>PDIA6_MEDSA (P38661) Probable protein disulfide-isomerase A6 precursor (EC|
           5.3.4.1) (P5)
          Length = 364

 Score =  162 bits (411), Expect = 6e-40
 Identities = 80/122 (65%), Positives = 99/122 (81%)
 Frame = -2

Query: 666 RDLXDFVKFINEKSGTSRDSKGQLTSEAGLVASLDALVKDFHSAADDKRKEILSKIEEEA 487
           RDL DFV FINEKSGTSRD+KGQLTSEAG+V  LD LVK+F +A D+++K + ++IEEE 
Sbjct: 242 RDLDDFVAFINEKSGTSRDAKGQLTSEAGIVEDLDELVKEFVAANDEEKKAVFARIEEEV 301

Query: 486 AKLSGPAVKHGKIYVNVAKKILQKGSDYTKKETERLHRLLEKSISPSKADEFAIKKNILS 307
            KL G A ++GKIY+ V+KK L+KGSDY K E +RL RLLEKSISP+KADE  +KKNILS
Sbjct: 302 KKLEGSASRYGKIYLKVSKKYLEKGSDYAKNEIQRLERLLEKSISPAKADELTLKKNILS 361

Query: 306 AF 301
            +
Sbjct: 362 TY 363

>PDIA6_ARATH (O22263) Probable protein disulfide-isomerase A6 precursor (EC|
           5.3.4.1) (P5)
          Length = 361

 Score =  160 bits (404), Expect = 4e-39
 Identities = 78/122 (63%), Positives = 100/122 (81%)
 Frame = -2

Query: 666 RDLXDFVKFINEKSGTSRDSKGQLTSEAGLVASLDALVKDFHSAADDKRKEILSKIEEEA 487
           RDL DFV FINEKSGTSRDSKGQLTS+AG+V SLDALVK+  +A++D++K +LS+IEEEA
Sbjct: 236 RDLDDFVSFINEKSGTSRDSKGQLTSKAGIVESLDALVKELVAASEDEKKAVLSRIEEEA 295

Query: 486 AKLSGPAVKHGKIYVNVAKKILQKGSDYTKKETERLHRLLEKSISPSKADEFAIKKNILS 307
           + L G   ++GK+Y+ +AK  ++KGSDY  KETERL R+L KSISP KADE  +K+NIL+
Sbjct: 296 STLKGSTTRYGKLYLKLAKSYIEKGSDYASKETERLGRVLGKSISPVKADELTLKRNILT 355

Query: 306 AF 301
            F
Sbjct: 356 TF 357

>ERP38_NEUCR (Q92249) Protein disulfide-isomerase erp38 precursor (EC 5.3.4.1)|
           (ERp38)
          Length = 369

 Score = 70.5 bits (171), Expect = 4e-12
 Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
 Frame = -2

Query: 666 RDLXDFVKFINEKSGTSRDSKGQLTSEAGLVASLDALVKDFHSAADDKRKEILSKIEEEA 487
           R   D VKF+NEK+GT R   G L + AG +A+LD +V  +   A     E+  + +E  
Sbjct: 237 RSEADLVKFLNEKAGTHRTPGGGLDTVAGTIAALDEIVAKYTGGA--SLAEVAEEAKEAV 294

Query: 486 AKLSGPA-VKHGKIYVNVAKKILQKGSDYTKKETERLHRLLEK-SISPSKADEFAIKKNI 313
             L   A +K+   Y+ V  K L K   Y  KE  RL  +L+K  ++P+K DE  +K N+
Sbjct: 295 KSLKNSAELKYADYYLRVLDK-LSKSEGYATKEFARLEGILKKGGLAPAKVDELTVKVNV 353

Query: 312 LSAF 301
           L  F
Sbjct: 354 LRKF 357

>PDI2_SCHPO (O13811) Protein disulfide-isomerase C17H9.14c precursor (EC|
           5.3.4.1)
          Length = 359

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
 Frame = -2

Query: 666 RDLXDFVKFINEKSGTSRDSKGQLTSEAGLVASLDALVKDFHSAADDKRKEILSKIEEEA 487
           R L   +++IN+KSGT R   G L S AG + + D    +F   ++  ++ +L K+++ A
Sbjct: 236 RSLESLIEYINKKSGTQRSPDGTLLSTAGRIPTFDEFAAEFLDMSNAAKEVVLEKVKQLA 295

Query: 486 AKLSGPAVKHGKIYVNVAKKILQKGSDYTKKETERLHRLL-EKSISPSKADEFAIKKNIL 310
            + S    +  K Y  V +KIL    ++  KE +RL +LL +KSI+ + AD+F  + NIL
Sbjct: 296 LEDSS---RWTKYYKKVFEKIL-NDENWVHKEAKRLSKLLRQKSIALASADDFKTRLNIL 351

Query: 309 SAF 301
           ++F
Sbjct: 352 NSF 354

>TIGA_ASPNG (Q00216) Protein disulfide-isomerase tigA precursor (EC 5.3.4.1)|
          Length = 359

 Score = 66.2 bits (160), Expect = 8e-11
 Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
 Frame = -2

Query: 651 FVKFINEKSGTSRDSKGQLTSEAGLVASLDALVKDFHSAADDKRKEILSKIEEEAAKLSG 472
           F+ F+NEK+GT R   G L ++AG +ASLD L+    SAAD     + + +++ A +L  
Sbjct: 241 FIDFLNEKTGTHRTVGGGLDTKAGTIASLDELIAS-TSAAD-----LAAAVKKAATELKD 294

Query: 471 PAVKHGKIYVNVAKKILQKGSDYTKKETERLHRLLEKSIS-PSKADEFAIKKNILSAF 301
              K+ + YV VA K L + ++Y  KE  RL ++L K  S P K D+   + NIL  F
Sbjct: 295 ---KYAQYYVKVADK-LSQNAEYAAKELARLEKILAKGGSAPEKVDDLISRSNILRKF 348

>ERP29_MOUSE (P57759) Endoplasmic reticulum protein ERp29 precursor|
          Length = 262

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
 Frame = -2

Query: 582 GLVASLDALVKDFHSAAD-DKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAKKILQKGSD 406
           G + + DAL  +F  A+  + R+ IL + ++    +     K    Y+ +  KIL +G D
Sbjct: 158 GCLPAYDALAGEFIKASSIEARQAILKQGQDGLLSVKETEKKWASQYLKIMGKILDQGED 217

Query: 405 YTKKETERLHRLLEKSISPSKADEFAIKKNILSAF 301
           +   E  R+ +L+E  +S SK +E     NIL+AF
Sbjct: 218 FPASEMARIGKLIENKMSDSKKEELQKSLNILTAF 252

>ERP29_RAT (P52555) Endoplasmic reticulum protein ERp29 precursor (ERp31)|
          Length = 260

 Score = 46.6 bits (109), Expect = 7e-05
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = -2

Query: 582 GLVASLDALVKDFHSAAD-DKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAKKILQKGSD 406
           G + + DAL   F  A+  + R+ IL + ++  + +     K    Y+ +  KIL +G D
Sbjct: 156 GCLPAYDALAGQFIEASSREARQAILKQGQDGLSGVKETDKKWASQYLKIMGKILDQGED 215

Query: 405 YTKKETERLHRLLEKSISPSKADEFAIKKNILSAF 301
           +   E  R+ +L+E  +S  K +E     NIL+AF
Sbjct: 216 FPASELARISKLIENKMSEGKKEELQRSLNILTAF 250

>ERP29_HUMAN (P30040) Endoplasmic reticulum protein ERp29 precursor (ERp31)|
           (ERp28)
          Length = 261

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
 Frame = -2

Query: 582 GLVASLDALVKDFHSAAD-DKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAKKILQKGSD 406
           G +   DAL  +F  A+  + R+ +L + ++  + +     K  + Y+ +  KIL +G D
Sbjct: 156 GCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIMGKILDQGED 215

Query: 405 YTKKETERLHRLLEKS-ISPSKADEFAIKKNILSAF 301
           +   E  R+ RL+EK+ +S  K +E     NIL+AF
Sbjct: 216 FPASEMTRIARLIEKNKMSDGKKEELQKSLNILTAF 251

>ERP29_CHICK (P81628) Endoplasmic reticulum protein ERp29 (Fragment)|
          Length = 228

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = -2

Query: 609 SKGQLTSEAGLVASLDALVKDFHSAAD-DKRKEILSKIEEEAAKLSGPAVKHGKIYVNVA 433
           S G      G +   D L   F S  D  +R+ +L K ++   K      K  + Y+ + 
Sbjct: 138 SNGIYLGMPGCLKEYDVLASKFMSVTDKSERQSLLKKGQQSLEKAKETEKKSAEQYLKIM 197

Query: 432 KKILQKGSDYTKKETERLHRLLEKS 358
            KIL++G ++   E  R+ +L+EK+
Sbjct: 198 SKILEQGEEFAANEVVRITKLIEKT 222

>LAMA2_HUMAN (P24043) Laminin alpha-2 chain precursor (Laminin M chain) (Merosin|
            heavy chain)
          Length = 3110

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
 Frame = -2

Query: 621  TSRDSKGQLTSEAGLVASLDALVKDFHSAADDKRKEILSKIEEEAAKLSGPAVKHGKIYV 442
            T  D+ G+L++     A+    VKD    A+D  K++L++I E    L G    + K+  
Sbjct: 2015 TLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVLAQITELHQNLDGLKKNYNKLAD 2074

Query: 441  NVAK-----------KILQKGSDYTKKETERLHRLLEKSISPSKADEFAIKKNI 313
            +VAK           KI+       K   +   RL++K + P K  E  +KKNI
Sbjct: 2075 SVAKTNAVVKDPSKNKIIADADATVKNLEQEADRLIDK-LKPIKELEDNLKKNI 2127

>FLAA_VIBAN (Q60246) Flagellin A|
          Length = 379

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 21/67 (31%), Positives = 35/67 (52%)
 Frame = -2

Query: 618 SRDSKGQLTSEAGLVASLDALVKDFHSAADDKRKEILSKIEEEAAKLSGPAVKHGKIYVN 439
           +RD K + T++AG + +LD L KD      D  +E+ + I  +  KL     + GK+ + 
Sbjct: 192 ARDLKFEFTTQAGELVTLDVLAKD-----GDDIEELATYINGQTDKLKASVDQDGKLQIF 246

Query: 438 VAKKILQ 418
            A+  LQ
Sbjct: 247 AAEPNLQ 253

>H1_TETTH (P10156) Histone H1|
          Length = 163

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
 Frame = -2

Query: 612 DSKGQLTSEAGLVASLDALVKDFHSAADDKRKEILSKIEEEAAKLSGPAVKHGKIYVNVA 433
           D+K ++     +  ++    K  H+AA DK+       +E A K   P  K         
Sbjct: 58  DTKKKIHKTKTMKETVSDAKKTVHAAAGDKKLSKKRPAKEAAKKAINPG-KKAAAQPKST 116

Query: 432 KKILQKGSDYTKKETERLH----RLLEKSISPSKAD 337
           KK ++K +   KKET++ H    +  +K   P+K D
Sbjct: 117 KKEVKKDNKTAKKETKKDHKPAKKEAKKETKPAKKD 152

>KAPR_USTMA (P49605) cAMP-dependent protein kinase regulatory subunit (PKA|
           regulatory subunit)
          Length = 522

 Score = 27.7 bits (60), Expect(2) = 2.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 452 RSM*TLQRRYCRRALTIQRRKLRGSIACWRSRSVLPKPMNSPSR 321
           R M T  RRY R  +  QRR+ + ++A   + +  P PM+S ++
Sbjct: 466 RRMATSIRRYMRMRMRTQRRRQQRALARSGADTSFPHPMDSSAK 509



 Score = 22.3 bits (46), Expect(2) = 2.4
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -2

Query: 609 SKGQLTSEAGLVASLDALVKDFHSAADDKRKEILSKIEEEAAKLSGP 469
           S+G    E  L+ +  A       A DD R  +++  E    +L GP
Sbjct: 409 SRGDYFGELALLNNRCAATVAAAGATDDARLRVVTMSERAFTRLLGP 455

>ZN544_HUMAN (Q6NX49) Zinc finger protein 544|
          Length = 715

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = -1

Query: 442 ERCKEDIAEGL*LYKEGN*EAPSLV-GEVDQSFQSR*IRHQEEHSFSFLLL 293
           +R +E+++  + +Y+ G  E PSLV G+V    QS  +R  +E+S  F++L
Sbjct: 97  DRAREELSHHVEVYRSGPEEPPSLVLGKVQD--QSNQLREHQENSLRFMVL 145

>ATPF_BACPF (P22481) ATP synthase B chain (EC 3.6.3.14)|
          Length = 163

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 20/86 (23%), Positives = 39/86 (45%)
 Frame = -2

Query: 609 SKGQLTSEAGLVASLDALVKDFHSAADDKRKEILSKIEEEAAKLSGPAVKHGKIYVNVAK 430
           SK  L    G++   + ++ +  S+A+  RK+  + I E+   L    ++  +I  N  K
Sbjct: 25  SKFALKPLLGIMEKREQMINEQISSAEKNRKDSEAFIAEQRQALEQARMEANEIIQNAKK 84

Query: 429 KILQKGSDYTKKETERLHRLLEKSIS 352
              Q+G D  K       R+ E +++
Sbjct: 85  LSEQQGQDIVKAARNDAERIKESAVA 110

>METK_HAEDU (Q7VNG7) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine|
           adenosyltransferase) (AdoMet synthetase) (MAT)
          Length = 386

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
 Frame = -2

Query: 612 DSKGQLTS--EAGLVASLDALVKDFHSAADDKRKEILSKIEEEAAKLSGPAV---KHGKI 448
           D+K QLT   E   +  +DA+V     A + K+KE++  + EE  K + P+    +H K 
Sbjct: 169 DAKSQLTFAYENNQIIGIDAVVLSTQHAEEVKQKELIEGVMEEIIKPTLPSKWLNQHTKY 228

Query: 447 YVN 439
           ++N
Sbjct: 229 FIN 231

>TRM6_YEAST (P41814) tRNA (adenine-N(1)-)-methyltransferase non-catalytic|
           subunit TRM6 (tRNA(m1A58)-methyltransferase subunit
           TRM6) (tRNA(m1A58)MTase subunit TRM6) (General control
           nonderepressible protein 10) (Protein GCD10)
          Length = 478

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 24/104 (23%), Positives = 47/104 (45%)
 Frame = -2

Query: 627 SGTSRDSKGQLTSEAGLVASLDALVKDFHSAADDKRKEILSKIEEEAAKLSGPAVKHGKI 448
           S  +RDSK +     G V  L   +KD ++  DD + E    I+E++  L   ++     
Sbjct: 66  SDENRDSKPKNKIPIGKVRLLSQEIKDVNNDKDDGQSEPPLSIKEKSVSLELSSIDSSAT 125

Query: 447 YVNVAKKILQKGSDYTKKETERLHRLLEKSISPSKADEFAIKKN 316
             N    ++  GS   +   E + ++ ++S+S  +  +  IK +
Sbjct: 126 NQN----LVNMGSKAQELTVEEIEKMKQESLSSKEIIDKIIKSH 165

>RABE1_RAT (O35550) Rab GTPase-binding effector protein 1 (Rabaptin-5)|
           (Rabaptin-5alpha)
          Length = 862

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
 Frame = -2

Query: 561 ALVKDFHSAADDKRKEI-LSKIEE-----EAAKLSGPAVKHGKIYVNVAKKILQKGSDYT 400
           A +KD  + A+DK KE+  SK++E     EA K     ++     +N  K +LQ+ ++  
Sbjct: 196 AALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKL 255

Query: 399 KKETERLHRLLEK 361
           +KE   +  LLE+
Sbjct: 256 RKELHEVCHLLEQ 268

>RABE1_MOUSE (O35551) Rab GTPase-binding effector protein 1 (Rabaptin-5)|
           (Rabaptin-5alpha)
          Length = 862

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
 Frame = -2

Query: 561 ALVKDFHSAADDKRKEI-LSKIEE-----EAAKLSGPAVKHGKIYVNVAKKILQKGSDYT 400
           A +KD  + A+DK KE+  SK++E     EA K     ++     +N  K +LQ+ ++  
Sbjct: 196 AALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKL 255

Query: 399 KKETERLHRLLEK 361
           +KE   +  LLE+
Sbjct: 256 RKELHEVCHLLEQ 268

>RABE1_HUMAN (Q15276) Rab GTPase-binding effector protein 1 (Rabaptin-5)|
           (Rabaptin-5alpha) (Rabaptin-4) (NY-REN-17 antigen)
          Length = 862

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
 Frame = -2

Query: 561 ALVKDFHSAADDKRKEI-LSKIEE-----EAAKLSGPAVKHGKIYVNVAKKILQKGSDYT 400
           A +KD  + A+DK KE+  SK++E     EA K     ++     +N  K +LQ+ ++  
Sbjct: 196 AALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKL 255

Query: 399 KKETERLHRLLEK 361
           +KE   +  LLE+
Sbjct: 256 RKELHEVCHLLEQ 268

>FEN_PYRHO (O50123) Flap structure-specific endonuclease (EC 3.1.-.-)|
          Length = 343

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 28/109 (25%)
 Frame = -2

Query: 660 LXDFVKFINEKSGTS-RDSKGQLTS-------------EAGLVAS--LDALVKDFHSAAD 529
           +  F+  I ++ GT   DSKG++TS             EAG+  +   D    +F     
Sbjct: 32  IYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFDGKPPEFKRKEL 91

Query: 528 DKRKEILSKIE------------EEAAKLSGPAVKHGKIYVNVAKKILQ 418
           +KR+E   + E            EEA K +  A K  ++ +  AKK+LQ
Sbjct: 92  EKRREAREEAELKWKEALAKGNLEEARKYAQRATKVNEMLIEDAKKLLQ 140

>FEN_PYRAB (Q9V0P9) Flap structure-specific endonuclease (EC 3.1.-.-)|
          Length = 343

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 28/109 (25%)
 Frame = -2

Query: 660 LXDFVKFINEKSGTS-RDSKGQLTS-------------EAGL--VASLDALVKDFHSAAD 529
           +  F+  I ++ GT   DSKG++TS             EAG+  V   D     F     
Sbjct: 32  IYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPVYVFDGKPPAFKKKEL 91

Query: 528 DKRKEILSKIE------------EEAAKLSGPAVKHGKIYVNVAKKILQ 418
           +KR+E   + E            EEA K +  A K  ++ +  AKK+LQ
Sbjct: 92  EKRREAREEAEIKWKEALAKGDIEEARKYAQRATKVNEMLIEDAKKLLQ 140

>PRIA_CHLTR (O84783) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase|
           priA) (Replication factor Y)
          Length = 753

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = -2

Query: 423 LQKGSDYTKKETERLHRLLEKSI 355
           L K SDYT KET+R+H L+++++
Sbjct: 666 LGKCSDYTLKETQRVHTLIKQNL 688

>IF2P_HUMAN (O60841) Eukaryotic translation initiation factor 5B (eIF-5B)|
           (Translation initiation factor IF-2)
          Length = 1220

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
 Frame = -2

Query: 606 KGQLTSEAGLVASLDALVKDFHSAADD---------KRKEILSKIEEEAAKLSGPAVKHG 454
           K ++T + G++ + +   +   +A DD         K+K+   K E+E  K  GP+    
Sbjct: 282 KSKVTVDTGVIPASEEKAETPTAAEDDNEGDKKKKDKKKKKGEKEEKEKEKKKGPSKATV 341

Query: 453 KIYVNVAKKILQKGSDYTKKETERLHRLLE 364
           K       K+ ++     ++E ER+ RL E
Sbjct: 342 KAMQEALAKLKEEEERQKREEEERIKRLEE 371


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,677,925
Number of Sequences: 219361
Number of extensions: 1778006
Number of successful extensions: 6294
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 6062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6289
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)