>gb|S68729.1| LHC Ib-20=light-harvesting complex I [Hordeum vulgare=barley,
           Prato, mRNA Chloroplast, 939 nt]
          Length = 939

 Score =  410 bits (207), Expect = e-112
 Identities = 255/266 (95%), Gaps = 10/266 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtagtatgttttgcc-tgttttaaaataacacgcatgggtg-atattacaagtacagcct 58
           ||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||| |
Sbjct: 919 gtagtatgttttgccatgttttaaaataacacgcatgggtatatattacaagtacagc-t 861

                                                                       
Query: 59  ccgtcggaagccatgggcgaatccacaaggacaaagtttcaccaccggaactttaagatt 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||      |||
Sbjct: 860 ccgtcggaagccatgggcgaatccacaaggacaaagtttcaccaccggaac------att 807

                                                                       
Query: 119 acaacacgtttttgcactgccacctactcctccacactttgtacatcctcagcaccccaa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 acaacacgtttttgcactgccacctactcctccacactttgtacatcctcagcaccccaa 747

                                                                       
Query: 179 aataataattcagaccacctgaaacctccttggtcggtgaaatcgacggatttattggcc 238
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aataataattcagaccacct-aaacctccttggtcggtgaaatcgacggatttattggcc 688

                                     
Query: 239 ggagatggtctggatgatggtgttgt 264
           ||||||||||||||||||||||||||
Sbjct: 687 ggagatggtctggatgatggtgttgt 662

>gb|AF287276.1|AF287276 Hordeum vulgare chlorophyll a/b-binding protein precursor (Lhca4)
           mRNA, partial cds; nuclear gene for chloroplast product
          Length = 687

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                              
Query: 230 ttattggccggagatggtctggatgatggtgttgt 264
           |||||||||||||||||||||||||||||||||||
Sbjct: 687 ttattggccggagatggtctggatgatggtgttgt 653

>gb|AC019013.2|AC019013 Genomic Sequence For Arabidopsis thaliana, Clone T5E15, Chromosome V,
             complete sequence
          Length = 114056

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 141   cctactcctccacactttgtaca 163
             |||||||||||||||||||||||
Sbjct: 37526 cctactcctccacactttgtaca 37504

>gb|AC007852.9| Drosophila melanogaster clone BACR33A10, complete sequence
          Length = 186333

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 135   ctgccacctactcctccacac 155
             |||||||||||||||||||||
Sbjct: 11776 ctgccacctactcctccacac 11756

>gb|AC007588.5| Drosophila melanogaster clone BACR30O03, complete sequence
          Length = 165177

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 135   ctgccacctactcctccacac 155
             |||||||||||||||||||||
Sbjct: 60657 ctgccacctactcctccacac 60677

>gb|AC127457.3| Homo sapiens chromosome 16 clone RP11-100F10, complete sequence
          Length = 86390

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 5     tatgttttgcctgttttaaaa 25
             |||||||||||||||||||||
Sbjct: 53886 tatgttttgcctgttttaaaa 53866

>gb|AC106782.5| Homo sapiens chromosome 16 clone RP11-347C12, complete sequence
          Length = 181001

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 5      tatgttttgcctgttttaaaa 25
              |||||||||||||||||||||
Sbjct: 155062 tatgttttgcctgttttaaaa 155042

>gb|BC036687.1| Homo sapiens cDNA clone IMAGE:5259465
          Length = 3993

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 84   caaggacaaagtttcaccacc 104
            |||||||||||||||||||||
Sbjct: 3765 caaggacaaagtttcaccacc 3785

>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 245    ggtctggatgatggtgttgtc 265
              |||||||||||||||||||||
Sbjct: 172999 ggtctggatgatggtgttgtc 172979

>gb|AC159237.2| Mus musculus BAC clone RP24-464G10 from chromosome 12, complete
             sequence
          Length = 222209

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 168   cagcaccccaaaataataatt 188
             |||||||||||||||||||||
Sbjct: 97909 cagcaccccaaaataataatt 97929

>gb|AC090883.1|AC090883 Homo sapiens chromosome 3 clone RP11-117G9 map 3p, complete sequence
          Length = 172400

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 84     caaggacaaagtttcaccacc 104
              |||||||||||||||||||||
Sbjct: 170063 caaggacaaagtttcaccacc 170083

>gb|AF276663.1|AF276663 Drosophila melanogaster comb (cg) gene, complete cds, alternatively
            spliced
          Length = 9504

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 135  ctgccacctactcctccacac 155
            |||||||||||||||||||||
Sbjct: 4304 ctgccacctactcctccacac 4324

>gb|AC027125.5| Homo sapiens chromosome 3 clone RP11-584M7 map 3p, complete sequence
          Length = 173842

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 84     caaggacaaagtttcaccacc 104
              |||||||||||||||||||||
Sbjct: 111543 caaggacaaagtttcaccacc 111563

>dbj|AK027185.1| Homo sapiens cDNA: FLJ23532 fis, clone LNG06911
          Length = 3189

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 84   caaggacaaagtttcaccacc 104
            |||||||||||||||||||||
Sbjct: 2950 caaggacaaagtttcaccacc 2970

>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 242    gatggtctggatgatggtgtt 262
              |||||||||||||||||||||
Sbjct: 631602 gatggtctggatgatggtgtt 631582

>gb|AE003815.4| Drosophila melanogaster chromosome 2R, section 35 of 73 of the complete
             sequence
          Length = 229685

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 135   ctgccacctactcctccacac 155
             |||||||||||||||||||||
Sbjct: 31518 ctgccacctactcctccacac 31538

>gb|AC127582.4| Mus musculus BAC clone RP24-89J3 from 12, complete sequence
          Length = 217949

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 168  cagcaccccaaaataataatt 188
            |||||||||||||||||||||
Sbjct: 9849 cagcaccccaaaataataatt 9829

>gb|AC024608.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-333I24, complete
              sequence
          Length = 215829

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    catcctcagcaccccaaaat 181
              ||||||||||||||||||||
Sbjct: 132164 catcctcagcaccccaaaat 132183

>ref|XM_535195.2| PREDICTED: Canis familiaris similar to inter-alpha globulin
           inhibitor H2 polypeptide (LOC478011), mRNA
          Length = 2941

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 tggtctggatgatggtgttg 263
           ||||||||||||||||||||
Sbjct: 377 tggtctggatgatggtgttg 358

>emb|BX469902.7| Zebrafish DNA sequence from clone CH211-277G23 in linkage group 9,
             complete sequence
          Length = 179135

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   caccccaaaataataattca 190
             ||||||||||||||||||||
Sbjct: 16903 caccccaaaataataattca 16922

>gb|AC148098.3| Medicago truncatula clone mth2-15b16, complete sequence
          Length = 97953

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 9    ttttgcctgttttaaaataacacg 32
            |||| |||||||||||||||||||
Sbjct: 6585 ttttccctgttttaaaataacacg 6562

>gb|AC073160.8| Homo sapiens chromosome 10 clone RP11-348G8, complete sequence
          Length = 189817

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     tgttttgcctgttttaaaat 26
             ||||||||||||||||||||
Sbjct: 96259 tgttttgcctgttttaaaat 96278

>gb|AC116335.2| Homo sapiens chromosome 5 clone CTD-2297M2, complete sequence
          Length = 88370

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     ttttgcctgttttaaaataa 28
             ||||||||||||||||||||
Sbjct: 77685 ttttgcctgttttaaaataa 77704

>gb|AC008839.7| Homo sapiens chromosome 5 clone CTD-2152D10, complete sequence
          Length = 104412

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     ttttgcctgttttaaaataa 28
             ||||||||||||||||||||
Sbjct: 75260 ttttgcctgttttaaaataa 75241

>gb|AC150207.2| Medicago truncatula chromosome 2 BAC clone mte1-29a5, complete sequence
          Length = 124676

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     ttttgcctgttttaaaataacacg 32
             |||| |||||||||||||||||||
Sbjct: 17875 ttttccctgttttaaaataacacg 17852

>gb|AC097525.3| Homo sapiens BAC clone RP11-627E8 from 2, complete sequence
          Length = 55514

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    catgggtgatattacaagta 52
             ||||||||||||||||||||
Sbjct: 11077 catgggtgatattacaagta 11096

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 237     ccggagatggtctggatgatggtg 260
               ||||||||||||||||||| ||||
Sbjct: 5018847 ccggagatggtctggatgagggtg 5018824

>gb|AY109341.1| Zea mays CL4601_3 mRNA sequence
          Length = 1460

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 ggtctggatgatggtgttgt 264
           ||||||||||||||||||||
Sbjct: 280 ggtctggatgatggtgttgt 299


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,898,500
Number of Sequences: 3902068
Number of extensions: 2898500
Number of successful extensions: 51174
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51113
Number of HSP's gapped (non-prelim): 57
length of query: 265
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 243
effective length of database: 17,147,199,772
effective search space: 4166769544596
effective search space used: 4166769544596
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)