQAR-DLVTILTEAKQQIDPRLAEM 501

>CDC16_HUMAN (Q13042) Cell division cycle protein 16 homolog (CDC16Hs) (Anaphase|
           promoting complex subunit 6) (APC6) (Cyclosome subunit
           6)
          Length = 620

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 470 VVSKDVHSVVALGIVLLTARSWSTRSLWRLPALEEI-TMAVEVTVEKYDYII 318
           +  +D   +  +G+V      W T   W L ALE+I  +  EVTV+K++ ++
Sbjct: 397 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL 448

>Y394_DEIRA (Q9RXC1) Hypothetical protein DR0394|
          Length = 342

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -2

Query: 573 LDLKHLLKEAKQRIPPVLAELVDPLEDAEAIAKESGVKGCAFCGGL 436
           LDL HLL E  +++ P+L E  D     EA A+ +  +  A   GL
Sbjct: 168 LDLNHLLTEPLRQMRPLLTEFPDLAAPLEAAAERTQARLTALAPGL 213

>GAG_SIVGB (P22381) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 502

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 462 KGCAFCGGLGHRLADCPKLEHQKSV 388
           KGC  CG + H+ A CPK   Q+ V
Sbjct: 407 KGCWNCGAMDHQKAQCPKPAQQQRV 431

>PRP28_GIBZE (Q4I7F9) Pre-mRNA splicing ATP-dependent RNA helicase PRP28 (EC|
           3.6.1.-)
          Length = 721

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLL-KEAKQRIPPVL----AELVDPLEDAEAIAKE 472
           R GK+G+A TF+     E T+ DLK +L K +  ++P  L    A    P+  A+    E
Sbjct: 654 RAGKSGVAITFLGPEDHE-TMYDLKQILSKSSISKVPEELRRHEAAQSKPVRGAKKDKDE 712

Query: 471 SGVKG 457
              KG
Sbjct: 713 GSGKG 717

>DBP2_NEUCR (Q7SBC6) ATP-dependent RNA helicase dbp-2 (EC 3.6.1.-)|
          Length = 562

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -2

Query: 636 RCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAEL 511
           R G  G A TF   + ++    +L  +L+EAKQ+I P LAE+
Sbjct: 474 RAGAKGTAITFFTTDNSKQAR-ELVGVLQEAKQQIDPRLAEM 514


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,338,963
Number of Sequences: 219361
Number of extensions: 1505330
Number of successful extensions: 4285
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 4089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4281
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)