ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31j15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 262 1e-66
2dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic D... 262 1e-66
3dbj|AK060595.1| Oryza sativa (japonica cultivar-group) cDNA clon... 262 1e-66
4gb|AY108346.1| Zea mays PCO139599 mRNA sequence 167 6e-38
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 84 6e-13
6dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic D... 84 6e-13
7ref|NM_119491.1| Arabidopsis thaliana ATP binding / ATP-dependen... 50 0.009
8emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosome 4, ... 50 0.009
9emb|AL035678.1|ATF17M5 Arabidopsis thaliana DNA chromosome 4, BA... 50 0.009
10gb|AF067220.2| Caenorhabditis elegans cosmid C33E10, complete se... 46 0.14
11ref|NM_078403.1| Caenorhabditis elegans C33E10.5 (C33E10.5) mRNA... 46 0.14
12gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 42 2.2
13gb|AC087379.4| Homo sapiens chromosome 11, clone RP11-396O20, co... 42 2.2
14gb|AC012464.25| Homo sapiens 12 BAC RP11-1060G2 (Roswell Park Ca... 42 2.2
15emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 42 2.2
16gb|AE015451.1| Pseudomonas putida KT2440 complete genome 42 2.2
17emb|AL845426.9| Mouse DNA sequence from clone RP23-289M11 on chr... 42 2.2
18gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome... 40 8.7
19gb|AY324310.1| Anopheles gambiae insulin-like peptide 4 precurso... 40 8.7
20gb|AE009173.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 8.7
21emb|CR753817.13| Zebrafish DNA sequence from clone DKEY-195M11 i... 40 8.7
22gb|AC010797.4|ATAC010797 Arabidopsis thaliana chromosome III BAC... 40 8.7
23gb|AC104906.6| Mus musculus chromosome 10, clone RP24-374K6, com... 40 8.7
24emb|AL136987.11| Human DNA sequence from clone RP5-1011O1 on chr... 40 8.7
25gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Canc... 40 8.7
26emb|AL132775.29|HSDJ46C2 Human DNA sequence from clone RP1-46C2 ... 40 8.7
27emb|AL606631.2|OSJN00069 Oryza sativa genomic DNA, chromosome 4,... 40 8.7
28gb|AC114786.4| Homo sapiens BAC clone RP11-618I10 from 4, comple... 40 8.7
29emb|BX323816.6| Zebrafish DNA sequence from clone DKEY-38N6, com... 40 8.7
30gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 8.7
31gb|AC093795.3| Homo sapiens BAC clone RP11-299P3 from 4, complet... 40 8.7
32gb|AC093864.3| Homo sapiens BAC clone RP11-557J10 from 4, comple... 40 8.7
33gb|AC069494.8| Homo sapiens chromosome 18, clone RP11-743K16, co... 40 8.7
34gb|AC009660.15| Homo sapiens chromosome 15, clone RP11-424J10, c... 40 8.7
35gb|AC157950.2| Mus musculus BAC clone RP23-128A23 from chromosom... 40 8.7
36gb|AC157996.2| Mus musculus BAC clone RP24-194J17 from chromosom... 40 8.7
37gb|AC159468.4| Mus musculus 10 BAC RP23-335A3 (Roswell Park Canc... 40 8.7
38emb|BX322550.7| Zebrafish DNA sequence from clone DKEY-202N14 in... 40 8.7
39dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
40dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
41gb|AC157525.2| Pan troglodytes BAC clone CH251-519D18 from chrom... 40 8.7
42gb|AC010982.5| Homo sapiens BAC clone RP11-475I16 from 2, comple... 40 8.7
43gb|AC109327.10| Homo sapiens chromosome 17, clone RP11-93C20, co... 40 8.7
44gb|AC120024.22| Homo sapiens chromosome 17, clone CTD-2526A2, co... 40 8.7
45dbj|AK180936.1| Mus musculus cDNA, clone:Y0G0116G06, strand:minu... 40 8.7
46gb|AY365588.1| HIV-1 isolate 98897 from Argentina pol protein (p... 40 8.7
47emb|AL805951.6| Mouse DNA sequence from clone RP23-326P3 on chro... 40 8.7 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  262 bits (132), Expect = 1e-66
 Identities = 267/312 (85%)
 Strand = Plus / Plus

                                                                           
Query: 326     aatcatatttctccacggtaacctccaccgccatagtaatctcttctagagccggcaatc 385
               |||||||||||||| | ||| |||||||||||||||||||||||||||||||| || |||
Sbjct: 2766795 aatcatatttctcctctgtagcctccaccgccatagtaatctcttctagagcccgcgatc 2766854

                                                                           
Query: 386     gccacagacttctggtgctccagcttcgggcagtcagcaagacgatgcccaaggccacca 445
               ||||  |||||||||||||||||||| || ||||| | || |||||| ||||| ||||||
Sbjct: 2766855 gccatggacttctggtgctccagctttggacagtcggtaacacgatggccaagaccacca 2766914

                                                                           
Query: 446     cagaatgcacatcctttgacaccactctccttggcaatagcttcagcatcctccagcggg 505
               ||| |||||||||| || ||||| ||||||||||| || | |||  |||| ||||  |||
Sbjct: 2766915 cagtatgcacatcccttaacaccgctctccttggccatggtttcctcatcttccaatggg 2766974

                                                                           
Query: 506     tcaacgagctcagcaagcactggtggtattctttgcttcgcttccttgagcaggtgcttg 565
               |||  ||||||||| | |||||| |||||||||||||| |||||||| |||| |||||| 
Sbjct: 2766975 tcattgagctcagccaacactggcggtattctttgcttagcttccttaagcaagtgctta 2767034

                                                                           
Query: 566     aggtcaagaagcgttgtctctgtctggttcttgttgatgaacgtagttgctattcccgtt 625
               ||||||||||| || ||||| || || |||||||| ||||| || ||||||||||| |||
Sbjct: 2767035 aggtcaagaagggtagtctccgtttgattcttgtttatgaaggttgttgctattccagtt 2767094

                           
Query: 626     ttcccgcatcga 637
               ||||| ||||||
Sbjct: 2767095 ttcccacatcga 2767106
to top
>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0050G13
          Length = 150685

 Score =  262 bits (132), Expect = 1e-66
 Identities = 267/312 (85%)
 Strand = Plus / Plus

                                                                         
Query: 326   aatcatatttctccacggtaacctccaccgccatagtaatctcttctagagccggcaatc 385
             |||||||||||||| | ||| |||||||||||||||||||||||||||||||| || |||
Sbjct: 35023 aatcatatttctcctctgtagcctccaccgccatagtaatctcttctagagcccgcgatc 35082

                                                                         
Query: 386   gccacagacttctggtgctccagcttcgggcagtcagcaagacgatgcccaaggccacca 445
             ||||  |||||||||||||||||||| || ||||| | || |||||| ||||| ||||||
Sbjct: 35083 gccatggacttctggtgctccagctttggacagtcggtaacacgatggccaagaccacca 35142

                                                                         
Query: 446   cagaatgcacatcctttgacaccactctccttggcaatagcttcagcatcctccagcggg 505
             ||| |||||||||| || ||||| ||||||||||| || | |||  |||| ||||  |||
Sbjct: 35143 cagtatgcacatcccttaacaccgctctccttggccatggtttcctcatcttccaatggg 35202

                                                                         
Query: 506   tcaacgagctcagcaagcactggtggtattctttgcttcgcttccttgagcaggtgcttg 565
             |||  ||||||||| | |||||| |||||||||||||| |||||||| |||| |||||| 
Sbjct: 35203 tcattgagctcagccaacactggcggtattctttgcttagcttccttaagcaagtgctta 35262

                                                                         
Query: 566   aggtcaagaagcgttgtctctgtctggttcttgttgatgaacgtagttgctattcccgtt 625
             ||||||||||| || ||||| || || |||||||| ||||| || ||||||||||| |||
Sbjct: 35263 aggtcaagaagggtagtctccgtttgattcttgtttatgaaggttgttgctattccagtt 35322

                         
Query: 626   ttcccgcatcga 637
             ||||| ||||||
Sbjct: 35323 ttcccacatcga 35334
to top
>dbj|AK060595.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-F08, full
            insert sequence
          Length = 1694

 Score =  262 bits (132), Expect = 1e-66
 Identities = 267/312 (85%)
 Strand = Plus / Minus

                                                                        
Query: 326  aatcatatttctccacggtaacctccaccgccatagtaatctcttctagagccggcaatc 385
            |||||||||||||| | ||| |||||||||||||||||||||||||||||||| || |||
Sbjct: 1386 aatcatatttctcctctgtagcctccaccgccatagtaatctcttctagagcccgcgatc 1327

                                                                        
Query: 386  gccacagacttctggtgctccagcttcgggcagtcagcaagacgatgcccaaggccacca 445
            ||||  |||||||||||||||||||| || ||||| | || |||||| ||||| ||||||
Sbjct: 1326 gccatggacttctggtgctccagctttggacagtcggtaacacgatggccaagaccacca 1267

                                                                        
Query: 446  cagaatgcacatcctttgacaccactctccttggcaatagcttcagcatcctccagcggg 505
            ||| |||||||||| || ||||| ||||||||||| || | |||  |||| ||||  |||
Sbjct: 1266 cagtatgcacatcccttaacaccgctctccttggccatggtttcctcatcttccaatggg 1207

                                                                        
Query: 506  tcaacgagctcagcaagcactggtggtattctttgcttcgcttccttgagcaggtgcttg 565
            |||  ||||||||| | |||||| |||||||||||||| |||||||| |||| |||||| 
Sbjct: 1206 tcattgagctcagccaacactggcggtattctttgcttagcttccttaagcaagtgctta 1147

                                                                        
Query: 566  aggtcaagaagcgttgtctctgtctggttcttgttgatgaacgtagttgctattcccgtt 625
            ||||||||||| || ||||| || || |||||||| ||||| || ||||||||||| |||
Sbjct: 1146 aggtcaagaagggtagtctccgtttgattcttgtttatgaaggttgttgctattccagtt 1087

                        
Query: 626  ttcccgcatcga 637
            ||||| ||||||
Sbjct: 1086 ttcccacatcga 1075
to top
>gb|AY108346.1| Zea mays PCO139599 mRNA sequence
          Length = 1555

 Score =  167 bits (84), Expect = 6e-38
 Identities = 255/312 (81%)
 Strand = Plus / Minus

                                                                        
Query: 326  aatcatatttctccacggtaacctccaccgccatagtaatctcttctagagccggcaatc 385
            |||||||||||||| |||||||| || |||||| |||| ||| |||| ||||| ||||| 
Sbjct: 1119 aatcatatttctcctcggtaacccccgccgccaaagtagtcttttctcgagccagcaatt 1060

                                                                        
Query: 386  gccacagacttctggtgctccagcttcgggcagtcagcaagacgatgcccaaggccacca 445
            ||||  ||||| || ||||||| |||||| ||||||   | |||||| ||||| ||||||
Sbjct: 1059 gccatggacttttgatgctccaacttcggacagtcactgacacgatggccaagcccacca 1000

                                                                        
Query: 446  cagaatgcacatcctttgacaccactctccttggcaatagcttcagcatcctccagcggg 505
            ||  | ||||| ||||||||||||||||||||||||||   |||  |||| ||||  || 
Sbjct: 999  caatacgcacaacctttgacaccactctccttggcaattatttcctcatcatccaatgga 940

                                                                        
Query: 506  tcaacgagctcagcaagcactggtggtattctttgcttcgcttccttgagcaggtgcttg 565
            ||   |||||| || | ||| ||||| || || ||||| || ||||| ||||||||||||
Sbjct: 939  tcgttgagctccgccaacaccggtggaatcctctgctttgcctccttcagcaggtgcttg 880

                                                                        
Query: 566  aggtcaagaagcgttgtctctgtctggttcttgttgatgaacgtagttgctattcccgtt 625
            || || |||||||| ||||| || ||||||||||||||||| ||||||||||| || || 
Sbjct: 879  agatcgagaagcgtggtctcagtttggttcttgttgatgaaggtagttgctatgccagtc 820

                        
Query: 626  ttcccgcatcga 637
            ||||| ||||||
Sbjct: 819  ttcccacatcga 808
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                            
Query: 526      tggtggtattctttgcttcgcttccttgagcaggtgcttgaggtcaagaagcgttgtctc 585
                ||||||||  |||||||| | |||  ||||||  ||||| |||||||||||||| |||||
Sbjct: 28782731 tggtggtaacctttgctttgattcgatgagcaattgcttcaggtcaagaagcgtagtctc 28782672

                                              
Query: 586      tgtctggttcttgttgatgaacgtagttgc 615
                ||||||||||||||||||||| || |||||
Sbjct: 28782671 tgtctggttcttgttgatgaatgtcgttgc 28782642



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 427      acgatgcccaaggccaccacagaatgcacatcctttgacaccactct 473
                |||||| |||||||||||||| || ||||| || || ||||||||||
Sbjct: 28782833 acgatggccaaggccaccacaaaacgcacagcccttcacaccactct 28782787
to top
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0028E05
          Length = 157631

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                         
Query: 526   tggtggtattctttgcttcgcttccttgagcaggtgcttgaggtcaagaagcgttgtctc 585
             ||||||||  |||||||| | |||  ||||||  ||||| |||||||||||||| |||||
Sbjct: 90506 tggtggtaacctttgctttgattcgatgagcaattgcttcaggtcaagaagcgtagtctc 90447

                                           
Query: 586   tgtctggttcttgttgatgaacgtagttgc 615
             ||||||||||||||||||||| || |||||
Sbjct: 90446 tgtctggttcttgttgatgaatgtcgttgc 90417



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 427   acgatgcccaaggccaccacagaatgcacatcctttgacaccactct 473
             |||||| |||||||||||||| || ||||| || || ||||||||||
Sbjct: 90608 acgatggccaaggccaccacaaaacgcacagcccttcacaccactct 90562
to top
>ref|NM_119491.1| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/
            nucleic acid binding AT4G33370 mRNA, complete cds
          Length = 1629

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 590  tggttcttgttgatgaacgtagttgctattcccgttttccc 630
            ||||||||||| || |||||||||||||| || ||||||||
Sbjct: 1367 tggttcttgtttataaacgtagttgctatcccagttttccc 1327
to top
>emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 79
          Length = 199536

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 590   tggttcttgttgatgaacgtagttgctattcccgttttccc 630
             ||||||||||| || |||||||||||||| || ||||||||
Sbjct: 98020 tggttcttgtttataaacgtagttgctatcccagttttccc 98060
to top
>emb|AL035678.1|ATF17M5 Arabidopsis thaliana DNA chromosome 4, BAC clone F17M5 (ESSA project)
          Length = 96475

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 590   tggttcttgttgatgaacgtagttgctattcccgttttccc 630
             ||||||||||| || |||||||||||||| || ||||||||
Sbjct: 33241 tggttcttgtttataaacgtagttgctatcccagttttccc 33281
to top
>gb|AF067220.2| Caenorhabditis elegans cosmid C33E10, complete sequence
          Length = 42043

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 416   cagtcagcaagacgatgcccaag 438
             |||||||||||||||||||||||
Sbjct: 12792 cagtcagcaagacgatgcccaag 12814
to top
>ref|NM_078403.1| Caenorhabditis elegans C33E10.5 (C33E10.5) mRNA, complete cds
          Length = 1767

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 416  cagtcagcaagacgatgcccaag 438
            |||||||||||||||||||||||
Sbjct: 1629 cagtcagcaagacgatgcccaag 1651
to top
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 546     cttccttgagcaggtgcttga 566
               |||||||||||||||||||||
Sbjct: 4805644 cttccttgagcaggtgcttga 4805664
to top
>gb|AC087379.4| Homo sapiens chromosome 11, clone RP11-396O20, complete sequence
          Length = 167699

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 247   atatctcaagcatggatgagctgaa 271
             |||||||||||||| ||||||||||
Sbjct: 80857 atatctcaagcatgaatgagctgaa 80833
to top
>gb|AC012464.25| Homo sapiens 12 BAC RP11-1060G2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 173765

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 443    ccacagaatgcacatcctttg 463
              |||||||||||||||||||||
Sbjct: 153880 ccacagaatgcacatcctttg 153860
to top
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 546     cttccttgagcaggtgcttga 566
               |||||||||||||||||||||
Sbjct: 4138105 cttccttgagcaggtgcttga 4138125
to top
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 546     cttccttgagcaggtgcttga 566
               |||||||||||||||||||||
Sbjct: 4990538 cttccttgagcaggtgcttga 4990558
to top
>emb|AL845426.9| Mouse DNA sequence from clone RP23-289M11 on chromosome 2, complete
              sequence
          Length = 181434

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 49     tactagtgctcaagaaataat 69
              |||||||||||||||||||||
Sbjct: 129094 tactagtgctcaagaaataat 129114
to top
>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0030I14, complete sequence
          Length = 159035

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   tcttaagatatctcaagcat 259
             ||||||||||||||||||||
Sbjct: 56968 tcttaagatatctcaagcat 56987
to top
>gb|AY324310.1| Anopheles gambiae insulin-like peptide 4 precursor gene, complete
           cds
          Length = 599

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 309 taataatatgatgatgtaat 328
           ||||||||||||||||||||
Sbjct: 252 taataatatgatgatgtaat 233
to top
>gb|AE009173.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 199
            of 256 of the complete sequence
          Length = 11055

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 558  ggtgcttgaggtcaagaagc 577
            ||||||||||||||||||||
Sbjct: 9881 ggtgcttgaggtcaagaagc 9862
to top
>emb|CR753817.13| Zebrafish DNA sequence from clone DKEY-195M11 in linkage group 6,
             complete sequence
          Length = 236737

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   taataatatgatgatgtaat 328
             ||||||||||||||||||||
Sbjct: 11633 taataatatgatgatgtaat 11614
to top
>gb|AC010797.4|ATAC010797 Arabidopsis thaliana chromosome III BAC F28J7 genomic sequence,
             complete sequence
          Length = 89154

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   agaaatatattacatcaagt 154
             ||||||||||||||||||||
Sbjct: 36739 agaaatatattacatcaagt 36720
to top
>gb|AC104906.6| Mus musculus chromosome 10, clone RP24-374K6, complete sequence
          Length = 179312

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   atgatgatgtaatcatattt 335
             ||||||||||||||||||||
Sbjct: 22056 atgatgatgtaatcatattt 22037
to top
>emb|AL136987.11| Human DNA sequence from clone RP5-1011O1 on chromosome 1 Contains the
             RGS1 gene for regulator of G-protein signalling 1,
             complete sequence
          Length = 122562

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    atactagtgctcaagaaata 67
             ||||||||||||||||||||
Sbjct: 43913 atactagtgctcaagaaata 43894
to top
>gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152737

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 442    accacagaatgcacatcctt 461
              ||||||||||||||||||||
Sbjct: 117946 accacagaatgcacatcctt 117965
to top
>emb|AL132775.29|HSDJ46C2 Human DNA sequence from clone RP1-46C2 on chromosome 6p22.2-23 Contains
             the 5' end of the E2F3 gene for E2F transcription factor 3
             (E2F-3, KIAA0075) and two CpG islands, complete sequence
          Length = 109902

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 451   tgcacatcctttgacaccac 470
             ||||||||||||||||||||
Sbjct: 32126 tgcacatcctttgacaccac 32145
to top
>emb|AL606631.2|OSJN00069 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050O03,
             complete sequence
          Length = 140948

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 531   gtattctttgcttcgcttccttga 554
             |||||||||||||||| |||||||
Sbjct: 17815 gtattctttgcttcgcctccttga 17838
to top
>gb|AC114786.4| Homo sapiens BAC clone RP11-618I10 from 4, complete sequence
          Length = 148977

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   ataatgtgatgacaaatctt 190
             ||||||||||||||||||||
Sbjct: 57349 ataatgtgatgacaaatctt 57330
to top
>emb|BX323816.6| Zebrafish DNA sequence from clone DKEY-38N6, complete sequence
          Length = 190532

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    taataatatgatgatgtaat 328
              ||||||||||||||||||||
Sbjct: 154131 taataatatgatgatgtaat 154150
to top
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 558     ggtgcttgaggtcaagaagc 577
               ||||||||||||||||||||
Sbjct: 2212459 ggtgcttgaggtcaagaagc 2212440
to top
>gb|AC093795.3| Homo sapiens BAC clone RP11-299P3 from 4, complete sequence
          Length = 183917

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 442   accacagaatgcacatcctt 461
             ||||||||||||||||||||
Sbjct: 12002 accacagaatgcacatcctt 11983
to top
>gb|AC093864.3| Homo sapiens BAC clone RP11-557J10 from 4, complete sequence
          Length = 128335

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   atgatgatgtaatcatattt 335
             ||||||||||||||||||||
Sbjct: 61615 atgatgatgtaatcatattt 61634
to top
>gb|AC069494.8| Homo sapiens chromosome 18, clone RP11-743K16, complete sequence
          Length = 179544

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    ggagaaatatattacatcaa 152
              ||||||||||||||||||||
Sbjct: 136127 ggagaaatatattacatcaa 136108
to top
>gb|AC009660.15| Homo sapiens chromosome 15, clone RP11-424J10, complete sequence
          Length = 214166

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 536   ctttgcttcgcttccttgagcagg 559
             ||||||||| ||||||||||||||
Sbjct: 53505 ctttgcttctcttccttgagcagg 53528
to top
>gb|AC157950.2| Mus musculus BAC clone RP23-128A23 from chromosome 9, complete sequence
          Length = 202301

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 582    tctctgtctggttcttgttgatga 605
              ||||||||||||| ||||||||||
Sbjct: 170926 tctctgtctggtttttgttgatga 170949
to top
>gb|AC157996.2| Mus musculus BAC clone RP24-194J17 from chromosome 9, complete sequence
          Length = 158268

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 582   tctctgtctggttcttgttgatga 605
             ||||||||||||| ||||||||||
Sbjct: 10405 tctctgtctggtttttgttgatga 10428
to top
>gb|AC159468.4| Mus musculus 10 BAC RP23-335A3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 214532

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 316    atgatgatgtaatcatattt 335
              ||||||||||||||||||||
Sbjct: 177869 atgatgatgtaatcatattt 177850
to top
>emb|BX322550.7| Zebrafish DNA sequence from clone DKEY-202N14 in linkage group 5,
              complete sequence
          Length = 184426

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 319    atgatgtaatcatatttctc 338
              ||||||||||||||||||||
Sbjct: 136256 atgatgtaatcatatttctc 136237
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 531    gtattctttgcttcgcttccttga 554
              |||||||||||||||| |||||||
Sbjct: 938096 gtattctttgcttcgcctccttga 938119
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 240      tcttaagatatctcaagcat 259
                ||||||||||||||||||||
Sbjct: 29408943 tcttaagatatctcaagcat 29408962
to top
>gb|AC157525.2| Pan troglodytes BAC clone CH251-519D18 from chromosome unknown, complete
              sequence
          Length = 234137

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    ggagaaatatattacatcaa 152
              ||||||||||||||||||||
Sbjct: 226588 ggagaaatatattacatcaa 226607
to top
>gb|AC010982.5| Homo sapiens BAC clone RP11-475I16 from 2, complete sequence
          Length = 217107

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 255   agcatggatgagctgaagctgcag 278
             ||||||| ||||||||||||||||
Sbjct: 49797 agcatggttgagctgaagctgcag 49820
to top
>gb|AC109327.10| Homo sapiens chromosome 17, clone RP11-93C20, complete sequence
          Length = 113000

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 399    ggtgctccagcttcgggcagtcag 422
              |||||||||||||| |||||||||
Sbjct: 106937 ggtgctccagcttcaggcagtcag 106914
to top
>gb|AC120024.22| Homo sapiens chromosome 17, clone CTD-2526A2, complete sequence
          Length = 136002

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 399   ggtgctccagcttcgggcagtcag 422
             |||||||||||||| |||||||||
Sbjct: 37349 ggtgctccagcttcaggcagtcag 37326
to top
>dbj|AK180936.1| Mus musculus cDNA, clone:Y0G0116G06, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000021956, based on BLAT search
          Length = 269

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 413 gggcagtcagcaagacgatgcccaaggccaccacagaatgcaca 456
           ||||||||||| |  ||||| |||||||| |||||||| |||||
Sbjct: 224 gggcagtcagcgatccgatggccaaggcctccacagaaggcaca 181
to top
>gb|AY365588.1| HIV-1 isolate 98897 from Argentina pol protein (pol) gene, partial
           cds
          Length = 1497

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 313 aatatgatgatgtaatcata 332
           ||||||||||||||||||||
Sbjct: 173 aatatgatgatgtaatcata 192
to top
>emb|AL805951.6| Mouse DNA sequence from clone RP23-326P3 on chromosome 4, complete
             sequence
          Length = 197080

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    atgatatactagtgctcaag 62
             ||||||||||||||||||||
Sbjct: 97036 atgatatactagtgctcaag 97017


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,778,433
Number of Sequences: 3902068
Number of extensions: 5778433
Number of successful extensions: 105777
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105426
Number of HSP's gapped (non-prelim): 351
length of query: 637
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 614
effective length of database: 17,143,297,704
effective search space: 10525984790256
effective search space used: 10525984790256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top