ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31i08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463918.1| Oryza sativa (japonica cultivar-group), mRNA 54 5e-04
2ref|NM_197111.1| Oryza sativa (japonica cultivar-group) putative... 54 5e-04
3gb|AC146481.2| Oryza sativa chromosome 10 B1288B10 genomic sequ... 54 5e-04
4gb|AC090120.8| Oryza sativa chromosome 10 BAC OSJNBb0049A16 geno... 54 5e-04
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
7dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
8dbj|AK110925.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
9gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 54 5e-04
10gb|AC073486.5| Homo sapiens BAC clone RP11-807H17 from 7, comple... 46 0.13
11gb|AC122189.4| Mus musculus BAC clone RP23-36C8 from 1, complete... 42 2.1
12emb|AL513305.10| Human DNA sequence from clone RP11-415H9 on chr... 42 2.1
13gb|AE014823.1| Plasmodium falciparum 3D7 chromosome 14 section 8... 42 2.1
14emb|BX855617.8| Zebrafish DNA sequence from clone DKEYP-123H10 i... 42 2.1
15dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
16gb|AC009028.3|AC009028 Homo sapiens chromosome 16 clone RP11-131... 42 2.1
17dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
18dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
19gb|AY705699.1| Oikopleura dioica Irx-c gene, complete cds 42 2.1
20gb|AC121570.4| Mus musculus BAC clone RP23-228G6 from 16, comple... 40 8.2
21ref|XM_670285.1| Plasmodium berghei strain ANKA hypothetical pro... 40 8.2
22emb|AL353733.14| Human DNA sequence from clone RP11-143N16 on ch... 40 8.2
23gb|AC007580.6| Drosophila melanogaster, chromosome 2R, region 50... 40 8.2
24gb|AC008877.9| Homo sapiens chromosome 5 clone CTD-2204B21, comp... 40 8.2
25gb|AC034233.5| Homo sapiens chromosome 5 clone CTD-2251M10, comp... 40 8.2
26gb|AC016599.6| Homo sapiens chromosome 5 clone CTD-2054D19, comp... 40 8.2
27gb|AC010379.5|AC010379 Homo sapiens chromosome 5 clone CTD-2064M... 40 8.2
28gb|AC155268.1| Mus musculus BAC clone RP23-204K22 from 16, compl... 40 8.2
29emb|BX649398.4| Zebrafish DNA sequence from clone DKEY-202B22 in... 40 8.2
30gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37... 40 8.2 
>ref|XM_463918.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2037

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                       
Query: 136  tagtcctcaaggacggggagcttctgctcgttgtcgtagccatacatgacgcggaccat 194
            ||||| || ||||||||||||  | |||||  |||||||||||||||||||| ||||||
Sbjct: 1818 tagtcgtcgaggacggggagccgccgctcgccgtcgtagccatacatgacgccgaccat 1760
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>ref|NM_197111.1| Oryza sativa (japonica cultivar-group) putative monoterpene synthase
            (OSJNBb0049A16.6), mRNA
          Length = 1407

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                       
Query: 136  tagtcctcaaggacggggagcttctgctcgttgtcgtagccatacatgacgcggaccat 194
            |||||||| |||||||||||| ||||||||  ||||| ||| | |||||||| ||||||
Sbjct: 1385 tagtcctcgaggacggggagcctctgctcgccgtcgtggccgtgcatgacgccgaccat 1327



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 341  ggtacaactccttgtatgatccatc 365
            |||||||||||||||||||||||||
Sbjct: 1174 ggtacaactccttgtatgatccatc 1150
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>gb|AC146481.2| Oryza sativa chromosome 10  B1288B10 genomic sequence, complete
             sequence
          Length = 58734

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                        
Query: 136   tagtcctcaaggacggggagcttctgctcgttgtcgtagccatacatgacgcggaccat 194
             |||||||| |||||||||||| ||||||||  ||||| ||| | |||||||| ||||||
Sbjct: 29680 tagtcctcgaggacggggagcctctgctcgccgtcgtggccgtgcatgacgccgaccat 29738



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 341   ggtacaactccttgtatgatccatc 365
             |||||||||||||||||||||||||
Sbjct: 29891 ggtacaactccttgtatgatccatc 29915
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>gb|AC090120.8| Oryza sativa chromosome 10 BAC OSJNBb0049A16 genomic sequence,
            complete sequence
          Length = 129585

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                       
Query: 136  tagtcctcaaggacggggagcttctgctcgttgtcgtagccatacatgacgcggaccat 194
            |||||||| |||||||||||| ||||||||  ||||| ||| | |||||||| ||||||
Sbjct: 3486 tagtcctcgaggacggggagcctctgctcgccgtcgtggccgtgcatgacgccgaccat 3428



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 341  ggtacaactccttgtatgatccatc 365
            |||||||||||||||||||||||||
Sbjct: 3275 ggtacaactccttgtatgatccatc 3251
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                           
Query: 136      tagtcctcaaggacggggagcttctgctcgttgtcgtagccatacatgacgcggaccat 194
                |||||||| |||||||||||| ||||||||  ||||| ||| | |||||||| ||||||
Sbjct: 18057547 tagtcctcgaggacggggagcctctgctcgccgtcgtggccgtgcatgacgccgaccat 18057605



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                         
Query: 341      ggtacaactccttgtatgatccatc 365
                |||||||||||||||||||||||||
Sbjct: 18057758 ggtacaactccttgtatgatccatc 18057782
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                          
Query: 136     tagtcctcaaggacggggagcttctgctcgttgtcgtagccatacatgacgcggaccat 194
               ||||| || ||||||||||||  | |||||  |||||||||||||||||||| ||||||
Sbjct: 1150833 tagtcgtcgaggacggggagccgccgctcgccgtcgtagccatacatgacgccgaccat 1150775
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>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1020_C02
          Length = 124578

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                         
Query: 136    tagtcctcaaggacggggagcttctgctcgttgtcgtagccatacatgacgcggaccat 194
              ||||| || ||||||||||||  | |||||  |||||||||||||||||||| ||||||
Sbjct: 103357 tagtcgtcgaggacggggagccgccgctcgccgtcgtagccatacatgacgccgaccat 103299
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>dbj|AK110925.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D07, full
            insert sequence
          Length = 2037

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                       
Query: 136  tagtcctcaaggacggggagcttctgctcgttgtcgtagccatacatgacgcggaccat 194
            ||||| || ||||||||||||  | |||||  |||||||||||||||||||| ||||||
Sbjct: 1818 tagtcgtcgaggacggggagccgccgctcgccgtcgtagccatacatgacgccgaccat 1760
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                           
Query: 136      tagtcctcaaggacggggagcttctgctcgttgtcgtagccatacatgacgcggaccat 194
                |||||||| |||||||||||| ||||||||  ||||| ||| | |||||||| ||||||
Sbjct: 18066800 tagtcctcgaggacggggagcctctgctcgccgtcgtggccgtgcatgacgccgaccat 18066858



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                         
Query: 341      ggtacaactccttgtatgatccatc 365
                |||||||||||||||||||||||||
Sbjct: 18067011 ggtacaactccttgtatgatccatc 18067035
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>gb|AC073486.5| Homo sapiens BAC clone RP11-807H17 from 7, complete sequence
          Length = 162911

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 78     attttatatacaatattatatgataga 104
              ||||||||||||||||||||| |||||
Sbjct: 114643 attttatatacaatattatattataga 114617
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>gb|AC122189.4| Mus musculus BAC clone RP23-36C8 from 1, complete sequence
          Length = 247309

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 497    aaagatgcatgaataaaagtg 517
              |||||||||||||||||||||
Sbjct: 124182 aaagatgcatgaataaaagtg 124162
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>emb|AL513305.10| Human DNA sequence from clone RP11-415H9 on chromosome 1, complete
             sequence
          Length = 69529

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 113   tttagaagagcaacatctttg 133
             |||||||||||||||||||||
Sbjct: 17097 tttagaagagcaacatctttg 17077
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>gb|AE014823.1| Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete
             sequence
          Length = 249943

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Minus

                                              
Query: 80    tttatatacaatattatatgatagaatgcatga 112
             |||||||||| |||||||||| |||||||||||
Sbjct: 12997 tttatataca-tattatatgaaagaatgcatga 12966
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>emb|BX855617.8| Zebrafish DNA sequence from clone DKEYP-123H10 in linkage group 1,
             complete sequence
          Length = 160094

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 79    ttttatatacaatattatatg 99
             |||||||||||||||||||||
Sbjct: 95720 ttttatatacaatattatatg 95740
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 493    aagaaaagatgcatgaataaa 513
              |||||||||||||||||||||
Sbjct: 302541 aagaaaagatgcatgaataaa 302521
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>gb|AC009028.3|AC009028 Homo sapiens chromosome 16 clone RP11-131F3, complete sequence
          Length = 166271

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 78    attttatatacaatattatat 98
             |||||||||||||||||||||
Sbjct: 58093 attttatatacaatattatat 58113
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>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0005A05
          Length = 190834

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 493   aagaaaagatgcatgaataaa 513
             |||||||||||||||||||||
Sbjct: 54379 aagaaaagatgcatgaataaa 54359
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>dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0436E04
          Length = 144644

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 493    aagaaaagatgcatgaataaa 513
              |||||||||||||||||||||
Sbjct: 144211 aagaaaagatgcatgaataaa 144191
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>gb|AY705699.1| Oikopleura dioica Irx-c gene, complete cds
          Length = 2096

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 78  attttatatacaatattatat 98
           |||||||||||||||||||||
Sbjct: 295 attttatatacaatattatat 315
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>gb|AC121570.4| Mus musculus BAC clone RP23-228G6 from 16, complete sequence
          Length = 184174

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   atatacaatattatatgata 102
            ||||||||||||||||||||
Sbjct: 1785 atatacaatattatatgata 1804
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>ref|XM_670285.1| Plasmodium berghei strain ANKA hypothetical protein (PB000870.00.0)
            partial mRNA
          Length = 2529

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 83   atatacaatattatatgatagaat 106
            ||||||| ||||||||||||||||
Sbjct: 1104 atatacattattatatgatagaat 1081
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>emb|AL353733.14| Human DNA sequence from clone RP11-143N16 on chromosome 9, complete
             sequence
          Length = 95442

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    ttttatatacaatattatat 98
             ||||||||||||||||||||
Sbjct: 36286 ttttatatacaatattatat 36305
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>gb|AC007580.6| Drosophila melanogaster, chromosome 2R, region 50F-51C, BAC clone
             BACR07P02, complete sequence
          Length = 160920

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    ttttatatacaatattatat 98
             ||||||||||||||||||||
Sbjct: 88030 ttttatatacaatattatat 88011
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>gb|AC008877.9| Homo sapiens chromosome 5 clone CTD-2204B21, complete sequence
          Length = 163575

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    caaagtttagtgatgctgtg 219
              ||||||||||||||||||||
Sbjct: 123641 caaagtttagtgatgctgtg 123622
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>gb|AC034233.5| Homo sapiens chromosome 5 clone CTD-2251M10, complete sequence
          Length = 168963

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   caaagtttagtgatgctgtg 219
             ||||||||||||||||||||
Sbjct: 74323 caaagtttagtgatgctgtg 74304
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>gb|AC016599.6| Homo sapiens chromosome 5 clone CTD-2054D19, complete sequence
          Length = 173736

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   caaagtttagtgatgctgtg 219
             ||||||||||||||||||||
Sbjct: 80694 caaagtttagtgatgctgtg 80675
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>gb|AC010379.5|AC010379 Homo sapiens chromosome 5 clone CTD-2064M2, complete sequence
          Length = 90113

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   caaagtttagtgatgctgtg 219
             ||||||||||||||||||||
Sbjct: 41460 caaagtttagtgatgctgtg 41479
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>gb|AC155268.1| Mus musculus BAC clone RP23-204K22 from 16, complete sequence
          Length = 218381

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     atatacaatattatatgata 102
              ||||||||||||||||||||
Sbjct: 108612 atatacaatattatatgata 108631
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>emb|BX649398.4| Zebrafish DNA sequence from clone DKEY-202B22 in linkage group 4,
              complete sequence
          Length = 166156

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     tacaatattatatgatagaa 105
              ||||||||||||||||||||
Sbjct: 115955 tacaatattatatgatagaa 115974
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>gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37 of 73 of the complete
             sequence
          Length = 266851

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    ttttatatacaatattatat 98
             ||||||||||||||||||||
Sbjct: 58042 ttttatatacaatattatat 58023


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,040,227
Number of Sequences: 3902068
Number of extensions: 5040227
Number of successful extensions: 97558
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 97377
Number of HSP's gapped (non-prelim): 182
length of query: 599
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 576
effective length of database: 17,143,297,704
effective search space: 9874539477504
effective search space used: 9874539477504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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