Clone Information

BLAST Search Result

Clone Name	rbags31j08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY532594.1\| Triticum aestivum minichromosomal maintenance fac...	577	e-161
2	gb\|AY532593.1\| Triticum aestivum minichromosomal maintenance fac...	280	6e-72
3	dbj\|AK121422.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	270	5e-69
4	gb\|AY109731.1\| Zea mays CL9169_1 mRNA sequence	236	7e-59
5	gb\|AC131343.4\| Oryza sativa (japonica cultivar-group) chromosome...	161	4e-36
6	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	161	4e-36
7	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	161	4e-36
8	ref\|NM_103572.2\| Arabidopsis thaliana ATP binding / DNA binding ...	64	6e-07
9	gb\|AC020576.2\|T12C22 Sequence of BAC T12C22 from Arabidopsis tha...	64	6e-07
10	emb\|Y08301.1\|ATMCM2R A.thaliana mRNA for MCM2-related protein	64	6e-07
11	emb\|Y19170.1\|DJA19170 Dugesia japonica mRNA for MCM2 protein	44	0.57
12	gb\|AC102105.8\| Mus musculus chromosome 12, clone RP23-89G24, com...	42	2.2
13	gb\|AC120035.6\| Homo sapiens chromosome 8, clone RP11-1116K10, co...	42	2.2
14	dbj\|AB227535.1\| Aspergillus oryzae cDNA, contig sequence: AoEST4406	42	2.2
15	dbj\|AP007161.1\| Aspergillus oryzae RIB40 genomic DNA, SC012	42	2.2
16	gb\|AC069426.9\| Homo sapiens 3 BAC RP11-200O17 (Roswell Park Canc...	42	2.2
17	gb\|AC090059.9\| Homo sapiens 12 BAC RP11-604C20 (Roswell Park Can...	42	2.2
18	gb\|AC110288.10\| Homo sapiens chromosome 8, clone CTD-2281E23, co...	42	2.2
19	gb\|AC137849.11\| Mus musculus chromosome 1, clone RP24-124J24, co...	40	8.9
20	gb\|CY003699.1\| Influenza A virus (A/New York/489/2003(H1N2)) seg...	40	8.9
21	gb\|CY003427.1\| Influenza A virus (A/New York/407/2002(H3N2)) seg...	40	8.9
22	gb\|AC100531.15\| Mus musculus chromosome 1, clone RP23-147I4, com...	40	8.9
23	gb\|AC142351.1\| Pan troglodytes BAC clone RP43-21J15 from 7, comp...	40	8.9
24	gb\|CY001683.1\| Influenza A virus (A/New York/78/2002(H1N2)) segm...	40	8.9
25	emb\|AL606467.5\| Human DNA sequence from clone RP13-172P16 on chr...	40	8.9
26	emb\|AL365203.19\| Human DNA sequence from clone RP11-479G22 on ch...	40	8.9
27	emb\|AL360006.15\| Human DNA sequence from clone RP11-528D17 on ch...	40	8.9
28	gb\|CY010719.1\| Influenza A virus (A/New York/631/1996(H3N2)) seg...	40	8.9
29	gb\|AC103949.6\| Homo sapiens chromosome 18, clone RP11-671P2, com...	40	8.9
30	gb\|AC026839.7\| Homo sapiens chromosome 5, clone RP11-186B13, com...	40	8.9
31	gb\|CY001739.1\| Influenza A virus (A/New York/276/2002(H3N2)) seg...	40	8.9
32	gb\|AE016818.1\| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	40	8.9
33	gb\|AC160394.2\| Mus musculus BAC clone RP23-116C19 from chromosom...	40	8.9
34	ref\|NM_065375.2\| Caenorhabditis elegans CYtochrome P450 family m...	40	8.9
35	emb\|BX934130.2\| Gallus gallus finished cDNA, clone ChEST267k10	40	8.9
36	gb\|AC108022.3\| Homo sapiens BAC clone RP11-9D8 from 4, complete ...	40	8.9
37	dbj\|AP000040.1\| Homo sapiens genomic DNA, chromosome 21q22.1, se...	40	8.9
38	gb\|AC125435.8\| Homo sapiens chromosome 15, clone CTD-2235H24, co...	40	8.9
39	gb\|CY000548.1\| Influenza A virus (A/New York/115/2002(H3N2)) seg...	40	8.9
40	gb\|CY000340.1\| Influenza A virus (A/New York/135/2002(H3N2)) seg...	40	8.9
41	emb\|AL954212.1\| Pan troglodytes chromosome 22 clone RP43-043L10 ...	40	8.9
42	emb\|BX571671.3\| Zebrafish DNA sequence from clone DKEY-153O22 in...	40	8.9
43	emb\|CT485603.4\| RP43-005L22, complete sequence	40	8.9
44	ref\|NM_209992.1\| Eremothecium gossypii AEL222Cp (AEL222C), mRNA	40	8.9
45	emb\|Z66495.2\|CEC36A4 Caenorhabditis elegans Cosmid C36A4, comple...	40	8.9
46	emb\|BX322618.8\| Zebrafish DNA sequence from clone CH211-265G21 i...	40	8.9
47	dbj\|AP001715.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	8.9
48	gb\|AE016958.1\| Mycobacterium avium subsp. paratuberculosis str. ...	40	8.9
49	gb\|CY003772.1\| Influenza A virus (A/New York/417/2002(H1N2)) seg...	40	8.9
50	gb\|AC122220.4\| Mus musculus BAC clone RP23-122B15 from 9, comple...	40	8.9
51	gb\|CY006398.1\| Influenza A virus (A/New York/487/2003(H1N2)) seg...	40	8.9
52	gb\|CY006390.1\| Influenza A virus (A/New York/481/2003(H1N2)) seg...	40	8.9
53	gb\|AC015720.20\| Homo sapiens chromosome 15, clone RP11-151H2, co...	40	8.9
54	dbj\|AB056778.1\| Macaca fascicularis brain cDNA clone:QccE-21094,...	40	8.9
55	dbj\|AP000281.1\| Homo sapiens genomic DNA, chromosome 21q22.1, D2...	40	8.9
56	dbj\|AP000184.1\| Homo sapiens genomic DNA, chromosome 21q22.1, D2...	40	8.9
57	dbj\|AP000108.1\| Homo sapiens genomic DNA of 21q22.1, GART and AM...	40	8.9

>gb|AY532594.1| Triticum aestivum minichromosomal maintenance factor (MCM2) mRNA,
            complete cds
          Length = 2923

 Score =  577 bits (291), Expect = e-161
 Identities = 339/355 (95%)
 Strand = Plus / Minus

                                                                        
Query: 294  gaggttgattgagttgttatgctgctactggatgcttgatgatcccacgcccttcatcca 353
            ||||| |||||||||||||||| || ||||||||| |||||||||||||||||||||| |
Sbjct: 2923 gaggtcgattgagttgttatgccgcaactggatgcctgatgatcccacgcccttcatcga 2864

                                                                        
Query: 354  ggacaaagctgttgtcgttgaagtgagagctggagaagaagggcctcagatcgtagatct 413
            ||||||||||||||||  |||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 2863 ggacaaagctgttgtcactgaagtgagagctggagaagaacggcctcaggtcgtagatct 2804

                                                                        
Query: 414  catattcttgggccttgttcttcaggtcatccactttaacctcgacatgagtcaggcgtg 473
            ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 2803 catattcttgggccttgttcttcaggtcatccactttaacctcaacgtgagtcaggcgtg 2744

                                                                        
Query: 474  tggttgatcccgacacaatctcttcaaagtgcagcgcttccttgaccagggtgcgcagaa 533
            |||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2743 tggttgatccagacacgatttcttcaaagtgcagcgcctccttgaccagggtgcgcagaa 2684

                                                                        
Query: 534  ggagcagaagcagttcattgtaatccttcttgtacgtcatgtatttccggaaattcttct 593
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2683 ggagcagaagcagttcattgtaatccttcttgtacgtcatgtacttccggaaattcttct 2624

                                                                   
Query: 594  gaagtgctttctggacaccaaatttctgggttgagatgaacgagtcaagcagcac 648
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2623 gaagtgctttctggacaccaaatttctgggttgagatgaacgagtcaagcagcac 2569

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>gb|AY532593.1| Triticum aestivum minichromosomal maintenance factor (MCM2) gene,
            exons 1 through 18 and complete sequence
          Length = 8809

 Score =  280 bits (141), Expect = 6e-72
 Identities = 159/165 (96%)
 Strand = Plus / Minus

                                                                        
Query: 426  ccttgttcttcaggtcatccactttaacctcgacatgagtcaggcgtgtggttgatcccg 485
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 7796 ccttgttcttcaggtcatccactttaacctcgacatgagtcaggcgtgcggttgatccca 7737

                                                                        
Query: 486  acacaatctcttcaaagtgcagcgcttccttgaccagggtgcgcagaaggagcagaagca 545
            |||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 7736 acacgatttcttcaaagtgcagcgcctccttgaccagggtgcgcagaaggagcagaagca 7677

                                                         
Query: 546  gttcattgtaatccttcttgtacgtcatgtatttccggaaattct 590
            |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7676 gttcattgtaatccttcttgtaagtcatgtatttccggaaattct 7632



 Score =  202 bits (102), Expect = 1e-48
 Identities = 160/178 (89%), Gaps = 1/178 (0%)
 Strand = Plus / Minus

                                                                        
Query: 85   gatggcgtcaggtgcatataacactgaattatgacaataagaaggtacaaacatctctaa 144
            ||||||||||| | |||| ||||||||||||||| |  ||||||||||| ||||||| ||
Sbjct: 8259 gatggcgtcagttccata-aacactgaattatgatatcaagaaggtacagacatctcgaa 8201

                                                                        
Query: 145  atgccactggaggcacaagggtttcagatagcaaacagtacaccaacaccagaattcccg 204
            ||||| ||| |||||||||||||||||||||||||||||||||||| | ||||| || | 
Sbjct: 8200 atgccgctgtaggcacaagggtttcagatagcaaacagtacaccaatatcagaactctca 8141

                                                                      
Query: 205  taaaacagacacgagcagtcattttgccaacttacactacaagtggacatttctagct 262
             ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 8140 caaaacagacacaagcagtcattttgccgacttacactacaagtggacatttctagct 8083



 Score =  194 bits (98), Expect = 3e-46
 Identities = 128/138 (92%)
 Strand = Plus / Minus

                                                                        
Query: 291  gctgaggttgattgagttgttatgctgctactggatgcttgatgatcccacgcccttcat 350
            ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
Sbjct: 8041 gctgatgttgattgagttgttatgctgcaactggatgcctgatgatcccacgcccttcgt 7982

                                                                        
Query: 351  ccaggacaaagctgttgtcgttgaagtgagagctggagaagaagggcctcagatcgtaga 410
            ||||||| |||||||||||| |||||||||||||||||||||| |||||||| |||||||
Sbjct: 7981 ccaggacgaagctgttgtcgctgaagtgagagctggagaagaacggcctcaggtcgtaga 7922

                              
Query: 411  tctcatattcttgggcct 428
            |||| || ||||||||||
Sbjct: 7921 tctcgtactcttgggcct 7904



 Score =  103 bits (52), Expect = 7e-19
 Identities = 58/60 (96%)
 Strand = Plus / Minus

                                                                        
Query: 589  cttctgaagtgctttctggacaccaaatttctgggttgagatgaacgagtcaagcagcac 648
            |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 7405 cttctgaagtgccttctggacaccaaatttctgggttgagatgaatgagtcaagcagcac 7346



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 272  gctcttgaacaaagaggtagctg 294
            |||||||||||||||||||||||
Sbjct: 8085 gctcttgaacaaagaggtagctg 8063

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>dbj|AK121422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N01, full
            insert sequence
          Length = 3214

 Score =  270 bits (136), Expect = 5e-69
 Identities = 271/316 (85%)
 Strand = Plus / Minus

                                                                        
Query: 330  tgatgatcccacgcccttcatccaggacaaagctgttgtcgttgaagtgagagctggaga 389
            |||||||||| |||||||| || ||||| ||| |||||||  ||||||| | ||||||||
Sbjct: 2949 tgatgatcccccgcccttcgtcgaggacgaagttgttgtccctgaagtgggcgctggaga 2890

                                                                        
Query: 390  agaagggcctcagatcgtagatctcatattcttgggccttgttcttcaggtcatccactt 449
            |||| || ||||| || ||||| || || || |||||||||||||||||||| || ||||
Sbjct: 2889 agaacggtctcaggtcatagatttcgtactcctgggccttgttcttcaggtcctctactt 2830

                                                                        
Query: 450  taacctcgacatgagtcaggcgtgtggttgatcccgacacaatctcttcaaagtgcagcg 509
            |||||||||  ||||||||||| || |||| ||| || || || ||||| ||||||||| 
Sbjct: 2829 taacctcgatgtgagtcaggcgcgtcgttggtcctgaaacgatttcttcgaagtgcagca 2770

                                                                        
Query: 510  cttccttgaccagggtgcgcagaaggagcagaagcagttcattgtaatccttcttgtacg 569
            | ||||||||||||||||||||||| ||||  ||||| ||||||||||||||||| || |
Sbjct: 2769 catccttgaccagggtgcgcagaagaagcaagagcagctcattgtaatccttcttatagg 2710

                                                                        
Query: 570  tcatgtatttccggaaattcttctgaagtgctttctggacaccaaatttctgggttgaga 629
            |||||||||||| ||||||||| |||||||||||||| |||||||| ||||| ||||| |
Sbjct: 2709 tcatgtatttcctgaaattcttttgaagtgctttctgtacaccaaacttctgagttgaaa 2650

                            
Query: 630  tgaacgagtcaagcag 645
            | || |||||||||||
Sbjct: 2649 taaatgagtcaagcag 2634

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>gb|AY109731.1| Zea mays CL9169_1 mRNA sequence
          Length = 623

 Score =  236 bits (119), Expect = 7e-59
 Identities = 272/323 (84%)
 Strand = Plus / Plus

                                                                       
Query: 322 tggatgcttgatgatcccacgcccttcatccaggacaaagctgttgtcgttgaagtgaga 381
           ||||||| ||||||||||||||||||||||||| |  |||| ||||||  |||||   | 
Sbjct: 178 tggatgcctgatgatcccacgcccttcatccagaaggaagccgttgtccctgaagcacgc 237

                                                                       
Query: 382 gctggagaagaagggcctcagatcgtagatctcatattcttgggccttgttcttcaggtc 441
           |||||||||||| ||| |||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 238 gctggagaagaacggcttcagatcgtagatctcgtattcttgggccttgttcctcaggtc 297

                                                                       
Query: 442 atccactttaacctcgacatgagtcaggcgtgtggttgatcccgacacaatctcttcaaa 501
            |||| ||| |||||||| ||||| || |||| || |||||| | ||  || ||||| ||
Sbjct: 298 ctccaatttgacctcgacgtgagtaagacgtgaggctgatcctgccatgatttcttcgaa 357

                                                                       
Query: 502 gtgcagcgcttccttgaccagggtgcgcagaaggagcagaagcagttcattgtaatcctt 561
           |||||  || ||||||||||| |||||||| || ||||| ||||| || ||||| |||||
Sbjct: 358 gtgcacggcgtccttgaccagtgtgcgcaggagcagcaggagcagctcgttgtagtcctt 417

                                                                       
Query: 562 cttgtacgtcatgtatttccggaaattcttctgaagtgctttctggacaccaaatttctg 621
           |||| | |||||||| || ||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 418 cttgaatgtcatgtactttcggaaattcttttgaagtgctttctgcacaccgaatttctg 477

                                  
Query: 622 ggttgagatgaacgagtcaagca 644
            || || || || ||||||||||
Sbjct: 478 agtcgaaataaaagagtcaagca 500

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>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057E15,
              complete sequence
          Length = 149035

 Score =  161 bits (81), Expect = 4e-36
 Identities = 144/165 (87%)
 Strand = Plus / Minus

                                                                          
Query: 426    ccttgttcttcaggtcatccactttaacctcgacatgagtcaggcgtgtggttgatcccg 485
              |||||||||||||||| || |||||||||||||  ||||||||||| || |||| ||| |
Sbjct: 102584 ccttgttcttcaggtcctctactttaacctcgatgtgagtcaggcgcgtcgttggtcctg 102525

                                                                          
Query: 486    acacaatctcttcaaagtgcagcgcttccttgaccagggtgcgcagaaggagcagaagca 545
              | || || ||||| ||||||||| | ||||||||||||||||||||||| ||||  ||||
Sbjct: 102524 aaacgatttcttcgaagtgcagcacatccttgaccagggtgcgcagaagaagcaagagca 102465

                                                           
Query: 546    gttcattgtaatccttcttgtacgtcatgtatttccggaaattct 590
              | ||||||||||||||||| || ||||||||||||| ||||||||
Sbjct: 102464 gctcattgtaatccttcttataggtcatgtatttcctgaaattct 102420



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 82/99 (82%)
 Strand = Plus / Minus

                                                                          
Query: 330    tgatgatcccacgcccttcatccaggacaaagctgttgtcgttgaagtgagagctggaga 389
              |||||||||| |||||||| || ||||| ||| |||||||  ||||||| | ||||||||
Sbjct: 102793 tgatgatcccccgcccttcgtcgaggacgaagttgttgtccctgaagtgggcgctggaga 102734

                                                     
Query: 390    agaagggcctcagatcgtagatctcatattcttgggcct 428
              |||| || ||||| || ||||| || || || |||||||
Sbjct: 102733 agaacggtctcaggtcatagatttcgtactcctgggcct 102695



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                   
Query: 593    tgaagtgctttctggacaccaaatttctgggttgagatgaacgagtcaagcag 645
              |||||||||||||| |||||||| ||||| ||||| || || |||||||||||
Sbjct: 102168 tgaagtgctttctgtacaccaaacttctgagttgaaataaatgagtcaagcag 102116

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  161 bits (81), Expect = 4e-36
 Identities = 144/165 (87%)
 Strand = Plus / Minus

                                                                            
Query: 426      ccttgttcttcaggtcatccactttaacctcgacatgagtcaggcgtgtggttgatcccg 485
                |||||||||||||||| || |||||||||||||  ||||||||||| || |||| ||| |
Sbjct: 16461985 ccttgttcttcaggtcctctactttaacctcgatgtgagtcaggcgcgtcgttggtcctg 16461926

                                                                            
Query: 486      acacaatctcttcaaagtgcagcgcttccttgaccagggtgcgcagaaggagcagaagca 545
                | || || ||||| ||||||||| | ||||||||||||||||||||||| ||||  ||||
Sbjct: 16461925 aaacgatttcttcgaagtgcagcacatccttgaccagggtgcgcagaagaagcaagagca 16461866

                                                             
Query: 546      gttcattgtaatccttcttgtacgtcatgtatttccggaaattct 590
                | ||||||||||||||||| || ||||||||||||| ||||||||
Sbjct: 16461865 gctcattgtaatccttcttataggtcatgtatttcctgaaattct 16461821



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 82/99 (82%)
 Strand = Plus / Minus

                                                                            
Query: 330      tgatgatcccacgcccttcatccaggacaaagctgttgtcgttgaagtgagagctggaga 389
                |||||||||| |||||||| || ||||| ||| |||||||  ||||||| | ||||||||
Sbjct: 16462194 tgatgatcccccgcccttcgtcgaggacgaagttgttgtccctgaagtgggcgctggaga 16462135

                                                       
Query: 390      agaagggcctcagatcgtagatctcatattcttgggcct 428
                |||| || ||||| || ||||| || || || |||||||
Sbjct: 16462134 agaacggtctcaggtcatagatttcgtactcctgggcct 16462096



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 593      tgaagtgctttctggacaccaaatttctgggttgagatgaacgagtcaagcag 645
                |||||||||||||| |||||||| ||||| ||||| || || |||||||||||
Sbjct: 16461569 tgaagtgctttctgtacaccaaacttctgagttgaaataaatgagtcaagcag 16461517

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  161 bits (81), Expect = 4e-36
 Identities = 144/165 (87%)
 Strand = Plus / Minus

                                                                            
Query: 426      ccttgttcttcaggtcatccactttaacctcgacatgagtcaggcgtgtggttgatcccg 485
                |||||||||||||||| || |||||||||||||  ||||||||||| || |||| ||| |
Sbjct: 16552989 ccttgttcttcaggtcctctactttaacctcgatgtgagtcaggcgcgtcgttggtcctg 16552930

                                                                            
Query: 486      acacaatctcttcaaagtgcagcgcttccttgaccagggtgcgcagaaggagcagaagca 545
                | || || ||||| ||||||||| | ||||||||||||||||||||||| ||||  ||||
Sbjct: 16552929 aaacgatttcttcgaagtgcagcacatccttgaccagggtgcgcagaagaagcaagagca 16552870

                                                             
Query: 546      gttcattgtaatccttcttgtacgtcatgtatttccggaaattct 590
                | ||||||||||||||||| || ||||||||||||| ||||||||
Sbjct: 16552869 gctcattgtaatccttcttataggtcatgtatttcctgaaattct 16552825



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 82/99 (82%)
 Strand = Plus / Minus

                                                                            
Query: 330      tgatgatcccacgcccttcatccaggacaaagctgttgtcgttgaagtgagagctggaga 389
                |||||||||| |||||||| || ||||| ||| |||||||  ||||||| | ||||||||
Sbjct: 16553198 tgatgatcccccgcccttcgtcgaggacgaagttgttgtccctgaagtgggcgctggaga 16553139

                                                       
Query: 390      agaagggcctcagatcgtagatctcatattcttgggcct 428
                |||| || ||||| || ||||| || || || |||||||
Sbjct: 16553138 agaacggtctcaggtcatagatttcgtactcctgggcct 16553100



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 593      tgaagtgctttctggacaccaaatttctgggttgagatgaacgagtcaagcag 645
                |||||||||||||| |||||||| ||||| ||||| || || |||||||||||
Sbjct: 16552573 tgaagtgctttctgtacaccaaacttctgagttgaaataaatgagtcaagcag 16552521

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>ref|NM_103572.2| Arabidopsis thaliana ATP binding / DNA binding / DNA-dependent ATPase
            AT1G44900 mRNA, complete cds
          Length = 2950

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 603  tctggacaccaaatttctgggttgagatgaacgagtcaag 642
            ||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 2515 tctggacaccaaatttctgggttgatatgaaagagtcaag 2476

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>gb|AC020576.2|T12C22 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 115421

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                     
Query: 603   tctggacaccaaatttctgggttgagatgaacgagtcaag 642
             ||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 86680 tctggacaccaaatttctgggttgatatgaaagagtcaag 86641

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>emb|Y08301.1|ATMCM2R A.thaliana mRNA for MCM2-related protein
          Length = 1581

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 603  tctggacaccaaatttctgggttgagatgaacgagtcaag 642
            ||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1175 tctggacaccaaatttctgggttgatatgaaagagtcaag 1136

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>emb|Y19170.1|DJA19170 Dugesia japonica mRNA for MCM2 protein
          Length = 2796

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 615  atttctgggttgagatgaacgagtcaagcagcac 648
            |||||| ||||||||||||||| || ||||||||
Sbjct: 2392 atttctcggttgagatgaacgactcgagcagcac 2359

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>gb|AC102105.8| Mus musculus chromosome 12, clone RP23-89G24, complete sequence
          Length = 188853

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 282    aaagaggtagctgaggttgat 302
              |||||||||||||||||||||
Sbjct: 103298 aaagaggtagctgaggttgat 103318

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>gb|AC120035.6| Homo sapiens chromosome 8, clone RP11-1116K10, complete sequence
          Length = 151045

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 593    tgaagtgctttctggacacca 613
              |||||||||||||||||||||
Sbjct: 132716 tgaagtgctttctggacacca 132736

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>dbj|AB227535.1| Aspergillus oryzae cDNA, contig sequence: AoEST4406
          Length = 952

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 511 ttccttgaccagggtgcgcagaagg 535
           |||||||||||||| ||||||||||
Sbjct: 217 ttccttgaccagggcgcgcagaagg 193

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>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012
          Length = 2668010

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 511     ttccttgaccagggtgcgcagaagg 535
               |||||||||||||| ||||||||||
Sbjct: 2264179 ttccttgaccagggcgcgcagaagg 2264203

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>gb|AC069426.9| Homo sapiens 3 BAC RP11-200O17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 128500

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 428   ttgttcttcaggtcatccactttaacctc 456
             ||||||||||||||| |||||| ||||||
Sbjct: 50709 ttgttcttcaggtcacccacttgaacctc 50737

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>gb|AC090059.9| Homo sapiens 12 BAC RP11-604C20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 130125

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 34    cataatgattgtcccaaaagt 54
             |||||||||||||||||||||
Sbjct: 45586 cataatgattgtcccaaaagt 45606

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>gb|AC110288.10| Homo sapiens chromosome 8, clone CTD-2281E23, complete sequence
          Length = 102752

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 593   tgaagtgctttctggacacca 613
             |||||||||||||||||||||
Sbjct: 11107 tgaagtgctttctggacacca 11127

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>gb|AC137849.11| Mus musculus chromosome 1, clone RP24-124J24, complete sequence
          Length = 178764

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 345   cttcatccaggacaaagctg 364
             ||||||||||||||||||||
Sbjct: 21112 cttcatccaggacaaagctg 21093

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>gb|CY003699.1| Influenza A virus (A/New York/489/2003(H1N2)) segment 5, complete
           sequence
          Length = 1530

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 agatcgtagatctcatattcttgg 424
           |||||| |||||||||||||||||
Sbjct: 777 agatcgaagatctcatattcttgg 800

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>gb|CY003427.1| Influenza A virus (A/New York/407/2002(H3N2)) segment 5, complete
           sequence
          Length = 1566

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 agatcgtagatctcatattcttgg 424
           |||||| |||||||||||||||||
Sbjct: 800 agatcgaagatctcatattcttgg 823

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>gb|AC100531.15| Mus musculus chromosome 1, clone RP23-147I4, complete sequence
          Length = 202351

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   cttcatccaggacaaagctg 364
             ||||||||||||||||||||
Sbjct: 33699 cttcatccaggacaaagctg 33718

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>gb|AC142351.1| Pan troglodytes BAC clone RP43-21J15 from 7, complete sequence
          Length = 159635

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    aaacatctctaaatgccact 152
              ||||||||||||||||||||
Sbjct: 104407 aaacatctctaaatgccact 104388

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>gb|CY001683.1| Influenza A virus (A/New York/78/2002(H1N2)) segment 5, complete
           sequence
          Length = 1566

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 agatcgtagatctcatattcttgg 424
           |||||| |||||||||||||||||
Sbjct: 800 agatcgaagatctcatattcttgg 823

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>emb|AL606467.5| Human DNA sequence from clone RP13-172P16 on chromosome Xp21.1-21.3
             Contains a High mobility group protein 1
             (HMG-1)(LOC340573) pseudogene, a novel gene and the 5'end
             of a novel gene (LOC158730), complete sequence
          Length = 138093

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 584   aaattcttctgaagtgcttt 603
             ||||||||||||||||||||
Sbjct: 41320 aaattcttctgaagtgcttt 41339

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>emb|AL365203.19| Human DNA sequence from clone RP11-479G22 on chromosome 10 Contains the
             3' end of a novel gene (FLJ13031) (FLJ40349), the ITGB1
             gene for integrin beta 1 (fibronectin receptor beta
             polypeptide antigen CD29 includes MDF2 MSK12), an
             adenylate kinase 3 like 1 (AK3L1) pseudogene, a novel
             gene, the 5' end of a novel gene, a NADH dehydrogenase
             subunit 4L (ND4L) pseudogene, a pseudogene similar to part
             of integrin beta 2 (antigen CD18 (p95) lymphocyte
             function-associated antigen 1; macrophage antigen 1
             (mac-1) beta subunit) (ITGB2) and a CpG island, complete
             sequence
          Length = 197973

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   ggaggcacaagggtttcaga 172
             ||||||||||||||||||||
Sbjct: 92711 ggaggcacaagggtttcaga 92692

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>emb|AL360006.15| Human DNA sequence from clone RP11-528D17 on chromosome 1, complete
             sequence
          Length = 113420

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   attatgacaataagaaggta 131
             ||||||||||||||||||||
Sbjct: 27798 attatgacaataagaaggta 27817

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>gb|CY010719.1| Influenza A virus (A/New York/631/1996(H3N2)) segment 5, complete
           sequence
          Length = 1522

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 agatcgtagatctcatattcttgg 424
           |||||| |||||||||||||||||
Sbjct: 777 agatcgaagatctcatattcttgg 800

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>gb|AC103949.6| Homo sapiens chromosome 18, clone RP11-671P2, complete sequence
          Length = 177301

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    aaacatctctaaatgccact 152
              ||||||||||||||||||||
Sbjct: 117250 aaacatctctaaatgccact 117231

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>gb|AC026839.7| Homo sapiens chromosome 5, clone RP11-186B13, complete sequence
          Length = 156721

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   aaacatctctaaatgccact 152
             ||||||||||||||||||||
Sbjct: 25257 aaacatctctaaatgccact 25276

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>gb|CY001739.1| Influenza A virus (A/New York/276/2002(H3N2)) segment 5, complete
           sequence
          Length = 1566

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 agatcgtagatctcatattcttgg 424
           |||||| |||||||||||||||||
Sbjct: 800 agatcgaagatctcatattcttgg 823

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>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V,
              complete sequence
          Length = 1519138

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 380    gagctggagaagaagggcct 399
              ||||||||||||||||||||
Sbjct: 214396 gagctggagaagaagggcct 214377

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>gb|AC160394.2| Mus musculus BAC clone RP23-116C19 from chromosome 9, complete sequence
          Length = 201200

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 474   tggttgatcccgacacaatctctt 497
             ||||||||||||| ||||||||||
Sbjct: 24190 tggttgatcccgaaacaatctctt 24167

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>ref|NM_065375.2| Caenorhabditis elegans CYtochrome P450 family member (cyp-25A2)
            (cyp-25A2) mRNA, complete cds
          Length = 1509

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 611  ccaaatttctgggttgagatgaac 634
            |||| |||||||||||||||||||
Sbjct: 1242 ccaattttctgggttgagatgaac 1219

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>emb|BX934130.2| Gallus gallus finished cDNA, clone ChEST267k10
          Length = 1947

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 430  gttcttcaggtcatccactt 449
            ||||||||||||||||||||
Sbjct: 1258 gttcttcaggtcatccactt 1277

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>gb|AC108022.3| Homo sapiens BAC clone RP11-9D8 from 4, complete sequence
          Length = 162609

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    tcaggtgcatataacactga 111
             ||||||||||||||||||||
Sbjct: 18559 tcaggtgcatataacactga 18578

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>dbj|AP000040.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 11/28, complete
             sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   tgctgctactggatgcttga 332
             ||||||||||||||||||||
Sbjct: 14249 tgctgctactggatgcttga 14268

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>gb|AC125435.8| Homo sapiens chromosome 15, clone CTD-2235H24, complete sequence
          Length = 124255

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 532   aaggagcagaagcagttcat 551
             ||||||||||||||||||||
Sbjct: 25062 aaggagcagaagcagttcat 25043

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>gb|CY000548.1| Influenza A virus (A/New York/115/2002(H3N2)) segment 5, complete
           sequence
          Length = 1566

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 agatcgtagatctcatattcttgg 424
           |||||| |||||||||||||||||
Sbjct: 800 agatcgaagatctcatattcttgg 823

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>gb|CY000340.1| Influenza A virus (A/New York/135/2002(H3N2)) segment 5, complete
           sequence
          Length = 1566

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 agatcgtagatctcatattcttgg 424
           |||||| |||||||||||||||||
Sbjct: 800 agatcgaagatctcatattcttgg 823

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>emb|AL954212.1| Pan troglodytes chromosome 22 clone RP43-043L10 map 22q22.11, complete
             sequence
          Length = 192328

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   tgctgctactggatgcttga 332
             ||||||||||||||||||||
Sbjct: 50412 tgctgctactggatgcttga 50431

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>emb|BX571671.3| Zebrafish DNA sequence from clone DKEY-153O22 in linkage group 20,
             complete sequence
          Length = 86323

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 433   cttcaggtcatccactttaa 452
             ||||||||||||||||||||
Sbjct: 16672 cttcaggtcatccactttaa 16691

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>emb|CT485603.4| RP43-005L22, complete sequence
          Length = 204041

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 584   aaattcttctgaagtgcttt 603
             ||||||||||||||||||||
Sbjct: 41597 aaattcttctgaagtgcttt 41616

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>ref|NM_209992.1| Eremothecium gossypii AEL222Cp (AEL222C), mRNA
          Length = 705

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 380 gagctggagaagaagggcct 399
           ||||||||||||||||||||
Sbjct: 46  gagctggagaagaagggcct 65

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>emb|Z66495.2|CEC36A4 Caenorhabditis elegans Cosmid C36A4, complete sequence
          Length = 40146

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 611  ccaaatttctgggttgagatgaac 634
            |||| |||||||||||||||||||
Sbjct: 8296 ccaattttctgggttgagatgaac 8273

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>emb|BX322618.8| Zebrafish DNA sequence from clone CH211-265G21 in linkage group 20,
             complete sequence
          Length = 144211

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 433   cttcaggtcatccactttaa 452
             ||||||||||||||||||||
Sbjct: 71855 cttcaggtcatccactttaa 71836

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>dbj|AP001715.1| Homo sapiens genomic DNA, chromosome 21q, section 59/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 313    tgctgctactggatgcttga 332
              ||||||||||||||||||||
Sbjct: 179399 tgctgctactggatgcttga 179418

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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 513     ccttgaccagggtgcgcaga 532
               ||||||||||||||||||||
Sbjct: 2966031 ccttgaccagggtgcgcaga 2966012

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>gb|CY003772.1| Influenza A virus (A/New York/417/2002(H1N2)) segment 5, complete
           sequence
          Length = 1541

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 agatcgtagatctcatattcttgg 424
           |||||| |||||||||||||||||
Sbjct: 788 agatcgaagatctcatattcttgg 811

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>gb|AC122220.4| Mus musculus BAC clone RP23-122B15 from 9, complete sequence
          Length = 188580

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 474   tggttgatcccgacacaatctctt 497
             ||||||||||||| ||||||||||
Sbjct: 22573 tggttgatcccgaaacaatctctt 22596

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>gb|CY006398.1| Influenza A virus (A/New York/487/2003(H1N2)) segment 5, complete
           sequence
          Length = 1508

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 agatcgtagatctcatattcttgg 424
           |||||| |||||||||||||||||
Sbjct: 755 agatcgaagatctcatattcttgg 778

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>gb|CY006390.1| Influenza A virus (A/New York/481/2003(H1N2)) segment 5, complete
           sequence
          Length = 1554

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 agatcgtagatctcatattcttgg 424
           |||||| |||||||||||||||||
Sbjct: 788 agatcgaagatctcatattcttgg 811

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>gb|AC015720.20| Homo sapiens chromosome 15, clone RP11-151H2, complete sequence
          Length = 174559

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 532  aaggagcagaagcagttcat 551
            ||||||||||||||||||||
Sbjct: 992  aaggagcagaagcagttcat 1011

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>dbj|AB056778.1| Macaca fascicularis brain cDNA clone:QccE-21094, full insert
           sequence
          Length = 1550

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 278 gaacaaagaggtagctgagg 297
           ||||||||||||||||||||
Sbjct: 727 gaacaaagaggtagctgagg 746

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>dbj|AP000281.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:T1588, complete sequence
          Length = 66129

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   tgctgctactggatgcttga 332
             ||||||||||||||||||||
Sbjct: 58308 tgctgctactggatgcttga 58327

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>dbj|AP000184.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             Q78C10-f32E9, segment 11/21, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   tgctgctactggatgcttga 332
             ||||||||||||||||||||
Sbjct: 20225 tgctgctactggatgcttga 20244

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>dbj|AP000108.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related,
             Q78C10-149C3 region, segment 11/20
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   tgctgctactggatgcttga 332
             ||||||||||||||||||||
Sbjct: 20225 tgctgctactggatgcttga 20244


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,316,029
Number of Sequences: 3902068
Number of extensions: 5316029
Number of successful extensions: 111178
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110972
Number of HSP's gapped (non-prelim): 205
length of query: 649
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 626
effective length of database: 17,143,297,704
effective search space: 10731704362704
effective search space used: 10731704362704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result