>YDQ4_SCHPO (O14197) Hypothetical protein C5D6.04 in chromosome I|
          Length = 452

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
 Frame = -2

Query: 484 IPCITLILGGNL---------TQGLRKSVLKRSVIVAIVCIRYVAMPVIGIAVVRAAHGV 332
           +P I ++LG +L         TQ +RK+   R +IV ++      M V+ +A++ A   +
Sbjct: 322 VPMILVVLGASLATDISKTEPTQEVRKNNDTRVIIVCLLG----RMVVVPLALLPAFSLL 377

Query: 331 GFLPH-----DPLYRYVLMLQFALPPAMNIGTMAQLFDVGQEECSVIFLWTYLV 185
            +        DP++  V+ L    P A+ +  + QL  V + EC+ +  W+Y V
Sbjct: 378 SYFSEISTVDDPVFVVVIFLLVGSPTAIQLTQICQLNGVFERECAKVLWWSYAV 431

>YB8B_YEAST (P38355) Protein YBR287W|
          Length = 427

 Score = 38.1 bits (87), Expect = 0.022
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
 Frame = -2

Query: 487 TIPCITLILGGNL---TQGLRKSVLKRSVIVAIVCIRYVA-----MPVIGIAVVRAAHGV 332
           +IP I ++LG NL    +   K+V    +++  +  R +      +P+I IAV      V
Sbjct: 299 SIPLILVVLGSNLYPSAEVFPKTVHHSKLLIGSIIGRMILPSCFLLPIIAIAVKYI--NV 356

Query: 331 GFLPHDPLYRYVLMLQFALPPAMNIGTMAQLFDVGQEECSVIFLWTYLVAAVALT 167
             L  DP++  V  L    PPA+ +  + QL +  + E + I  W Y V ++ ++
Sbjct: 357 SILD-DPIFLVVGFLLTVSPPAIQLTQITQLNEFFEAEMADILFWGYAVLSLPVS 410

>MDCF_RHIME (P56949) Putative malonate transporter|
          Length = 320

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 28/105 (26%), Positives = 45/105 (42%)
 Frame = -2

Query: 481 PCITLILGGNLTQGLRKSVLKRSVIVAIVCIRYVAMPVIGIAVVRAAHGVGFLPHDPLYR 302
           PC    +G  +T  LR      + I  IV  + V  PV+    +          +DP++ 
Sbjct: 206 PCALFAMG--VTLALRPLKRIPAEIGYIVPAKLVLHPVLMYLALSLGGA-----YDPIWV 258

Query: 301 YVLMLQFALPPAMNIGTMAQLFDVGQEECSVIFLWTYLVAAVALT 167
              +L  +LP A N+  + Q + V QE  S   L T L++   +T
Sbjct: 259 QTAVLLASLPTATNVFVIGQQYGVWQERASATILITTLLSVATVT 303

>YL152_YEAST (P54072) Protein YLR152C|
          Length = 576

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
 Frame = -2

Query: 493 NGTIPCITLILGGNLTQGLRKSVLKRSVIVAIV--CIRYVAMPVIGIAVVRAAHGVGFLP 320
           N  +P   L+LGG L +   KS+    +  A++  C R + +P+IG+  V   + + +L 
Sbjct: 448 NACVPLGLLLLGGTLARLEIKSLPPGFIKSALLMTCFRLIVIPIIGVLWVNKLYSIDWL- 506

Query: 319 HDPLYRYVLMLQFALPPA 266
              + ++ ++L +++P A
Sbjct: 507 DTGIGKFDMILTWSMPSA 524

>GLK_RHIME (Q92T27) Glucokinase (EC 2.7.1.2) (Glucose kinase)|
          Length = 339

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 116 SWLPASGEDGHEDGGPCGERD 178
           +W+P  GE GH D GP  ERD
Sbjct: 159 TWIPVPGEGGHVDIGPRTERD 179

>CKX1_MAIZE (Q9T0N8) Cytokinin dehydrogenase 1 precursor (EC 1.5.99.12)|
           (Cytokinin oxidase 1) (CKO 1) (COX 1) (ZmCKX1)
          Length = 534

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
 Frame = -2

Query: 457 GNLTQGLRKSVLKRSVIVAIVCIRYVAMPVIGIAVVRAAHGVG-------FLPHDPLYRY 299
           GN+T  L  +VL  S    +V +   A    G     A  G G       F P   +   
Sbjct: 62  GNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNM 121

Query: 298 VLMLQFALPPAMNIGTMAQLFDVGQEECSVIFLWTYLVAAVALTTWS 158
             +   A PP +N+    +  D G E+  +  L   L   VA  +W+
Sbjct: 122 ASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWN 168

>YM05_YEAST (Q04472) Hypothetical 58.0 kDa protein in ILV2-ADE17 intergenic|
           region
          Length = 501

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +2

Query: 158 GPCGERDRGDEVRPQEDHRALLLPDVEQLRHGPDVHGGRQRKLQHQHVPVERIMGKEPD 334
           G   E +RG+ +R  +D R L    ++ L    D+  G+++ LQH  +  E I+ K P+
Sbjct: 192 GKVDESERGEVLR--KDLRIL----IKSLEINKDIESGKRKLLQHLLLAQEEILSKSPE 244

>POLG_CSFVB (P21530) Genome polyprotein [Contains: N-terminal protease (EC|
            3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein C;
            E(rns) glycoprotein (gp44/48); Envelope glycoprotein E1
            (gp33); Envelope glycoprotein E2 (gp55); p7;
            Nonstructural protein 2
          Length = 3898

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 24/75 (32%), Positives = 36/75 (48%)
 Frame = +3

Query: 12   IQKEWRVYLQTLYEHFTNGIYRNSPCPPTKLNCKVHGCLLQERMDMKTVDHVVSATAATR 191
            +++E+  YLQ  Y        RN P   TK+   + G L  E  D++ +  V+   A   
Sbjct: 1538 VREEYAGYLQ--YRARGQLFLRNLPVLATKVKMLLVGNLGTEVGDLEHLGWVLRGPA--- 1592

Query: 192  YVHRKITEHSSCPTS 236
             V +K+TEH  C TS
Sbjct: 1593 -VCKKVTEHEKCTTS 1606

>GLK_BRUSU (Q8FV09) Glucokinase (EC 2.7.1.2) (Glucose kinase)|
          Length = 343

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 116 SWLPASGEDGHEDGGPCGERD 178
           +W+P  GE GH D GP  ERD
Sbjct: 161 AWVPVPGEGGHIDIGPRTERD 181

>GLK_BRUME (Q8YDC6) Glucokinase (EC 2.7.1.2) (Glucose kinase)|
          Length = 343

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 116 SWLPASGEDGHEDGGPCGERD 178
           +W+P  GE GH D GP  ERD
Sbjct: 161 AWVPVPGEGGHIDIGPRTERD 181

>GLK_BRUAB (Q59171) Glucokinase (EC 2.7.1.2) (Glucose kinase)|
          Length = 343

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 116 SWLPASGEDGHEDGGPCGERD 178
           +W+P  GE GH D GP  ERD
Sbjct: 161 AWVPVPGEGGHIDIGPRTERD 181

>IRX3_MOUSE (P81067) Iroquois-class homeodomain protein IRX-3 (Iroquois|
           homeobox protein 3) (Homeodomain protein IRXB1)
          Length = 507

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +2

Query: 116 SWLPASGEDGHEDGGPCG-ERDRGDEVRPQEDHRALLLPDVEQLRHGPDVHGGR--QRKL 286
           +W P S  D  E+G   G ER+  DE   +E+ +  L  + E+L      HGGR   R+ 
Sbjct: 195 TWAPRSRTD--EEGNAYGSEREEEDEEEDEEESKRELEMEEEELAGRGGGHGGRGAGRRR 252

Query: 287 QHQHVPVERI 316
           + + + +E +
Sbjct: 253 RDEEIDLENL 262

>ILVD_PYRFU (Q8U297) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 551

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = +3

Query: 135 ERMDMKTVDHVVSATAATR--YVHRKITEHSSCPTSNSCAMVPMFMAGGSANCNISTYR* 308
           E +D+KTV   V A  A +  Y   K+ E+ +CP   SCA   MF A  + N        
Sbjct: 153 EYVDVKTVFEAVGAVKAGKMSYEELKLLENFACPGCGSCA--GMFTA-NTMNALTEALGI 209

Query: 309 RGSW-GRNPTPCAARTTAMPITGI 377
              W G  P P A R      TG+
Sbjct: 210 SLPWNGTAPAPYAHRIRIAKETGM 233


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,176,214
Number of Sequences: 219361
Number of extensions: 1853541
Number of successful extensions: 5104
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5100
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)