ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31i02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY108250.1| Zea mays PCO096608 mRNA sequence 325 1e-85
2ref|XM_469322.1| Oryza sativa (japonica cultivar-group), mRNA 315 1e-82
3dbj|AK065067.1| Oryza sativa (japonica cultivar-group) cDNA clon... 315 1e-82
4dbj|AK062164.1| Oryza sativa (japonica cultivar-group) cDNA clon... 315 1e-82
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 127 5e-26
6gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 geno... 127 5e-26
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 127 5e-26
8gb|AC087851.4|AC087851 Oryza sativa chromosome 3 BAC OSJNBb0072E... 127 5e-26
9gb|AY325887.1| Mus musculus highwire (Phr1) mRNA, complete cds 48 0.036
10gb|AE014175.1| Mus musculus piebald deletion region section 3 of... 48 0.036
11gb|AC114410.9| Mus musculus chromosome 14, clone RP23-151K8, com... 48 0.036
12ref|NM_207215.1| Mus musculus pam, highwire, rpm 1 (Phr1), mRNA 48 0.036
13ref|NM_120779.2| Arabidopsis thaliana unknown protein AT5G06970 ... 44 0.56
14gb|AC162448.10| Mus musculus chromosome 1, clone RP24-405F23, co... 44 0.56
15gb|AC115297.7| Mus musculus BAC clone RP23-205H11 from chromosom... 44 0.56
16gb|AC161426.5| Mus musculus BAC clone RP23-69L13 from chromosome... 44 0.56
17gb|AY090450.1| Arabidopsis thaliana AT5g06970/MOJ9_14 mRNA, comp... 44 0.56
18gb|AC115952.11| Mus musculus chromosome 1, clone RP24-573K10, co... 44 0.56
19emb|BX831645.1|CNS09YVF Arabidopsis thaliana Full-length cDNA Co... 44 0.56
20gb|BT002724.1| Arabidopsis thaliana At5g06970/MOJ9_14 gene, comp... 44 0.56
21dbj|AB010697.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.56
22ref|XM_534151.2| PREDICTED: Canis familiaris similar to pam, hig... 42 2.2
23ref|XM_852853.1| PREDICTED: Canis familiaris similar to pam, hig... 42 2.2
24emb|BX510329.14| Zebrafish DNA sequence from clone RP71-67M5 in ... 42 2.2
25dbj|AB218917.1| Octopus vulgaris ov-tm mRNA for tropomyosin, com... 42 2.2
26dbj|AB218915.1| Todarodes pacificus tp-tm mRNA for tropomyosin, ... 42 2.2
27gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 42 2.2
28emb|AL670860.6| Mouse DNA sequence from clone RP23-50K11 on chro... 42 2.2
29emb|AL133445.4|CNS01DV1 Human chromosome 14 DNA sequence BAC R-1... 42 2.2
30gb|AC148094.1| Mus musculus chromosome UNK clone RP24-497G1, com... 40 8.8
31gb|AC004891.1| Homo sapiens PAC clone RP4-800L12 from 7, complet... 40 8.8
32gb|AC124518.4| Mus musculus BAC clone RP23-392E7 from chromosome... 40 8.8
33gb|AC095022.4| Sus scrofa clone RP44-374C1, complete sequence 40 8.8
34gb|AC142340.1| Pan troglodytes BAC clone RP43-43B11 from 7, comp... 40 8.8
35emb|AJ011979.1|PHY011979 Petunia hybrida partial RdRP gene 40 8.8
36emb|AL390844.12| Human DNA sequence from clone RP11-255N24 on ch... 40 8.8
37emb|AJ851763.1| Gallus gallus mRNA for hypothetical protein, clo... 40 8.8
38emb|AL844600.3| Mouse DNA sequence from clone RP24-92D2 on chrom... 40 8.8
39gb|AC090588.5| Homo sapiens chromosome 11, clone RP11-384E5, com... 40 8.8
40emb|BX649522.15| Zebrafish DNA sequence from clone DKEY-40I22 in... 40 8.8
41gb|AC154503.3| Mus musculus BAC clone RP24-89J21 from chromosome... 40 8.8
42gb|AC154725.3| Mus musculus BAC clone RP23-125L8 from chromosome... 40 8.8
43dbj|AK080053.1| Mus musculus adult male aorta and vein cDNA, RIK... 40 8.8
44dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
45gb|AF547140.1| Plasmodium falciparum Gb55 erythrocyte membrane p... 40 8.8
46gb|AC141633.4| Mus musculus BAC clone RP24-155I4 from chromosome... 40 8.8
47dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
48gb|AC174383.3| Mus musculus BAC clone RP23-244A20 from chromosom... 40 8.8
49emb|BX000344.15| Mouse DNA sequence from clone RP24-88L6 on chro... 40 8.8
50emb|AL591866.13| Human DNA sequence from clone RP11-58A11 on chr... 40 8.8
51emb|AL772167.13| Mouse DNA sequence from clone RP23-203A12 on ch... 40 8.8
52emb|AL662809.14| Mouse DNA sequence from clone RP23-441I8 on chr... 40 8.8 
>gb|AY108250.1| Zea mays PCO096608 mRNA sequence
          Length = 513

 Score =  325 bits (164), Expect = 1e-85
 Identities = 278/316 (87%)
 Strand = Plus / Minus

                                                                       
Query: 328 ggagctgaactgggtatcttgaaatgcttctttacatagtgtgatgcctctgaatcattt 387
           |||||||| |||||||||||||| |||||||| || || |||||||||||||||||||||
Sbjct: 394 ggagctgagctgggtatcttgaattgcttcttcacgtaatgtgatgcctctgaatcattt 335

                                                                       
Query: 388 ctgtggcacaggaccctcagcagggttttggagtcgcttccgaatttgcttttgcctcct 447
           ||||| ||||||||||| || ||||||||||||||   ||| |||||||| ||||| |||
Sbjct: 334 ctgtgacacaggaccctaaggagggttttggagtccgctccaaatttgctcttgccacct 275

                                                                       
Query: 448 tgagtaacttcgcgcagatcatcaataagcacacgggtctcttgcttgatcagatttatt 507
           ||||||||||| || || |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 274 tgagtaacttctcgtaggtcatcaatgagcacgcgggtctcttgcttgatcagatttatt 215

                                                                       
Query: 508 acaggacgaacacgcgagaccaaattctcaacagttccacgaggcagcccatctccgcca 567
           |||||||| ||||||||||| || || |||||||||||||||||||| |||||||| |||
Sbjct: 214 acaggacgtacacgcgagactaagttttcaacagttccacgaggcagtccatctccacca 155

                                                                       
Query: 568 gatatgaagaattccttaagaatttcaagatcttcctccaaaagaggggcatcatttgga 627
           || |  || |||||||| ||  ||||||||||||||||||| | ||  ||||||||||||
Sbjct: 154 gaaacaaaaaattccttcagggtttcaagatcttcctccaataaagctgcatcatttgga 95

                           
Query: 628 gagaagatgcgtgtag 643
           |||||||  |||||||
Sbjct: 94  gagaagacacgtgtag 79
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>ref|XM_469322.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3593

 Score =  315 bits (159), Expect = 1e-82
 Identities = 270/307 (87%)
 Strand = Plus / Minus

                                                                        
Query: 328  ggagctgaactgggtatcttgaaatgcttctttacatagtgtgatgcctctgaatcattt 387
            |||||||| ||||| |||||||| |||||||| |||||||| || ||||| |||||||||
Sbjct: 3227 ggagctgagctgggaatcttgaattgcttcttcacatagtgcgaagcctccgaatcattt 3168

                                                                        
Query: 388  ctgtggcacaggaccctcagcagggttttggagtcgcttccgaatttgcttttgcctcct 447
            |||||||| |||||||| |||||||||||||| ||| |||| || || |||||  | || 
Sbjct: 3167 ctgtggcaaaggaccctaagcagggttttggaatcggttccaaacttacttttagcgccc 3108

                                                                        
Query: 448  tgagtaacttcgcgcagatcatcaataagcacacgggtctcttgcttgatcagatttatt 507
            ||||||||||| || || ||||| || |||||||| ||||||||||||||||||| ||||
Sbjct: 3107 tgagtaacttctcgtaggtcatcgatgagcacacgtgtctcttgcttgatcagatctatt 3048

                                                                        
Query: 508  acaggacgaacacgcgagaccaaattctcaacagttccacgaggcagcccatctccgcca 567
            ||||| |||||||| |||||||||||||| |||||||||||||| || |||||||| |||
Sbjct: 3047 acagggcgaacacgtgagaccaaattctcgacagttccacgaggtaggccatctccacca 2988

                                                                        
Query: 568  gatatgaagaattccttaagaatttcaagatcttcctccaaaagaggggcatcatttgga 627
            ||||| || |||||||| ||||||||||||||||| |||||||||| ||||||| |||||
Sbjct: 2987 gatataaaaaattccttcagaatttcaagatcttcttccaaaagagtggcatcacttgga 2928

                   
Query: 628  gagaaga 634
            |||||||
Sbjct: 2927 gagaaga 2921



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 190  cctagctcctactgctaataatgcacaa 217
            |||||||||||||| ||||||| |||||
Sbjct: 3381 cctagctcctactgttaataatacacaa 3354
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>dbj|AK065067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J22, full
            insert sequence
          Length = 3932

 Score =  315 bits (159), Expect = 1e-82
 Identities = 270/307 (87%)
 Strand = Plus / Minus

                                                                        
Query: 328  ggagctgaactgggtatcttgaaatgcttctttacatagtgtgatgcctctgaatcattt 387
            |||||||| ||||| |||||||| |||||||| |||||||| || ||||| |||||||||
Sbjct: 3566 ggagctgagctgggaatcttgaattgcttcttcacatagtgcgaagcctccgaatcattt 3507

                                                                        
Query: 388  ctgtggcacaggaccctcagcagggttttggagtcgcttccgaatttgcttttgcctcct 447
            |||||||| |||||||| |||||||||||||| ||| |||| || || |||||  | || 
Sbjct: 3506 ctgtggcaaaggaccctaagcagggttttggaatcggttccaaacttacttttagcgccc 3447

                                                                        
Query: 448  tgagtaacttcgcgcagatcatcaataagcacacgggtctcttgcttgatcagatttatt 507
            ||||||||||| || || ||||| || |||||||| ||||||||||||||||||| ||||
Sbjct: 3446 tgagtaacttctcgtaggtcatcgatgagcacacgtgtctcttgcttgatcagatctatt 3387

                                                                        
Query: 508  acaggacgaacacgcgagaccaaattctcaacagttccacgaggcagcccatctccgcca 567
            ||||| |||||||| |||||||||||||| |||||||||||||| || |||||||| |||
Sbjct: 3386 acagggcgaacacgtgagaccaaattctcgacagttccacgaggtaggccatctccacca 3327

                                                                        
Query: 568  gatatgaagaattccttaagaatttcaagatcttcctccaaaagaggggcatcatttgga 627
            ||||| || |||||||| ||||||||||||||||| |||||||||| ||||||| |||||
Sbjct: 3326 gatataaaaaattccttcagaatttcaagatcttcttccaaaagagtggcatcacttgga 3267

                   
Query: 628  gagaaga 634
            |||||||
Sbjct: 3266 gagaaga 3260



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 190  cctagctcctactgctaataatgcacaa 217
            |||||||||||||| ||||||| |||||
Sbjct: 3720 cctagctcctactgttaataatacacaa 3693
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>dbj|AK062164.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B05, full
           insert sequence
          Length = 1175

 Score =  315 bits (159), Expect = 1e-82
 Identities = 270/307 (87%)
 Strand = Plus / Minus

                                                                       
Query: 328 ggagctgaactgggtatcttgaaatgcttctttacatagtgtgatgcctctgaatcattt 387
           |||||||| ||||| |||||||| |||||||| |||||||| || ||||| |||||||||
Sbjct: 773 ggagctgagctgggaatcttgaattgcttcttcacatagtgcgaagcctccgaatcattt 714

                                                                       
Query: 388 ctgtggcacaggaccctcagcagggttttggagtcgcttccgaatttgcttttgcctcct 447
           |||||||| |||||||| |||||||||||||| ||| |||| || || |||||  | || 
Sbjct: 713 ctgtggcaaaggaccctaagcagggttttggaatcggttccaaacttacttttagcgccc 654

                                                                       
Query: 448 tgagtaacttcgcgcagatcatcaataagcacacgggtctcttgcttgatcagatttatt 507
           ||||||||||| || || ||||| || |||||||| ||||||||||||||||||| ||||
Sbjct: 653 tgagtaacttctcgtaggtcatcgatgagcacacgtgtctcttgcttgatcagatctatt 594

                                                                       
Query: 508 acaggacgaacacgcgagaccaaattctcaacagttccacgaggcagcccatctccgcca 567
           ||||| |||||||| |||||||||||||| |||||||||||||| || |||||||| |||
Sbjct: 593 acagggcgaacacgtgagaccaaattctcgacagttccacgaggtaggccatctccacca 534

                                                                       
Query: 568 gatatgaagaattccttaagaatttcaagatcttcctccaaaagaggggcatcatttgga 627
           ||||| || |||||||| ||||||||||||||||| |||||||||| ||||||| |||||
Sbjct: 533 gatataaaaaattccttcagaatttcaagatcttcttccaaaagagtggcatcacttgga 474

                  
Query: 628 gagaaga 634
           |||||||
Sbjct: 473 gagaaga 467



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 190 cctagctcctactgctaataatgcacaa 217
           |||||||||||||| ||||||| |||||
Sbjct: 927 cctagctcctactgttaataatacacaa 900
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  127 bits (64), Expect = 5e-26
 Identities = 136/160 (85%)
 Strand = Plus / Minus

                                                                            
Query: 328      ggagctgaactgggtatcttgaaatgcttctttacatagtgtgatgcctctgaatcattt 387
                |||||||| ||||| |||||||| |||||||| |||||||| || ||||| |||||||||
Sbjct: 26959206 ggagctgagctgggaatcttgaattgcttcttcacatagtgcgaagcctccgaatcattt 26959147

                                                                            
Query: 388      ctgtggcacaggaccctcagcagggttttggagtcgcttccgaatttgcttttgcctcct 447
                |||||||| |||||||| |||||||||||||| ||| |||| || || |||||  | || 
Sbjct: 26959146 ctgtggcaaaggaccctaagcagggttttggaatcggttccaaacttacttttagcgccc 26959087

                                                        
Query: 448      tgagtaacttcgcgcagatcatcaataagcacacgggtct 487
                ||||||||||| || || ||||| || |||||||| ||||
Sbjct: 26959086 tgagtaacttctcgtaggtcatcgatgagcacacgtgtct 26959047



 Score =  123 bits (62), Expect = 8e-25
 Identities = 89/98 (90%)
 Strand = Plus / Minus

                                                                            
Query: 486      ctcttgcttgatcagatttattacaggacgaacacgcgagaccaaattctcaacagttcc 545
                ||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||||||||
Sbjct: 26957399 ctcttgcttgatcagatctattacagggcgaacacgtgagaccaaattctcgacagttcc 26957340

                                                      
Query: 546      acgaggcagcccatctccgccagatatgaagaattcct 583
                |||||| || |||||||| |||||||| || |||||||
Sbjct: 26957339 acgaggtaggccatctccaccagatataaaaaattcct 26957302



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                      
Query: 581      ccttaagaatttcaagatcttcctccaaaagaggggcatcatttggagagaaga 634
                |||| ||||||||||||||||| |||||||||| ||||||| ||||||||||||
Sbjct: 26957130 ccttcagaatttcaagatcttcttccaaaagagtggcatcacttggagagaaga 26957077



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 190      cctagctcctactgctaataatgcacaa 217
                |||||||||||||| ||||||| |||||
Sbjct: 26959360 cctagctcctactgttaataatacacaa 26959333
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>gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 genomic sequence, complete
              sequence
          Length = 149303

 Score =  127 bits (64), Expect = 5e-26
 Identities = 136/160 (85%)
 Strand = Plus / Minus

                                                                          
Query: 328    ggagctgaactgggtatcttgaaatgcttctttacatagtgtgatgcctctgaatcattt 387
              |||||||| ||||| |||||||| |||||||| |||||||| || ||||| |||||||||
Sbjct: 138206 ggagctgagctgggaatcttgaattgcttcttcacatagtgcgaagcctccgaatcattt 138147

                                                                          
Query: 388    ctgtggcacaggaccctcagcagggttttggagtcgcttccgaatttgcttttgcctcct 447
              |||||||| |||||||| |||||||||||||| ||| |||| || || |||||  | || 
Sbjct: 138146 ctgtggcaaaggaccctaagcagggttttggaatcggttccaaacttacttttagcgccc 138087

                                                      
Query: 448    tgagtaacttcgcgcagatcatcaataagcacacgggtct 487
              ||||||||||| || || ||||| || |||||||| ||||
Sbjct: 138086 tgagtaacttctcgtaggtcatcgatgagcacacgtgtct 138047



 Score =  123 bits (62), Expect = 8e-25
 Identities = 89/98 (90%)
 Strand = Plus / Minus

                                                                          
Query: 486    ctcttgcttgatcagatttattacaggacgaacacgcgagaccaaattctcaacagttcc 545
              ||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||||||||
Sbjct: 136399 ctcttgcttgatcagatctattacagggcgaacacgtgagaccaaattctcgacagttcc 136340

                                                    
Query: 546    acgaggcagcccatctccgccagatatgaagaattcct 583
              |||||| || |||||||| |||||||| || |||||||
Sbjct: 136339 acgaggtaggccatctccaccagatataaaaaattcct 136302



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                    
Query: 581    ccttaagaatttcaagatcttcctccaaaagaggggcatcatttggagagaaga 634
              |||| ||||||||||||||||| |||||||||| ||||||| ||||||||||||
Sbjct: 136130 ccttcagaatttcaagatcttcttccaaaagagtggcatcacttggagagaaga 136077



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 190    cctagctcctactgctaataatgcacaa 217
              |||||||||||||| ||||||| |||||
Sbjct: 138360 cctagctcctactgttaataatacacaa 138333
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  127 bits (64), Expect = 5e-26
 Identities = 136/160 (85%)
 Strand = Plus / Minus

                                                                            
Query: 328      ggagctgaactgggtatcttgaaatgcttctttacatagtgtgatgcctctgaatcattt 387
                |||||||| ||||| |||||||| |||||||| |||||||| || ||||| |||||||||
Sbjct: 27050529 ggagctgagctgggaatcttgaattgcttcttcacatagtgcgaagcctccgaatcattt 27050470

                                                                            
Query: 388      ctgtggcacaggaccctcagcagggttttggagtcgcttccgaatttgcttttgcctcct 447
                |||||||| |||||||| |||||||||||||| ||| |||| || || |||||  | || 
Sbjct: 27050469 ctgtggcaaaggaccctaagcagggttttggaatcggttccaaacttacttttagcgccc 27050410

                                                        
Query: 448      tgagtaacttcgcgcagatcatcaataagcacacgggtct 487
                ||||||||||| || || ||||| || |||||||| ||||
Sbjct: 27050409 tgagtaacttctcgtaggtcatcgatgagcacacgtgtct 27050370



 Score =  123 bits (62), Expect = 8e-25
 Identities = 89/98 (90%)
 Strand = Plus / Minus

                                                                            
Query: 486      ctcttgcttgatcagatttattacaggacgaacacgcgagaccaaattctcaacagttcc 545
                ||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||||||||
Sbjct: 27048722 ctcttgcttgatcagatctattacagggcgaacacgtgagaccaaattctcgacagttcc 27048663

                                                      
Query: 546      acgaggcagcccatctccgccagatatgaagaattcct 583
                |||||| || |||||||| |||||||| || |||||||
Sbjct: 27048662 acgaggtaggccatctccaccagatataaaaaattcct 27048625



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                      
Query: 581      ccttaagaatttcaagatcttcctccaaaagaggggcatcatttggagagaaga 634
                |||| ||||||||||||||||| |||||||||| ||||||| ||||||||||||
Sbjct: 27048453 ccttcagaatttcaagatcttcttccaaaagagtggcatcacttggagagaaga 27048400



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 190      cctagctcctactgctaataatgcacaa 217
                |||||||||||||| ||||||| |||||
Sbjct: 27050683 cctagctcctactgttaataatacacaa 27050656
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>gb|AC087851.4|AC087851 Oryza sativa chromosome 3 BAC OSJNBb0072E24 genomic sequence, complete
              sequence
          Length = 111882

 Score =  127 bits (64), Expect = 5e-26
 Identities = 136/160 (85%)
 Strand = Plus / Plus

                                                                          
Query: 328    ggagctgaactgggtatcttgaaatgcttctttacatagtgtgatgcctctgaatcattt 387
              |||||||| ||||| |||||||| |||||||| |||||||| || ||||| |||||||||
Sbjct: 100193 ggagctgagctgggaatcttgaattgcttcttcacatagtgcgaagcctccgaatcattt 100252

                                                                          
Query: 388    ctgtggcacaggaccctcagcagggttttggagtcgcttccgaatttgcttttgcctcct 447
              |||||||| |||||||| |||||||||||||| ||| |||| || || |||||  | || 
Sbjct: 100253 ctgtggcaaaggaccctaagcagggttttggaatcggttccaaacttacttttagcgccc 100312

                                                      
Query: 448    tgagtaacttcgcgcagatcatcaataagcacacgggtct 487
              ||||||||||| || || ||||| || |||||||| ||||
Sbjct: 100313 tgagtaacttctcgtaggtcatcgatgagcacacgtgtct 100352



 Score =  123 bits (62), Expect = 8e-25
 Identities = 89/98 (90%)
 Strand = Plus / Plus

                                                                          
Query: 486    ctcttgcttgatcagatttattacaggacgaacacgcgagaccaaattctcaacagttcc 545
              ||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||||||||
Sbjct: 102000 ctcttgcttgatcagatctattacagggcgaacacgtgagaccaaattctcgacagttcc 102059

                                                    
Query: 546    acgaggcagcccatctccgccagatatgaagaattcct 583
              |||||| || |||||||| |||||||| || |||||||
Sbjct: 102060 acgaggtaggccatctccaccagatataaaaaattcct 102097



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                    
Query: 581    ccttaagaatttcaagatcttcctccaaaagaggggcatcatttggagagaaga 634
              |||| ||||||||||||||||| |||||||||| ||||||| ||||||||||||
Sbjct: 102269 ccttcagaatttcaagatcttcttccaaaagagtggcatcacttggagagaaga 102322



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 190    cctagctcctactgctaataatgcacaa 217
              |||||||||||||| ||||||| |||||
Sbjct: 100039 cctagctcctactgttaataatacacaa 100066
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>gb|AY325887.1| Mus musculus highwire (Phr1) mRNA, complete cds
          Length = 14498

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 585  aagaatttcaagatcttcctccaa 608
            ||||||||||||||||||||||||
Sbjct: 6501 aagaatttcaagatcttcctccaa 6478
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>gb|AE014175.1| Mus musculus piebald deletion region section 3 of 11 of the complete
              sequence
          Length = 404829

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 585    aagaatttcaagatcttcctccaa 608
              ||||||||||||||||||||||||
Sbjct: 191153 aagaatttcaagatcttcctccaa 191176
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>gb|AC114410.9| Mus musculus chromosome 14, clone RP23-151K8, complete sequence
          Length = 201783

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 585   aagaatttcaagatcttcctccaa 608
             ||||||||||||||||||||||||
Sbjct: 63085 aagaatttcaagatcttcctccaa 63108
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>ref|NM_207215.1| Mus musculus pam, highwire, rpm 1 (Phr1), mRNA
          Length = 14498

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 585  aagaatttcaagatcttcctccaa 608
            ||||||||||||||||||||||||
Sbjct: 6501 aagaatttcaagatcttcctccaa 6478
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>ref|NM_120779.2| Arabidopsis thaliana unknown protein AT5G06970 mRNA, complete cds
          Length = 3781

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 370  gatgcctctgaatcatttctgtggca 395
            |||||||||||||| |||||||||||
Sbjct: 3532 gatgcctctgaatcgtttctgtggca 3507
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>gb|AC162448.10| Mus musculus chromosome 1, clone RP24-405F23, complete sequence
          Length = 180366

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 583    ttaagaatttcaagatcttcct 604
              ||||||||||||||||||||||
Sbjct: 148813 ttaagaatttcaagatcttcct 148792
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>gb|AC115297.7| Mus musculus BAC clone RP23-205H11 from chromosome 10, complete
             sequence
          Length = 171350

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 146   atcaatcaatacaatgcccatg 167
             ||||||||||||||||||||||
Sbjct: 25065 atcaatcaatacaatgcccatg 25086
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>gb|AC161426.5| Mus musculus BAC clone RP23-69L13 from chromosome 10, complete sequence
          Length = 255667

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 146    atcaatcaatacaatgcccatg 167
              ||||||||||||||||||||||
Sbjct: 214241 atcaatcaatacaatgcccatg 214262
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>gb|AY090450.1| Arabidopsis thaliana AT5g06970/MOJ9_14 mRNA, complete cds
          Length = 3781

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 370  gatgcctctgaatcatttctgtggca 395
            |||||||||||||| |||||||||||
Sbjct: 3532 gatgcctctgaatcgtttctgtggca 3507
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>gb|AC115952.11| Mus musculus chromosome 1, clone RP24-573K10, complete sequence
          Length = 182780

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 583   ttaagaatttcaagatcttcct 604
             ||||||||||||||||||||||
Sbjct: 23699 ttaagaatttcaagatcttcct 23678
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>emb|BX831645.1|CNS09YVF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH20ZF07 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 3699

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 370  gatgcctctgaatcatttctgtggca 395
            |||||||||||||| |||||||||||
Sbjct: 3462 gatgcctctgaatcgtttctgtggca 3437
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>gb|BT002724.1| Arabidopsis thaliana At5g06970/MOJ9_14 gene, complete cds
          Length = 3306

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 370  gatgcctctgaatcatttctgtggca 395
            |||||||||||||| |||||||||||
Sbjct: 3260 gatgcctctgaatcgtttctgtggca 3235
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>dbj|AB010697.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOJ9
          Length = 86380

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 370   gatgcctctgaatcatttctgtggca 395
             |||||||||||||| |||||||||||
Sbjct: 37453 gatgcctctgaatcgtttctgtggca 37478
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>ref|XM_534151.2| PREDICTED: Canis familiaris similar to pam, highwire, rpm 1,
            transcript variant 1 (LOC476952), mRNA
          Length = 14858

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 585  aagaatttcaagatcttcctc 605
            |||||||||||||||||||||
Sbjct: 6465 aagaatttcaagatcttcctc 6445
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>ref|XM_852853.1| PREDICTED: Canis familiaris similar to pam, highwire, rpm 1,
            transcript variant 2 (LOC476952), mRNA
          Length = 14639

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 585  aagaatttcaagatcttcctc 605
            |||||||||||||||||||||
Sbjct: 6465 aagaatttcaagatcttcctc 6445
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>emb|BX510329.14| Zebrafish DNA sequence from clone RP71-67M5 in linkage group 7,
            complete sequence
          Length = 101941

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 355  ttctttacatagtgtgatgcc 375
            |||||||||||||||||||||
Sbjct: 7831 ttctttacatagtgtgatgcc 7851
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>dbj|AB218917.1| Octopus vulgaris ov-tm mRNA for tropomyosin, complete cds
          Length = 1172

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 591 ttcaagatcttcctccaaaag 611
           |||||||||||||||||||||
Sbjct: 401 ttcaagatcttcctccaaaag 381
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>dbj|AB218915.1| Todarodes pacificus tp-tm mRNA for tropomyosin, complete cds
          Length = 1271

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 591 ttcaagatcttcctccaaaag 611
           |||||||||||||||||||||
Sbjct: 489 ttcaagatcttcctccaaaag 469
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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 556     ccatctccgccagatatgaag 576
               |||||||||||||||||||||
Sbjct: 1224498 ccatctccgccagatatgaag 1224518
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>emb|AL670860.6| Mouse DNA sequence from clone RP23-50K11 on chromosome 2, complete
             sequence
          Length = 83914

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 333   tgaactgggtatcttgaaatg 353
             |||||||||||||||||||||
Sbjct: 63964 tgaactgggtatcttgaaatg 63984
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>emb|AL133445.4|CNS01DV1 Human chromosome 14 DNA sequence BAC R-1046B16 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 190946

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 144    caatcaatcaatacaatgccc 164
              |||||||||||||||||||||
Sbjct: 118364 caatcaatcaatacaatgccc 118344
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>gb|AC148094.1| Mus musculus chromosome UNK clone RP24-497G1, complete sequence
          Length = 164650

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 279   cttcgaggcgtttccagattttct 302
             |||||||||||||||||| |||||
Sbjct: 12909 cttcgaggcgtttccagactttct 12932
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>gb|AC004891.1| Homo sapiens PAC clone RP4-800L12 from 7, complete sequence
          Length = 112621

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   aagacatctaaatatttcct 134
             ||||||||||||||||||||
Sbjct: 19848 aagacatctaaatatttcct 19829
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>gb|AC124518.4| Mus musculus BAC clone RP23-392E7 from chromosome 18, complete sequence
          Length = 222376

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 279    cttcgaggcgtttccagattttct 302
              |||||||||||||||||| |||||
Sbjct: 215214 cttcgaggcgtttccagactttct 215237
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>gb|AC095022.4| Sus scrofa clone RP44-374C1, complete sequence
          Length = 61497

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 391   tggcacaggaccctcagcag 410
             ||||||||||||||||||||
Sbjct: 49078 tggcacaggaccctcagcag 49097
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>gb|AC142340.1| Pan troglodytes BAC clone RP43-43B11 from 7, complete sequence
          Length = 173662

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    aagacatctaaatatttcct 134
              ||||||||||||||||||||
Sbjct: 121026 aagacatctaaatatttcct 121007
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>emb|AJ011979.1|PHY011979 Petunia hybrida partial RdRP gene
          Length = 4579

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 259  gttccatccattatatgtac 278
            ||||||||||||||||||||
Sbjct: 3702 gttccatccattatatgtac 3721
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>emb|AL390844.12| Human DNA sequence from clone RP11-255N24 on chromosome 9p13.3-21.3
             Contains a CMT1A duplicated region transcript 15 (CDRT15)
             pseudogene, a pseudogene similar to part of solute carrier
             family 4 (anion exchanger), member 1, adaptor protein
             (SLC4A1AP), a novel pseudogene and a RNA binding motif
             protein, X chromosome (RBMX) (HNRPG) pseudogene, complete
             sequence
          Length = 163677

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 359   ttacatagtgtgatgcctct 378
             ||||||||||||||||||||
Sbjct: 57060 ttacatagtgtgatgcctct 57079
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>emb|AJ851763.1| Gallus gallus mRNA for hypothetical protein, clone 28g11
          Length = 1758

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 ggtatcttgaaatgcttctt 359
           ||||||||||||||||||||
Sbjct: 575 ggtatcttgaaatgcttctt 594
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>emb|AL844600.3| Mouse DNA sequence from clone RP24-92D2 on chromosome 4, complete
              sequence
          Length = 149318

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 575    agaattccttaagaatttcaagat 598
              |||||| |||||||||||||||||
Sbjct: 110381 agaatttcttaagaatttcaagat 110358
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>gb|AC090588.5| Homo sapiens chromosome 11, clone RP11-384E5, complete sequence
          Length = 152572

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   caatcaatcaatacaatgcc 163
             ||||||||||||||||||||
Sbjct: 50822 caatcaatcaatacaatgcc 50803
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>emb|BX649522.15| Zebrafish DNA sequence from clone DKEY-40I22 in linkage group 2, complete
              sequence
          Length = 155396

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     cagctaaaaactccccaaag 104
              ||||||||||||||||||||
Sbjct: 125537 cagctaaaaactccccaaag 125518
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>gb|AC154503.3| Mus musculus BAC clone RP24-89J21 from chromosome 13, complete sequence
          Length = 176432

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   tatttcctgggtagaagcaa 146
             ||||||||||||||||||||
Sbjct: 82496 tatttcctgggtagaagcaa 82515
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>gb|AC154725.3| Mus musculus BAC clone RP23-125L8 from chromosome 13, complete sequence
          Length = 204262

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   tatttcctgggtagaagcaa 146
             ||||||||||||||||||||
Sbjct: 10513 tatttcctgggtagaagcaa 10532
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>dbj|AK080053.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530053H09
            product:unclassifiable, full insert sequence
          Length = 3202

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 433  ttgcttttgcctccttgagt 452
            ||||||||||||||||||||
Sbjct: 1002 ttgcttttgcctccttgagt 1021
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 431      atttgcttttgcctccttga 450
                ||||||||||||||||||||
Sbjct: 23608476 atttgcttttgcctccttga 23608495
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>gb|AF547140.1| Plasmodium falciparum Gb55 erythrocyte membrane protein 1 Gb55var1
           gene, partial cds
          Length = 522

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 296 attttcttttccccgaaaat 315
           ||||||||||||||||||||
Sbjct: 296 attttcttttccccgaaaat 315
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>gb|AC141633.4| Mus musculus BAC clone RP24-155I4 from chromosome 18, complete sequence
          Length = 163886

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 279    cttcgaggcgtttccagattttct 302
              |||||||||||||||||| |||||
Sbjct: 137396 cttcgaggcgtttccagactttct 137373
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>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1669_F01
          Length = 140019

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   atttgcttttgcctccttga 450
             ||||||||||||||||||||
Sbjct: 49576 atttgcttttgcctccttga 49595
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>gb|AC174383.3| Mus musculus BAC clone RP23-244A20 from chromosome 18, complete
             sequence
          Length = 216950

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    aaaaactccccaaagcaaca 109
             ||||||||||||||||||||
Sbjct: 30397 aaaaactccccaaagcaaca 30416
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>emb|BX000344.15| Mouse DNA sequence from clone RP24-88L6 on chromosome 2, complete
              sequence
          Length = 118767

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     aaaactccccaaagcaacaa 110
              ||||||||||||||||||||
Sbjct: 103855 aaaactccccaaagcaacaa 103836
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>emb|AL591866.13| Human DNA sequence from clone RP11-58A11 on chromosome 1 Contains the
             5' end of two variants of the gene for a novel PH
             domain-containing protein, the gene for a novel protein, a
             ribosomal protein L34 (RPL34) pseudogene, the TAS1R1 gene
             for taste receptor type 1 member 1, the HKR3 gene for
             GLI-Kruppel family member HKR3, the gene for a novel
             protein (KIAA0469), the 3' end of the PHF13 gene for PHD
             finger protein 13 and one CpG island, complete sequence
          Length = 102539

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    ccatcaaaatccagctaaaa 93
             ||||||||||||||||||||
Sbjct: 64103 ccatcaaaatccagctaaaa 64084
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>emb|AL772167.13| Mouse DNA sequence from clone RP23-203A12 on chromosome 4, complete
              sequence
          Length = 205104

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 230    acacttcctaggttgcaaga 249
              ||||||||||||||||||||
Sbjct: 117400 acacttcctaggttgcaaga 117419
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>emb|AL662809.14| Mouse DNA sequence from clone RP23-441I8 on chromosome 11, complete
             sequence
          Length = 103129

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 433   ttgcttttgcctccttgagt 452
             ||||||||||||||||||||
Sbjct: 52419 ttgcttttgcctccttgagt 52400


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,215,285
Number of Sequences: 3902068
Number of extensions: 6215285
Number of successful extensions: 130537
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 130330
Number of HSP's gapped (non-prelim): 207
length of query: 645
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 622
effective length of database: 17,143,297,704
effective search space: 10663131171888
effective search space used: 10663131171888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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