ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31j06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL355154.9| Human DNA sequence from clone RP11-533P8 on chro... 40 1.9
2gb|AC079015.8| Homo sapiens chromosome 8, clone RP11-489O18, com... 40 1.9
3gb|AC087434.3| Pan troglodytes clone RP43-90F9, complete sequence 38 7.6
4ref|XM_417003.1| PREDICTED: Gallus gallus similar to highwire; P... 38 7.6
5gb|AC005057.2| Homo sapiens BAC clone CTB-52H6 from 7, complete ... 38 7.6
6emb|CR456621.10| Zebrafish DNA sequence from clone DKEY-37G16 in... 38 7.6
7dbj|AK125156.1| Homo sapiens cDNA FLJ43166 fis, clone FCBBF30033... 38 7.6
8gb|AC090519.3| Homo sapiens chromosome 15 clone RP11-616K22 map ... 38 7.6
9gb|AC025043.7| Homo sapiens chromosome 15 clone RP11-516C1 map 1... 38 7.6
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.6
11gb|AC117376.3| Homo sapiens 12 BAC RP11-349K16 (Roswell Park Can... 38 7.6
12gb|U63721.1|HSU63721 Human elastin (ELN) gene, partial cds, and ... 38 7.6
13dbj|AP003684.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.6
14dbj|AP004730.2| Oryza sativa (japonica cultivar-group) genomic D... 38 7.6
15gb|AC149787.2| Gallus gallus BAC clone TAM31-60B9 from chromosom... 38 7.6
16gb|U62293.1|HSU62293 Human LIM-kinase1 and alternatively spliced... 38 7.6

>emb|AL355154.9| Human DNA sequence from clone RP11-533P8 on chromosome 13, complete
             sequence
          Length = 47799

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    acatgacttgtgcaaagtca 82
             ||||||||||||||||||||
Sbjct: 27692 acatgacttgtgcaaagtca 27673



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>gb|AC079015.8| Homo sapiens chromosome 8, clone RP11-489O18, complete sequence
          Length = 157122

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    gcaaagtcaggccagatgcc 93
             ||||||||||||||||||||
Sbjct: 70173 gcaaagtcaggccagatgcc 70154



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>gb|AC087434.3| Pan troglodytes clone RP43-90F9, complete sequence
          Length = 161716

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 64    catgacttgtgcaaagtca 82
             |||||||||||||||||||
Sbjct: 41489 catgacttgtgcaaagtca 41507



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>ref|XM_417003.1| PREDICTED: Gallus gallus similar to highwire; PAM; rpm 1 (LOC418808),
             mRNA
          Length = 16077

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 38    gagcttccatagtttgcaaggca 60
             |||||||||||||| ||||||||
Sbjct: 10903 gagcttccatagttggcaaggca 10881



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>gb|AC005057.2| Homo sapiens BAC clone CTB-52H6 from 7, complete sequence
          Length = 99370

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 64    catgacttgtgcaaagtca 82
             |||||||||||||||||||
Sbjct: 73197 catgacttgtgcaaagtca 73179



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>emb|CR456621.10| Zebrafish DNA sequence from clone DKEY-37G16 in linkage group 14,
             complete sequence
          Length = 177017

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     aaatagcacacaagcaacc 24
             |||||||||||||||||||
Sbjct: 32529 aaatagcacacaagcaacc 32511



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>dbj|AK125156.1| Homo sapiens cDNA FLJ43166 fis, clone FCBBF3003373, moderately
          similar to LIM DOMAIN KINASE 1 (EC 2.7.1.-)
          Length = 3394

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 64 catgacttgtgcaaagtca 82
          |||||||||||||||||||
Sbjct: 56 catgacttgtgcaaagtca 74



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>gb|AC090519.3| Homo sapiens chromosome 15 clone RP11-616K22 map 15q15, complete sequence
          Length = 191236

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 54     caaggcagcacatgacttgtgca 76
              |||||||||||| ||||||||||
Sbjct: 186447 caaggcagcacaagacttgtgca 186425



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>gb|AC025043.7| Homo sapiens chromosome 15 clone RP11-516C1 map 15q15, complete sequence
          Length = 177028

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 54     caaggcagcacatgacttgtgca 76
              |||||||||||| ||||||||||
Sbjct: 109195 caaggcagcacaagacttgtgca 109173



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 4        aaaaatagcacacaagcaa 22
                |||||||||||||||||||
Sbjct: 18926213 aaaaatagcacacaagcaa 18926195



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>gb|AC117376.3| Homo sapiens 12 BAC RP11-349K16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 177041

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     aaaaatagcacacaagcaa 22
             |||||||||||||||||||
Sbjct: 71682 aaaaatagcacacaagcaa 71664



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>gb|U63721.1|HSU63721 Human elastin (ELN) gene, partial cds, and LIM-kinase (LIMK1) gene,
             complete cds
          Length = 67046

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 64    catgacttgtgcaaagtca 82
             |||||||||||||||||||
Sbjct: 59971 catgacttgtgcaaagtca 59989



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>dbj|AP003684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0485D10
          Length = 147464

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     aaaaatagcacacaagcaa 22
             |||||||||||||||||||
Sbjct: 91778 aaaaatagcacacaagcaa 91760



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>dbj|AP004730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0009J19
          Length = 156988

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     aaaaatagcacacaagcaa 22
             |||||||||||||||||||
Sbjct: 18883 aaaaatagcacacaagcaa 18865



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>gb|AC149787.2| Gallus gallus BAC clone TAM31-60B9 from chromosome ul, complete
             sequence
          Length = 146640

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 38    gagcttccatagtttgcaaggca 60
             |||||||||||||| ||||||||
Sbjct: 30345 gagcttccatagttggcaaggca 30323



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>gb|U62293.1|HSU62293 Human LIM-kinase1 and alternatively spliced LIM-kinase1 (LIMK1) gene,
             complete cds
          Length = 65608

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 64    catgacttgtgcaaagtca 82
             |||||||||||||||||||
Sbjct: 36336 catgacttgtgcaaagtca 36354


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 805,520
Number of Sequences: 3902068
Number of extensions: 805520
Number of successful extensions: 50266
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50219
Number of HSP's gapped (non-prelim): 47
length of query: 158
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 136
effective length of database: 17,147,199,772
effective search space: 2332019168992
effective search space used: 2332019168992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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