ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags31j01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_184947.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2565 Score = 406 bits (205), Expect = e-110 Identities = 328/369 (88%) Strand = Plus / Minus Query: 291 attcacaagctgcatctgtacgtcctgcgagacagtattatgctccatatactccattgt 350 |||||| || ||||||||||| |||||||| || ||||| ||||||| ||||||||| | Sbjct: 2244 attcactagttgcatctgtacatcctgcgatacggtattgtgctccagatactccatcga 2185 Query: 351 aaactcaccttttccctgtgtcattgaacgaagcgctgtcgaatatccaaacatattgtt 410 ||| |||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct: 2184 aaattcacctttcccctgtgtcattgaccgaagagctgttgaatatccaaacatattgtt 2125 Query: 411 tagtggaacatggcatactacaactgtgtcatcgccttcctggtcatttccaacaataat 470 ||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||| || Sbjct: 2124 tagtggaacatggcaaaccacaactgtgtcgtcgccttcctgatcatttccaacaatgat 2065 Query: 471 accttttctcttgtttatgtcaccagttactgtgccctggaactctgttggaaattttag 530 ||| ||||||||||| |||||||| ||||| ||||||||||||||||| |||| |||||| Sbjct: 2064 accctttctcttgttcatgtcaccggttaccgtgccctggaactctgtaggaacttttag 2005 Query: 531 ttccaccttcatcacaggctctaatataacaggtttagcagcagtataacactgtctaaa 590 |||||| |||||||| || || ||||| |||||| ||||||||| ||||||||||||||| Sbjct: 2004 ttccactttcatcactggttccaatattacaggtctagcagcagcataacactgtctaaa 1945 Query: 591 agcatagatagcagctagcttaaacgcaagctcactggaatcgacttgatgtgaagcccc 650 ||||||||||| ||||| |||||| ||||| || |||||||| ||| ||||||||| || Sbjct: 1944 agcatagatagaagctaacttaaaagcaagttcgctggaatccactgcatgtgaagcacc 1885 Query: 651 atcagtcag 659 ||||||||| Sbjct: 1884 atcagtcag 1876
>dbj|AK122133.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133F23, full insert sequence Length = 2685 Score = 406 bits (205), Expect = e-110 Identities = 328/369 (88%) Strand = Plus / Minus Query: 291 attcacaagctgcatctgtacgtcctgcgagacagtattatgctccatatactccattgt 350 |||||| || ||||||||||| |||||||| || ||||| ||||||| ||||||||| | Sbjct: 2345 attcactagttgcatctgtacatcctgcgatacggtattgtgctccagatactccatcga 2286 Query: 351 aaactcaccttttccctgtgtcattgaacgaagcgctgtcgaatatccaaacatattgtt 410 ||| |||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct: 2285 aaattcacctttcccctgtgtcattgaccgaagagctgttgaatatccaaacatattgtt 2226 Query: 411 tagtggaacatggcatactacaactgtgtcatcgccttcctggtcatttccaacaataat 470 ||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||| || Sbjct: 2225 tagtggaacatggcaaaccacaactgtgtcgtcgccttcctgatcatttccaacaatgat 2166 Query: 471 accttttctcttgtttatgtcaccagttactgtgccctggaactctgttggaaattttag 530 ||| ||||||||||| |||||||| ||||| ||||||||||||||||| |||| |||||| Sbjct: 2165 accctttctcttgttcatgtcaccggttaccgtgccctggaactctgtaggaacttttag 2106 Query: 531 ttccaccttcatcacaggctctaatataacaggtttagcagcagtataacactgtctaaa 590 |||||| |||||||| || || ||||| |||||| ||||||||| ||||||||||||||| Sbjct: 2105 ttccactttcatcactggttccaatattacaggtctagcagcagcataacactgtctaaa 2046 Query: 591 agcatagatagcagctagcttaaacgcaagctcactggaatcgacttgatgtgaagcccc 650 ||||||||||| ||||| |||||| ||||| || |||||||| ||| ||||||||| || Sbjct: 2045 agcatagatagaagctaacttaaaagcaagttcgctggaatccactgcatgtgaagcacc 1986 Query: 651 atcagtcag 659 ||||||||| Sbjct: 1985 atcagtcag 1977
>dbj|AK102744.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106I07, full insert sequence Length = 2510 Score = 406 bits (205), Expect = e-110 Identities = 328/369 (88%) Strand = Plus / Minus Query: 291 attcacaagctgcatctgtacgtcctgcgagacagtattatgctccatatactccattgt 350 |||||| || ||||||||||| |||||||| || ||||| ||||||| ||||||||| | Sbjct: 2335 attcactagttgcatctgtacatcctgcgatacggtattgtgctccagatactccatcga 2276 Query: 351 aaactcaccttttccctgtgtcattgaacgaagcgctgtcgaatatccaaacatattgtt 410 ||| |||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct: 2275 aaattcacctttcccctgtgtcattgaccgaagagctgttgaatatccaaacatattgtt 2216 Query: 411 tagtggaacatggcatactacaactgtgtcatcgccttcctggtcatttccaacaataat 470 ||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||| || Sbjct: 2215 tagtggaacatggcaaaccacaactgtgtcgtcgccttcctgatcatttccaacaatgat 2156 Query: 471 accttttctcttgtttatgtcaccagttactgtgccctggaactctgttggaaattttag 530 ||| ||||||||||| |||||||| ||||| ||||||||||||||||| |||| |||||| Sbjct: 2155 accctttctcttgttcatgtcaccggttaccgtgccctggaactctgtaggaacttttag 2096 Query: 531 ttccaccttcatcacaggctctaatataacaggtttagcagcagtataacactgtctaaa 590 |||||| |||||||| || || ||||| |||||| ||||||||| ||||||||||||||| Sbjct: 2095 ttccactttcatcactggttccaatattacaggtctagcagcagcataacactgtctaaa 2036 Query: 591 agcatagatagcagctagcttaaacgcaagctcactggaatcgacttgatgtgaagcccc 650 ||||||||||| ||||| |||||| ||||| || |||||||| ||| ||||||||| || Sbjct: 2035 agcatagatagaagctaacttaaaagcaagttcgctggaatccactgcatgtgaagcacc 1976 Query: 651 atcagtcag 659 ||||||||| Sbjct: 1975 atcagtcag 1967
>dbj|AB040051.1| Oryza sativa (japonica cultivar-group) mEF-G mRNA for mitochondrial elongation factor G, complete cds Length = 2583 Score = 406 bits (205), Expect = e-110 Identities = 328/369 (88%) Strand = Plus / Minus Query: 291 attcacaagctgcatctgtacgtcctgcgagacagtattatgctccatatactccattgt 350 |||||| || ||||||||||| |||||||| || ||||| ||||||| ||||||||| | Sbjct: 2350 attcactagttgcatctgtacatcctgcgatacggtattgtgctccagatactccatcga 2291 Query: 351 aaactcaccttttccctgtgtcattgaacgaagcgctgtcgaatatccaaacatattgtt 410 ||| |||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct: 2290 aaattcacctttcccctgtgtcattgaccgaagagctgttgaatatccaaacatattgtt 2231 Query: 411 tagtggaacatggcatactacaactgtgtcatcgccttcctggtcatttccaacaataat 470 ||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||| || Sbjct: 2230 tagtggaacatggcaaaccacaactgtgtcgtcgccttcctgatcatttccaacaatgat 2171 Query: 471 accttttctcttgtttatgtcaccagttactgtgccctggaactctgttggaaattttag 530 ||| ||||||||||| |||||||| ||||| ||||||||||||||||| |||| |||||| Sbjct: 2170 accctttctcttgttcatgtcaccggttaccgtgccctggaactctgtaggaacttttag 2111 Query: 531 ttccaccttcatcacaggctctaatataacaggtttagcagcagtataacactgtctaaa 590 |||||| |||||||| || || ||||| |||||| ||||||||| ||||||||||||||| Sbjct: 2110 ttccactttcatcactggttccaatattacaggtctagcagcagcataacactgtctaaa 2051 Query: 591 agcatagatagcagctagcttaaacgcaagctcactggaatcgacttgatgtgaagcccc 650 ||||||||||| ||||| |||||| ||||| || |||||||| ||| ||||||||| || Sbjct: 2050 agcatagatagaagctaacttaaaagcaagttcgctggaatccactgcatgtgaagcacc 1991 Query: 651 atcagtcag 659 ||||||||| Sbjct: 1990 atcagtcag 1982
>gb|AY105058.1| Zea mays PCO134899 mRNA sequence Length = 1014 Score = 369 bits (186), Expect = 8e-99 Identities = 315/358 (87%) Strand = Plus / Minus Query: 301 tgcatctgtacgtcctgcgagacagtattatgctccatatactccattgtaaactcacct 360 |||||||| || |||||||| ||| ||||||||||| |||||||| ||||| |||||| Sbjct: 962 tgcatctgcacatcctgcgatacaacattatgctccaggtactccatcgtaaattcacct 903 Query: 361 tttccctgtgtcattgaacgaagcgctgtcgaatatccaaacatattgtttagtggaaca 420 || ||||| ||| ||| |||| ||||| | ||||||||||||||||||||| |||||| Sbjct: 902 ttcccctgagtcgctgatcgaatagctgttgcatatccaaacatattgtttagcggaaca 843 Query: 421 tggcatactacaactgtgtcatcgccttcctggtcatttccaacaataataccttttctc 480 ||||| ||||||| ||||| || |||||||| |||||||||||||| || ||||||||| Sbjct: 842 tggcaaactacaatggtgtcgtcaccttcctgctcatttccaacaatgatcccttttctc 783 Query: 481 ttgtttatgtcaccagttactgtgccctggaactctgttggaaattttagttccaccttc 540 ||||| || |||||||||||||||||||| ||||| ||||||||||| |||||||||||| Sbjct: 782 ttgttcatatcaccagttactgtgccctgaaactcagttggaaatttgagttccaccttc 723 Query: 541 atcacaggctctaatataacaggtttagcagcagtataacactgtctaaaagcatagata 600 |||||||| |||||||| |||||||| |||| ||| || ||||||| ||||||||||||| Sbjct: 722 atcacaggttctaatattacaggtttggcagaagtgtagcactgtcgaaaagcatagata 663 Query: 601 gcagctagcttaaacgcaagctcactggaatcgacttgatgtgaagccccatcagtca 658 |||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 662 gcagctagcttaaaagcaagttcactggaatccacctgatgtgaagccccatcagtca 605
>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete sequence Length = 151269 Score = 113 bits (57), Expect = 8e-22 Identities = 93/105 (88%) Strand = Plus / Minus Query: 480 cttgtttatgtcaccagttactgtgccctggaactctgttggaaattttagttccacctt 539 |||||| |||||||| ||||| ||||||||||||||||| |||| |||||||||||| || Sbjct: 140291 cttgttcatgtcaccggttaccgtgccctggaactctgtaggaacttttagttccacttt 140232 Query: 540 catcacaggctctaatataacaggtttagcagcagtataacactg 584 |||||| || || ||||| |||||| ||||||||| ||||||||| Sbjct: 140231 catcactggttccaatattacaggtctagcagcagcataacactg 140187 Score = 85.7 bits (43), Expect = 2e-13 Identities = 52/55 (94%) Strand = Plus / Minus Query: 365 cctgtgtcattgaacgaagcgctgtcgaatatccaaacatattgtttagtggaac 419 ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 141671 cctgtgtcattgaccgaagagctgttgaatatccaaacatattgtttagtggaac 141617 Score = 83.8 bits (42), Expect = 7e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 582 ctgtctaaaagcatagatagcagctagcttaaacgcaagctcactggaatcgacttgatg 641 |||||||||||||||||||| ||||| |||||| ||||| || |||||||| ||| ||| Sbjct: 140074 ctgtctaaaagcatagatagaagctaacttaaaagcaagttcgctggaatccactgcatg 140015 Query: 642 tgaagccccatcagtcag 659 |||||| ||||||||||| Sbjct: 140014 tgaagcaccatcagtcag 139997 Score = 81.8 bits (41), Expect = 3e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 418 acatggcatactacaactgtgtcatcgccttcctggtcatttccaacaataatacctttt 477 |||||||| || ||||||||||| ||||||||||| |||||||||||||| ||||| ||| Sbjct: 140683 acatggcaaaccacaactgtgtcgtcgccttcctgatcatttccaacaatgatacccttt 140624 Query: 478 ctcttgttt 486 ||| ||||| Sbjct: 140623 ctcctgttt 140615 Score = 67.9 bits (34), Expect = 4e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 291 attcacaagctgcatctgtacgtcctgcgagacagtattatgctccatatactccattgt 350 |||||| || ||||||||||| |||||||| || ||||| ||||||| ||||||||| | Sbjct: 142716 attcactagttgcatctgtacatcctgcgatacggtattgtgctccagatactccatcga 142657 Query: 351 aaactcaccttttccctg 368 ||| |||||||| ||||| Sbjct: 142656 aaattcacctttcccctg 142639
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 113 bits (57), Expect = 8e-22 Identities = 93/105 (88%) Strand = Plus / Minus Query: 480 cttgtttatgtcaccagttactgtgccctggaactctgttggaaattttagttccacctt 539 |||||| |||||||| ||||| ||||||||||||||||| |||| |||||||||||| || Sbjct: 20222205 cttgttcatgtcaccggttaccgtgccctggaactctgtaggaacttttagttccacttt 20222146 Query: 540 catcacaggctctaatataacaggtttagcagcagtataacactg 584 |||||| || || ||||| |||||| ||||||||| ||||||||| Sbjct: 20222145 catcactggttccaatattacaggtctagcagcagcataacactg 20222101 Score = 85.7 bits (43), Expect = 2e-13 Identities = 52/55 (94%) Strand = Plus / Minus Query: 365 cctgtgtcattgaacgaagcgctgtcgaatatccaaacatattgtttagtggaac 419 ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 20223585 cctgtgtcattgaccgaagagctgttgaatatccaaacatattgtttagtggaac 20223531 Score = 83.8 bits (42), Expect = 7e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 582 ctgtctaaaagcatagatagcagctagcttaaacgcaagctcactggaatcgacttgatg 641 |||||||||||||||||||| ||||| |||||| ||||| || |||||||| ||| ||| Sbjct: 20221988 ctgtctaaaagcatagatagaagctaacttaaaagcaagttcgctggaatccactgcatg 20221929 Query: 642 tgaagccccatcagtcag 659 |||||| ||||||||||| Sbjct: 20221928 tgaagcaccatcagtcag 20221911 Score = 81.8 bits (41), Expect = 3e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 418 acatggcatactacaactgtgtcatcgccttcctggtcatttccaacaataatacctttt 477 |||||||| || ||||||||||| ||||||||||| |||||||||||||| ||||| ||| Sbjct: 20222597 acatggcaaaccacaactgtgtcgtcgccttcctgatcatttccaacaatgatacccttt 20222538 Query: 478 ctcttgttt 486 ||| ||||| Sbjct: 20222537 ctcctgttt 20222529 Score = 67.9 bits (34), Expect = 4e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 291 attcacaagctgcatctgtacgtcctgcgagacagtattatgctccatatactccattgt 350 |||||| || ||||||||||| |||||||| || ||||| ||||||| ||||||||| | Sbjct: 20224630 attcactagttgcatctgtacatcctgcgatacggtattgtgctccagatactccatcga 20224571 Query: 351 aaactcaccttttccctg 368 ||| |||||||| ||||| Sbjct: 20224570 aaattcacctttcccctg 20224553
>gb|AC084404.8|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A15 genomic sequence, complete sequence Length = 156929 Score = 113 bits (57), Expect = 8e-22 Identities = 93/105 (88%) Strand = Plus / Minus Query: 480 cttgtttatgtcaccagttactgtgccctggaactctgttggaaattttagttccacctt 539 |||||| |||||||| ||||| ||||||||||||||||| |||| |||||||||||| || Sbjct: 17512 cttgttcatgtcaccggttaccgtgccctggaactctgtaggaacttttagttccacttt 17453 Query: 540 catcacaggctctaatataacaggtttagcagcagtataacactg 584 |||||| || || ||||| |||||| ||||||||| ||||||||| Sbjct: 17452 catcactggttccaatattacaggtctagcagcagcataacactg 17408 Score = 85.7 bits (43), Expect = 2e-13 Identities = 52/55 (94%) Strand = Plus / Minus Query: 365 cctgtgtcattgaacgaagcgctgtcgaatatccaaacatattgtttagtggaac 419 ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 18892 cctgtgtcattgaccgaagagctgttgaatatccaaacatattgtttagtggaac 18838 Score = 83.8 bits (42), Expect = 7e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 582 ctgtctaaaagcatagatagcagctagcttaaacgcaagctcactggaatcgacttgatg 641 |||||||||||||||||||| ||||| |||||| ||||| || |||||||| ||| ||| Sbjct: 17295 ctgtctaaaagcatagatagaagctaacttaaaagcaagttcgctggaatccactgcatg 17236 Query: 642 tgaagccccatcagtcag 659 |||||| ||||||||||| Sbjct: 17235 tgaagcaccatcagtcag 17218 Score = 81.8 bits (41), Expect = 3e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 418 acatggcatactacaactgtgtcatcgccttcctggtcatttccaacaataatacctttt 477 |||||||| || ||||||||||| ||||||||||| |||||||||||||| ||||| ||| Sbjct: 17904 acatggcaaaccacaactgtgtcgtcgccttcctgatcatttccaacaatgatacccttt 17845 Query: 478 ctcttgttt 486 ||| ||||| Sbjct: 17844 ctcctgttt 17836 Score = 67.9 bits (34), Expect = 4e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 291 attcacaagctgcatctgtacgtcctgcgagacagtattatgctccatatactccattgt 350 |||||| || ||||||||||| |||||||| || ||||| ||||||| ||||||||| | Sbjct: 19937 attcactagttgcatctgtacatcctgcgatacggtattgtgctccagatactccatcga 19878 Query: 351 aaactcaccttttccctg 368 ||| |||||||| ||||| Sbjct: 19877 aaattcacctttcccctg 19860
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 113 bits (57), Expect = 8e-22 Identities = 93/105 (88%) Strand = Plus / Minus Query: 480 cttgtttatgtcaccagttactgtgccctggaactctgttggaaattttagttccacctt 539 |||||| |||||||| ||||| ||||||||||||||||| |||| |||||||||||| || Sbjct: 20215234 cttgttcatgtcaccggttaccgtgccctggaactctgtaggaacttttagttccacttt 20215175 Query: 540 catcacaggctctaatataacaggtttagcagcagtataacactg 584 |||||| || || ||||| |||||| ||||||||| ||||||||| Sbjct: 20215174 catcactggttccaatattacaggtctagcagcagcataacactg 20215130 Score = 85.7 bits (43), Expect = 2e-13 Identities = 52/55 (94%) Strand = Plus / Minus Query: 365 cctgtgtcattgaacgaagcgctgtcgaatatccaaacatattgtttagtggaac 419 ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 20216614 cctgtgtcattgaccgaagagctgttgaatatccaaacatattgtttagtggaac 20216560 Score = 83.8 bits (42), Expect = 7e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 582 ctgtctaaaagcatagatagcagctagcttaaacgcaagctcactggaatcgacttgatg 641 |||||||||||||||||||| ||||| |||||| ||||| || |||||||| ||| ||| Sbjct: 20215017 ctgtctaaaagcatagatagaagctaacttaaaagcaagttcgctggaatccactgcatg 20214958 Query: 642 tgaagccccatcagtcag 659 |||||| ||||||||||| Sbjct: 20214957 tgaagcaccatcagtcag 20214940 Score = 81.8 bits (41), Expect = 3e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 418 acatggcatactacaactgtgtcatcgccttcctggtcatttccaacaataatacctttt 477 |||||||| || ||||||||||| ||||||||||| |||||||||||||| ||||| ||| Sbjct: 20215626 acatggcaaaccacaactgtgtcgtcgccttcctgatcatttccaacaatgatacccttt 20215567 Query: 478 ctcttgttt 486 ||| ||||| Sbjct: 20215566 ctcctgttt 20215558 Score = 67.9 bits (34), Expect = 4e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 291 attcacaagctgcatctgtacgtcctgcgagacagtattatgctccatatactccattgt 350 |||||| || ||||||||||| |||||||| || ||||| ||||||| ||||||||| | Sbjct: 20217659 attcactagttgcatctgtacatcctgcgatacggtattgtgctccagatactccatcga 20217600 Query: 351 aaactcaccttttccctg 368 ||| |||||||| ||||| Sbjct: 20217599 aaattcacctttcccctg 20217582
>dbj|AB040052.1| Oryza sativa (japonica cultivar-group) mEF-G gene for mitochondrial elongation factor G, complete cds Length = 16307 Score = 113 bits (57), Expect = 8e-22 Identities = 93/105 (88%) Strand = Plus / Minus Query: 480 cttgtttatgtcaccagttactgtgccctggaactctgttggaaattttagttccacctt 539 |||||| |||||||| ||||| ||||||||||||||||| |||| |||||||||||| || Sbjct: 13537 cttgttcatgtcaccggttaccgtgccctggaactctgtaggaacttttagttccacttt 13478 Query: 540 catcacaggctctaatataacaggtttagcagcagtataacactg 584 |||||| || || ||||| |||||| ||||||||| ||||||||| Sbjct: 13477 catcactggttccaatattacaggtctagcagcagcataacactg 13433 Score = 85.7 bits (43), Expect = 2e-13 Identities = 52/55 (94%) Strand = Plus / Minus Query: 365 cctgtgtcattgaacgaagcgctgtcgaatatccaaacatattgtttagtggaac 419 ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 14906 cctgtgtcattgaccgaagagctgttgaatatccaaacatattgtttagtggaac 14852 Score = 83.8 bits (42), Expect = 7e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 582 ctgtctaaaagcatagatagcagctagcttaaacgcaagctcactggaatcgacttgatg 641 |||||||||||||||||||| ||||| |||||| ||||| || |||||||| ||| ||| Sbjct: 13320 ctgtctaaaagcatagatagaagctaacttaaaagcaagttcgctggaatccactgcatg 13261 Query: 642 tgaagccccatcagtcag 659 |||||| ||||||||||| Sbjct: 13260 tgaagcaccatcagtcag 13243 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 418 acatggcatactacaactgtgtcatcgccttcctggtcatttccaacaataatacctttt 477 |||||||| || ||||||||||| ||||||||||| |||||||||||||| ||||| ||| Sbjct: 13927 acatggcaaaccacaactgtgtcgtcgccttcctgatcatttccaacaatgatacccttt 13868 Query: 478 ctc 480 ||| Sbjct: 13867 ctc 13865 Score = 67.9 bits (34), Expect = 4e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 291 attcacaagctgcatctgtacgtcctgcgagacagtattatgctccatatactccattgt 350 |||||| || ||||||||||| |||||||| || ||||| ||||||| ||||||||| | Sbjct: 15948 attcactagttgcatctgtacatcctgcgatacggtattgtgctccagatactccatcga 15889 Query: 351 aaactcaccttttccctg 368 ||| |||||||| ||||| Sbjct: 15888 aaattcacctttcccctg 15871
>gb|BT013844.1| Lycopersicon esculentum clone 132801F, mRNA sequence Length = 2554 Score = 109 bits (55), Expect = 1e-20 Identities = 255/318 (80%), Gaps = 4/318 (1%) Strand = Plus / Minus Query: 343 tccattgtaaactcaccttttccctgtgtcattgaacgaagcgctgtcgaatatccaaac 402 |||||||| ||||||||||| |||||||||||||| ||||| | ||| || || |||||| Sbjct: 2255 tccattgtgaactcacctttcccctgtgtcattgatcgaagagatgttgagtacccaaac 2196 Query: 403 atattgtttagtggaacat-ggca-tactacaactgtgtcatcgccttcctggtcatttc 460 || |||| || ||||||| |||| || | || | |||||| |||||||||||||| | Sbjct: 2195 atcatgttgagaggaacattggcagtaatt--acagagtcatctccttcctggtcattgc 2138 Query: 461 caacaataataccttttctcttgtttatgtcaccagttactgtgccctggaactctgttg 520 | | || | |||||| ||||| || || || ||||| || |||||||| || ||||||| Sbjct: 2137 cgattatgacacctttcctcttattgatatccccagtaacagtgccctgaaattctgttg 2078 Query: 521 gaaattttagttccaccttcatcacaggctctaatataacaggtttagcagcagtataac 580 | | ||||| |||||| ||||||||| ||||| || | ||| || || |||||||||| Sbjct: 2077 gcacttttatatccaccagcatcacaggttctaaaattataggcttggctgcagtataac 2018 Query: 581 actgtctaaaagcatagatagcagctagcttaaacgcaagctcactggaatcgacttgat 640 |||||||||||||||| |||| ||||| || || ||||| ||||| ||||| || | || Sbjct: 2017 actgtctaaaagcataaatagaagctaatttgaatgcaagttcacttgaatcaacattat 1958 Query: 641 gtgaagccccatcagtca 658 |||| || ||||| |||| Sbjct: 1957 gtgaggcaccatccgtca 1940
>gb|AC146553.12| Medicago truncatula clone mth2-9e24, complete sequence Length = 136675 Score = 73.8 bits (37), Expect = 7e-10 Identities = 143/178 (80%), Gaps = 4/178 (2%) Strand = Plus / Minus Query: 455 catttccaacaataataccttttctcttgtttatgtcaccagttactgtgccctggaact 514 |||| |||||||| | ||||||||||||||| | |||||||| || | ||||| || | Sbjct: 17694 cattgccaacaatcacaccttttctcttgttgaggtcaccagcaacagctccctgaaatt 17635 Query: 515 ctgttggaaattttagttccaccttcatcacaggctctaatataacaggtttagcagcag 574 ||||||| | ||| |||| | ||| ||||| ||||||||||| ||| | | ||| | Sbjct: 17634 ctgttggtactttcagtt----cagcataacaggttctaatataactggtctggaagctg 17579 Query: 575 tataacactgtctaaaagcatagatagcagctagcttaaacgcaagctcactggaatc 632 | ||||||| ||||||||||||||||| ||| | |||||| ||||| ||||||||||| Sbjct: 17578 tgtaacactctctaaaagcatagatagaagccaacttaaaggcaagttcactggaatc 17521 Score = 65.9 bits (33), Expect = 2e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 338 tatactccattgtaaactcaccttttccctgtgtcattgaacgaagcgctgtcgaatatc 397 |||| |||||||| || ||||| |||||||||||||| ||||||| || || ||||| | Sbjct: 17811 tatattccattgtgaattcaccctttccctgtgtcatcgaacgaatagccgtagaatacc 17752 Query: 398 caaacatattgtt 410 ||||||||||||| Sbjct: 17751 caaacatattgtt 17739
>ref|NM_130067.2| Arabidopsis thaliana GTP binding / translation elongation factor/ translation factor, nucleic acid binding AT2G45030 mRNA, complete cds Length = 2479 Score = 71.9 bits (36), Expect = 3e-09 Identities = 141/176 (80%) Strand = Plus / Minus Query: 457 tttccaacaataataccttttctcttgtttatgtcaccagttactgtgccctggaactct 516 |||||||| || |||||||| |||||||| |||||||||| || |||||||| |||||| Sbjct: 2069 tttccaacgattatacctttcctcttgttgatgtcaccagcaacagtgccctgaaactct 2010 Query: 517 gttggaaattttagttccaccttcatcacaggctctaatataacaggtttagcagcagta 576 ||||| | ||| | || ||| ||| ||||| |||| || || ||| |||| || ||| Sbjct: 2009 gttggtactttcaactcgaccagcataacaggttctagaatcaccggtctagctgctgta 1950 Query: 577 taacactgtctaaaagcatagatagcagctagcttaaacgcaagctcactggaatc 632 |||||| |||| || || || || ||||| | ||||||||||| ||||||||||| Sbjct: 1949 taacacagtctgaatgcgtatattgcagccattttaaacgcaagttcactggaatc 1894
>gb|AC151915.8| Medicago truncatula clone mth2-30n12, complete sequence Length = 92346 Score = 69.9 bits (35), Expect = 1e-08 Identities = 47/51 (92%) Strand = Plus / Plus Query: 582 ctgtctaaaagcatagatagcagctagcttaaacgcaagctcactggaatc 632 |||||||||||||||||||| ||| | |||||| ||||||||||||||||| Sbjct: 81891 ctgtctaaaagcatagatagaagccatcttaaaggcaagctcactggaatc 81941 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 365 cctgtgtcattgaacgaagcgctgtcgaatatccaaacatattgtt 410 |||||||||| |||||||| ||||| || || |||||||||||||| Sbjct: 79977 cctgtgtcatcgaacgaagagctgtagagtacccaaacatattgtt 80022
>ref|NM_103595.2| Arabidopsis thaliana GTP binding / translation elongation factor/ translation factor, nucleic acid binding AT1G45332 mRNA, complete cds Length = 2555 Score = 65.9 bits (33), Expect = 2e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 457 tttccaacaataataccttttctcttgtttatgtcaccagttactgtgccctggaactct 516 |||||||| || |||||||| |||||||| |||||||||| || |||||||| |||||| Sbjct: 2207 tttccaacgattatacctttcctcttgttgatgtcaccagcaacagtgccctgaaactct 2148 Query: 517 gttgg 521 ||||| Sbjct: 2147 gttgg 2143
>dbj|AK221917.1| Arabidopsis thaliana mRNA for putative mitochondrial translation elongation factor G, complete cds, clone: RAFL22-37-H20 Length = 1639 Score = 63.9 bits (32), Expect = 6e-07 Identities = 140/176 (79%) Strand = Plus / Minus Query: 457 tttccaacaataataccttttctcttgtttatgtcaccagttactgtgccctggaactct 516 |||||||| || |||||||| ||| |||| |||||||||| || |||||||| |||||| Sbjct: 1297 tttccaacgattatacctttcctcctgttgatgtcaccagcaacagtgccctgaaactct 1238 Query: 517 gttggaaattttagttccaccttcatcacaggctctaatataacaggtttagcagcagta 576 ||||| | ||| | || ||| ||| ||||| |||| || || ||| |||| || ||| Sbjct: 1237 gttggtactttcaactcgaccagcataacaggttctagaatcaccggtctagctgctgta 1178 Query: 577 taacactgtctaaaagcatagatagcagctagcttaaacgcaagctcactggaatc 632 |||||| |||| || || || || ||||| | ||||||||||| ||||||||||| Sbjct: 1177 taacacagtctgaatgcgtatattgcagccattttaaacgcaagttcactggaatc 1122
>gb|AC007659.2|AC007659 Arabidopsis thaliana chromosome II section 241 of 255 of the complete sequence. Sequence from clones T13E15, T14P1 Length = 87885 Score = 50.1 bits (25), Expect = 0.009 Identities = 121/153 (79%) Strand = Plus / Minus Query: 480 cttgtttatgtcaccagttactgtgccctggaactctgttggaaattttagttccacctt 539 |||||| |||||||||| || |||||||| ||||||||||| | ||| | || ||| Sbjct: 42000 cttgttgatgtcaccagcaacagtgccctgaaactctgttggtactttcaactcgaccag 41941 Query: 540 catcacaggctctaatataacaggtttagcagcagtataacactgtctaaaagcatagat 599 ||| ||||| |||| || || ||| |||| || ||||||||| |||| || || || || Sbjct: 41940 cataacaggttctagaatcaccggtctagctgctgtataacacagtctgaatgcgtatat 41881 Query: 600 agcagctagcttaaacgcaagctcactggaatc 632 ||||| | ||||||||||| ||||||||||| Sbjct: 41880 tgcagccattttaaacgcaagttcactggaatc 41848
>gb|AC145619.4| Homo sapiens BAC clone RP11-722J20 from chromosome 2, complete sequence Length = 152973 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Plus Query: 243 ctctgtgctccagaagaatcagtc 266 |||||||||||||||||||||||| Sbjct: 131543 ctctgtgctccagaagaatcagtc 131566
>gb|AC142232.2| Homo sapiens fosmid clone XXFOS-83793A7 from 2, complete sequence Length = 38599 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Plus Query: 243 ctctgtgctccagaagaatcagtc 266 |||||||||||||||||||||||| Sbjct: 18769 ctctgtgctccagaagaatcagtc 18792
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 535 accttcatcacaggctctaatataacaggttt 566 |||||||| | ||||||||||||||||||||| Sbjct: 113395 accttcataataggctctaatataacaggttt 113364
>emb|AL732325.6| Human DNA sequence from clone RP11-692N21 on chromosome X Contains part of the SH3KBP1 gene for SH3-domain kinase binding protein 1 (CIN85), complete sequence Length = 96764 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 184 atcatttgaggggcagtgaaaa 205 |||||||||||||||||||||| Sbjct: 9897 atcatttgaggggcagtgaaaa 9918
>gb|AC083835.5|AC083835 Arabidopsis thaliana chromosome 1 BAC F2G19 genomic sequence, complete sequence Length = 133379 Score = 44.1 bits (22), Expect = 0.59 Identities = 37/42 (88%) Strand = Plus / Plus Query: 480 cttgtttatgtcaccagttactgtgccctggaactctgttgg 521 |||||| |||||||||| || |||||||| ||||||||||| Sbjct: 4807 cttgttgatgtcaccagcaacagtgccctgaaactctgttgg 4848
>gb|AC149136.3| Xenopus tropicalis clone CH216-164F21, complete sequence Length = 182684 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 344 ccattgtaaactcaccttttc 364 ||||||||||||||||||||| Sbjct: 129935 ccattgtaaactcaccttttc 129955
>gb|AC164316.3| Mus musculus BAC clone RP23-16B4 from chromosome 6, complete sequence Length = 222892 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 489 gtcaccagttactgtgccctg 509 ||||||||||||||||||||| Sbjct: 4382 gtcaccagttactgtgccctg 4402
>ref|NM_064331.2| Caenorhabditis elegans Patterned Expression Site family member (pes-10) (pes-10) mRNA, complete cds Length = 1443 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tattatgctccatatactcca 346 ||||||||||||||||||||| Sbjct: 1282 tattatgctccatatactcca 1302
>emb|AL110485.5|CEY46G5A Caenorhabditis elegans YAC Y46G5A, complete sequence Length = 197908 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 tattatgctccatatactcca 346 ||||||||||||||||||||| Sbjct: 165650 tattatgctccatatactcca 165630
>emb|AL121694.4|CNS01DS9 Human chromosome 14 DNA sequence BAC R-701B16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 175160 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 511 aactctgttggaaattttagt 531 ||||||||||||||||||||| Sbjct: 126778 aactctgttggaaattttagt 126798
>gb|AC171502.2| Mus musculus BAC clone RP23-242G4 from chromosome 6, complete sequence Length = 209147 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 489 gtcaccagttactgtgccctg 509 ||||||||||||||||||||| Sbjct: 147477 gtcaccagttactgtgccctg 147497
>gb|U15304.1|CEU15304 Caenorhabditis elegans PES-10 mRNA, complete cds Length = 1443 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 tattatgctccatatactcca 346 ||||||||||||||||||||| Sbjct: 1282 tattatgctccatatactcca 1302
>emb|AL645483.7| Mouse DNA sequence from clone RP23-213O14 on chromosome 4, complete sequence Length = 87103 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 266 ctatgctcttagtggccttat 286 ||||||||||||||||||||| Sbjct: 57497 ctatgctcttagtggccttat 57477
>gb|AC133203.3| Mus musculus BAC clone RP23-85M7 from chromosome 15, complete sequence Length = 227133 Score = 40.1 bits (20), Expect = 9.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 391 gaatatccaaacatattgtttagtggaacatg 422 ||||||||| | ||| |||||||||||||||| Sbjct: 84865 gaatatccacaaataatgtttagtggaacatg 84834
>gb|AC102350.14| Mus musculus chromosome 9, clone RP23-323P3, complete sequence Length = 211216 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 aatatccaaacatattgttt 411 |||||||||||||||||||| Sbjct: 187098 aatatccaaacatattgttt 187117
>gb|AC100491.9| Mus musculus chromosome 9, clone RP23-142M14, complete sequence Length = 222845 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 aatatccaaacatattgttt 411 |||||||||||||||||||| Sbjct: 134047 aatatccaaacatattgttt 134028
>gb|AC149293.21| Medicago truncatula clone mth2-78c5, complete sequence Length = 111412 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 taaactcaccttttccctgt 369 |||||||||||||||||||| Sbjct: 38179 taaactcaccttttccctgt 38198
>gb|AC147780.10| Medicago truncatula clone mth2-36n9, complete sequence Length = 102831 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 taaactcaccttttccctgt 369 |||||||||||||||||||| Sbjct: 1615 taaactcaccttttccctgt 1634
>emb|AL355974.19| Human DNA sequence from clone RP11-403A3 on chromosome 13, complete sequence Length = 131303 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 tataatggaatcaaaatttg 238 |||||||||||||||||||| Sbjct: 74771 tataatggaatcaaaatttg 74752
>emb|AL356481.16| Human DNA sequence from clone RP11-216B9 on chromosome 9 Contains the 3' end of the GLE1L gene for GLE1 RNA export mediator-like (yeast), the SPTAN1 gene for spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ((ALPHA)II-SPECTRIN), a novel gene (MGC20486), a pseudogene similar to part of vesicle transport through interaction with t-SNAREs homolog 1B (yeast) (VTI1B), two novel genes, the 5' end of the SET gene for SET translocation (myeloid leukemia-associated) (2PP2A, I2PP2A, PHAPII, TAF-IBETA) and three CpG islands, complete sequence Length = 175666 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 231 aaaatttgtttcctctgtgctcca 254 |||||||||||||||| ||||||| Sbjct: 60661 aaaatttgtttcctctttgctcca 60638
>emb|AL356428.11| Human DNA sequence from clone RP11-343F16 on chromosome 1, complete sequence Length = 174739 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 aatcaaaatttgtttcctct 246 |||||||||||||||||||| Sbjct: 138707 aatcaaaatttgtttcctct 138726
>emb|AL606496.12| Mouse DNA sequence from clone RP23-451K23 on chromosome 13 Contains a ribosomal protein S9 (Rps9) pseudogene and a high mobility group box 1 (Hmgb1) pseudogene, complete sequence Length = 214870 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 ccaacaataataccttttct 479 |||||||||||||||||||| Sbjct: 195940 ccaacaataataccttttct 195921
>gb|AC087224.13| Homo sapiens chromosome 18, clone RP11-52C21, complete sequence Length = 156222 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 tatagctttactgtttctcc 52 |||||||||||||||||||| Sbjct: 118622 tatagctttactgtttctcc 118641
>gb|AC114277.2| Homo sapiens chromosome 5 clone CTD-2009F3, complete sequence Length = 100496 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 402 catattgtttagtggaacatggca 425 ||||||||||||| |||||||||| Sbjct: 39951 catattgtttagtagaacatggca 39928
>gb|AC026439.4| Homo sapiens chromosome 5 clone CTD-2267H19, complete sequence Length = 105081 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 catattgtttagtggaacatggca 425 ||||||||||||| |||||||||| Sbjct: 88379 catattgtttagtagaacatggca 88402
>emb|CR812484.8| Zebrafish DNA sequence from clone DKEY-83B16 in linkage group 18, complete sequence Length = 149153 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ctacaatattcatgtttgtt 85 |||||||||||||||||||| Sbjct: 80446 ctacaatattcatgtttgtt 80465
>emb|CT009758.12| Mouse DNA sequence from clone RP23-75K17 on chromosome 17, complete sequence Length = 23901 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 accttttccctgtgtcattg 376 |||||||||||||||||||| Sbjct: 10249 accttttccctgtgtcattg 10268
>emb|AL139295.6|CNS01DXE Human chromosome 14 DNA sequence BAC R-61A17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 152553 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 137 accacatgtaattctacaaatatc 160 ||||||||||||||||||| |||| Sbjct: 29860 accacatgtaattctacaactatc 29883
>gb|AC147645.3| Gallus gallus BAC clone CH261-121C23 from chromosome unknown, complete sequence Length = 158903 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 atcaaaatttgtttcctctg 247 |||||||||||||||||||| Sbjct: 33780 atcaaaatttgtttcctctg 33799
>emb|AL669959.22| Mouse DNA sequence from clone RP23-221H6 on chromosome 4, complete sequence Length = 213801 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 atggcctacaatattcatgt 80 |||||||||||||||||||| Sbjct: 98797 atggcctacaatattcatgt 98778 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,036,897 Number of Sequences: 3902068 Number of extensions: 6036897 Number of successful extensions: 116177 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115956 Number of HSP's gapped (non-prelim): 220 length of query: 669 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 646 effective length of database: 17,143,297,704 effective search space: 11074570316784 effective search space used: 11074570316784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
