>GLGB_MAIZE (Q08047) 1,4-alpha-glucan branching enzyme IIB, chloroplast|
           precursor (EC 2.4.1.18) (Starch branching enzyme IIB)
           (Q-enzyme)
          Length = 799

 Score = 65.9 bits (159), Expect = 5e-11
 Identities = 30/44 (68%), Positives = 34/44 (77%)
 Frame = -2

Query: 455 LFGGFSRLDHDVDYFTTEHPHDNRPRSFSVYTPSRTAVVYALTE 324
           LFGGFSR+ H  ++FT +  HDNRP SFSVYTPSRT VVYA  E
Sbjct: 756 LFGGFSRIHHAAEHFTADCSHDNRPYSFSVYTPSRTCVVYAPVE 799

>GLGB_HORSE (Q6EAS5) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (Brancher enzyme)
          Length = 699

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 18/38 (47%), Positives = 26/38 (68%)
 Frame = -2

Query: 452 FGGFSRLDHDVDYFTTEHPHDNRPRSFSVYTPSRTAVV 339
           +GG  RLDH+ D+F+  + H+ RP S  VY PSR A++
Sbjct: 654 YGGHQRLDHNTDFFSEPYEHNERPSSLLVYIPSRVALI 691

>GLGB_HUMAN (Q04446) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (Brancher enzyme)
          Length = 702

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = -2

Query: 452 FGGFSRLDHDVDYFTTEHPHDNRPRSFSVYTPSRTAVV 339
           +GG  RLDH  D+F+    H+ RP S  VY PSR A++
Sbjct: 657 YGGHQRLDHSTDFFSEAFEHNGRPYSLLVYIPSRVALI 694

>GLGB_MOUSE (Q9D6Y9) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (Brancher enzyme)
          Length = 702

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = -2

Query: 452 FGGFSRLDHDVDYFTTEHPHDNRPRSFSVYTPSRTAVV 339
           +GG  RLDH+ +YF     H+ RP S  VY PSR A++
Sbjct: 657 YGGHQRLDHNTNYFAEAFEHNGRPYSLLVYIPSRVALI 694

>GLGB_ORYSA (Q01401) 1,4-alpha-glucan branching enzyme, chloroplast precursor|
           (EC 2.4.1.18) (Starch branching enzyme) (Q-enzyme)
          Length = 820

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 8/48 (16%)
 Frame = -2

Query: 455 LFGGFSRLDHDVDYFTT--------EHPHDNRPRSFSVYTPSRTAVVY 336
           +FGG  R+ HDVD+FT+        E   +NRP SF V +P RT V Y
Sbjct: 708 VFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSPPRTCVAY 755

>GLGB_YEAST (P32775) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme)
          Length = 704

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 19/43 (44%), Positives = 27/43 (62%)
 Frame = -2

Query: 452 FGGFSRLDHDVDYFTTEHPHDNRPRSFSVYTPSRTAVVYALTE 324
           FGG +R++   ++FTT+   +NR     VY PSR A+V AL E
Sbjct: 662 FGGHNRINESSEFFTTDLEWNNRKNFLQVYIPSRVALVLALKE 704

>GLGB_CANGA (Q6FJV0) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme)
          Length = 706

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 18/38 (47%), Positives = 25/38 (65%)
 Frame = -2

Query: 452 FGGFSRLDHDVDYFTTEHPHDNRPRSFSVYTPSRTAVV 339
           FGG +R+D   ++FTT+   +NR     VY PSRTA+V
Sbjct: 664 FGGHNRIDEAQEFFTTDLEWNNRRNFIQVYIPSRTAIV 701

>GLGB_FELCA (Q6T308) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (Brancher enzyme)
          Length = 699

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 452 FGGFSRLDHDVDYFTTEHPHDNRPRSFSVYTPSRTAVV 339
           +GG  RLDH  ++F+    H+ RP S  VY P+R  ++
Sbjct: 654 YGGHQRLDHSTEFFSQPFKHNERPCSLLVYIPNRVGLI 691

>GLGB_EMENI (Q9Y8H3) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme)
          Length = 686

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -2

Query: 452 FGGFSRLDHDVDYFTTEHPHDNRPRSFSVYTPSRTAVVYALTE 324
           FGG  R+D    +FTT+   + R     VY P+RTA+  AL E
Sbjct: 642 FGGLGRIDQGTRFFTTDMEWNGRRNYLQVYIPTRTALALALEE 684

>GLGB_CRYNE (Q5KP87) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme)
          Length = 682

 Score = 36.6 bits (83), Expect = 0.031
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = -2

Query: 452 FGGFSRLDHDVDYFTTEHPHDNRPRSFSVYTPSRTAVVYAL 330
           FGG +R+D    YFTT    + R     VY+PSRT +V  L
Sbjct: 642 FGGHNRIDMGGRYFTTPMEWNGRKNWLQVYSPSRTVLVLGL 682

>GLGB_ASPOR (Q96VA4) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme)
          Length = 689

 Score = 36.2 bits (82), Expect = 0.040
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = -2

Query: 452 FGGFSRLDHDVDYFTTEHPHDNRPRSFSVYTPSRTAVVYALTE 324
           FGG +R   +  +FTT+   + R     VY P+RTA+V AL E
Sbjct: 645 FGGLNRNLKETRFFTTDLSWNGRSNFLQVYIPTRTALVLALEE 687

>GLGB_KLULA (Q6CX53) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme)
          Length = 719

 Score = 35.4 bits (80), Expect = 0.069
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 452 FGGFSRLDHDVD-YFTTEHPHDNRPRSFSVYTPSRTAVVYAL 330
           +GG+ R+D     YFTT+   + R     VY P+RTA+V AL
Sbjct: 670 YGGWDRIDESQSKYFTTDLKWNERNNFIQVYIPNRTALVLAL 711

>GLGB_GLOIN (Q8NKE1) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme)
          Length = 683

 Score = 35.4 bits (80), Expect = 0.069
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 455 LFGGFSRLDHDVDYFTTEHPHDNRPRSFSVYTPSRTAVV 339
           +FGG  R+D  + Y +  H  D R     VY P R A V
Sbjct: 641 IFGGHDRIDESISYHSQPHEWDGRKNYIQVYIPCRVAPV 679

>GLGB_YARLI (Q6CCT1) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme)
          Length = 691

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 452 FGGFSRLDHDVDYFTTEHPHDN-RPRSFSVYTPSRTAVVYA 333
           FGGF R+DH+     TE    N R     +Y PSR A+V+A
Sbjct: 643 FGGFGRIDHEKTRCHTEPLEWNGRANCMHIYIPSRVALVFA 683

>GLGB_ASHGO (Q757Q6) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme)
          Length = 703

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 452 FGGFSRLDHDVDYFTTEHPHDNRPRSF-SVYTPSRTAVVYA 333
           FGG  R++ +   F T     N  R+F  VY PSRTA+V A
Sbjct: 660 FGGHRRIEEENSVFHTTDLEWNGRRNFIQVYLPSRTALVLA 700

>SEM4C_MOUSE (Q64151) Semaphorin-4C precursor (Semaphorin I) (Sema I)|
           (Semaphorin C-like 1) (M-Sema F)
          Length = 834

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 248 PVASLTIHELTGVLFLPCNKQLLVLTL*GHTRPQFCSECTPRKSVAC 388
           PV SL + +   VLF     QL+ L+L   T+ +FC +C   +   C
Sbjct: 471 PVESLVLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCVLARDPYC 517

>Y455_MYCPN (P75328) Hypothetical protein MG320 homolog (H08_orf287)|
          Length = 287

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 184 SIWGRGTIPSQSRRLEQSRTVARRF 258
           ++WG   +PSQ RR +Q++T+ R F
Sbjct: 148 TVWGLSALPSQQRRYQQTQTLFRIF 172

>METL6_MOUSE (Q8BVH9) Methyltransferase-like protein 6 (EC 2.1.1.-)|
          Length = 282

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
 Frame = -3

Query: 322 KNQQLFVTRQKENS-----------SELVDCERSDGQRSETVLTAVIGRGSCLFPRC*ED 176
           KN  LF  R   N             EL  C   +GQ+  T+L A  G G+CLFP   ED
Sbjct: 43  KNWDLFYKRNSTNFFKDRHWTTREFEELRSCREYEGQKL-TLLEAGCGVGNCLFPLLEED 101

>NUOE_MYCTU (P65573) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain E) (NDH-1, chain E)
          Length = 252

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 26/77 (33%), Positives = 35/77 (45%)
 Frame = -3

Query: 334 PLQSKNQQLFVTRQKENSSELVDCERSDGQRSETVLTAVIGRGSCLFPRC*EDQMDR*LA 155
           P+   N + F  +  E++ ELVD  RSD  ++ T       RG+   P C   Q  R LA
Sbjct: 163 PVVMVNWEFFDNQTPESARELVDSLRSDTPKAPT-------RGA---PLCGFRQTSRILA 212

Query: 154 GEPSFSSDLRKKMDGPG 104
           G P    D  +   GPG
Sbjct: 213 GLPDQRPD--EGQGGPG 227

>NUOE_MYCBO (P65574) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain E) (NDH-1, chain E)
          Length = 252

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 26/77 (33%), Positives = 35/77 (45%)
 Frame = -3

Query: 334 PLQSKNQQLFVTRQKENSSELVDCERSDGQRSETVLTAVIGRGSCLFPRC*EDQMDR*LA 155
           P+   N + F  +  E++ ELVD  RSD  ++ T       RG+   P C   Q  R LA
Sbjct: 163 PVVMVNWEFFDNQTPESARELVDSLRSDTPKAPT-------RGA---PLCGFRQTSRILA 212

Query: 154 GEPSFSSDLRKKMDGPG 104
           G P    D  +   GPG
Sbjct: 213 GLPDQRPD--EGQGGPG 227

>Y320_MYCGE (P47562) Hypothetical protein MG320|
          Length = 286

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 184 SIWGRGTIPSQSRRLEQSRTV 246
           S+WG   +PSQ RR +Q++T+
Sbjct: 149 SVWGLSALPSQKRRYQQTQTL 169

>GLGB_DEBHA (Q6BXN1) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme)
          Length = 711

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
 Frame = -2

Query: 452 FGGFSRLDHD-------VDYFTTEHPHDNRPRSFSVYTPSRTAVVYALTE 324
           FGG  R++         + +FT     ++R  +   Y PSRTA+V  + E
Sbjct: 659 FGGHGRIEETNKETGEKLQFFTNNERWNDRSNALFCYIPSRTAIVLQVKE 708

>TDP2_HUMAN (Q14188) Transcription factor Dp-2 (E2F dimerization partner 2)|
          Length = 446

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -3

Query: 436 GLIMMSTTSQPNIRMTTGHALSRCTLRAELRSCMPLQSKNQQLFVTRQKENSSELVDCER 257
           GL++ ST S  N+ +TTG  L + ++   L     +     Q       ++SS    C  
Sbjct: 362 GLLLNSTQSVSNLDLTTGATLPQSSVNQGLCLDAEVALATGQFLAPNSHQSSSAASHCSE 421

Query: 256 SDGQ 245
           S G+
Sbjct: 422 SRGE 425

>METX_MYCLE (O32874) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine|
           O-trans-acetylase) (Homoserine transacetylase) (HTA)
          Length = 382

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +1

Query: 127 AGHLKTRARQQATYPSDPPSIWGRGTIPSQSRRLEQSRTVARRFAH 264
           A  + T+  Q A   +DP   W  G      R  E   T+ARRFAH
Sbjct: 188 ADQIGTQTTQIAAIKTDPN--WQGGDYYETGRAPENGLTIARRFAH 231


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,929,142
Number of Sequences: 219361
Number of extensions: 1373600
Number of successful extensions: 3374
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3374
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)