| Clone Name | rbags31j06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL355154.9| Human DNA sequence from clone RP11-533P8 on chromosome 13, complete sequence Length = 47799 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 acatgacttgtgcaaagtca 82 |||||||||||||||||||| Sbjct: 27692 acatgacttgtgcaaagtca 27673
>gb|AC079015.8| Homo sapiens chromosome 8, clone RP11-489O18, complete sequence Length = 157122 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 gcaaagtcaggccagatgcc 93 |||||||||||||||||||| Sbjct: 70173 gcaaagtcaggccagatgcc 70154
>gb|AC087434.3| Pan troglodytes clone RP43-90F9, complete sequence Length = 161716 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 catgacttgtgcaaagtca 82 ||||||||||||||||||| Sbjct: 41489 catgacttgtgcaaagtca 41507
>ref|XM_417003.1| PREDICTED: Gallus gallus similar to highwire; PAM; rpm 1 (LOC418808), mRNA Length = 16077 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 38 gagcttccatagtttgcaaggca 60 |||||||||||||| |||||||| Sbjct: 10903 gagcttccatagttggcaaggca 10881
>gb|AC005057.2| Homo sapiens BAC clone CTB-52H6 from 7, complete sequence Length = 99370 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 64 catgacttgtgcaaagtca 82 ||||||||||||||||||| Sbjct: 73197 catgacttgtgcaaagtca 73179
>emb|CR456621.10| Zebrafish DNA sequence from clone DKEY-37G16 in linkage group 14, complete sequence Length = 177017 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 aaatagcacacaagcaacc 24 ||||||||||||||||||| Sbjct: 32529 aaatagcacacaagcaacc 32511
>dbj|AK125156.1| Homo sapiens cDNA FLJ43166 fis, clone FCBBF3003373, moderately similar to LIM DOMAIN KINASE 1 (EC 2.7.1.-) Length = 3394 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 catgacttgtgcaaagtca 82 ||||||||||||||||||| Sbjct: 56 catgacttgtgcaaagtca 74
>gb|AC090519.3| Homo sapiens chromosome 15 clone RP11-616K22 map 15q15, complete sequence Length = 191236 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 54 caaggcagcacatgacttgtgca 76 |||||||||||| |||||||||| Sbjct: 186447 caaggcagcacaagacttgtgca 186425
>gb|AC025043.7| Homo sapiens chromosome 15 clone RP11-516C1 map 15q15, complete sequence Length = 177028 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 54 caaggcagcacatgacttgtgca 76 |||||||||||| |||||||||| Sbjct: 109195 caaggcagcacaagacttgtgca 109173
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 aaaaatagcacacaagcaa 22 ||||||||||||||||||| Sbjct: 18926213 aaaaatagcacacaagcaa 18926195
>gb|AC117376.3| Homo sapiens 12 BAC RP11-349K16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177041 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 aaaaatagcacacaagcaa 22 ||||||||||||||||||| Sbjct: 71682 aaaaatagcacacaagcaa 71664
>gb|U63721.1|HSU63721 Human elastin (ELN) gene, partial cds, and LIM-kinase (LIMK1) gene, complete cds Length = 67046 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 catgacttgtgcaaagtca 82 ||||||||||||||||||| Sbjct: 59971 catgacttgtgcaaagtca 59989
>dbj|AP003684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0485D10 Length = 147464 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 aaaaatagcacacaagcaa 22 ||||||||||||||||||| Sbjct: 91778 aaaaatagcacacaagcaa 91760
>dbj|AP004730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0009J19 Length = 156988 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 aaaaatagcacacaagcaa 22 ||||||||||||||||||| Sbjct: 18883 aaaaatagcacacaagcaa 18865
>gb|AC149787.2| Gallus gallus BAC clone TAM31-60B9 from chromosome ul, complete sequence Length = 146640 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 38 gagcttccatagtttgcaaggca 60 |||||||||||||| |||||||| Sbjct: 30345 gagcttccatagttggcaaggca 30323
>gb|U62293.1|HSU62293 Human LIM-kinase1 and alternatively spliced LIM-kinase1 (LIMK1) gene, complete cds Length = 65608 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 catgacttgtgcaaagtca 82 ||||||||||||||||||| Sbjct: 36336 catgacttgtgcaaagtca 36354 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 805,520 Number of Sequences: 3902068 Number of extensions: 805520 Number of successful extensions: 50266 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50219 Number of HSP's gapped (non-prelim): 47 length of query: 158 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 136 effective length of database: 17,147,199,772 effective search space: 2332019168992 effective search space used: 2332019168992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)