| Clone Name | rbags31h22 |
|---|---|
| Clone Library Name | barley_pub |
>Y5712_ARATH (O04658) Hypothetical protein At5g27120| Length = 439 Score = 89.7 bits (221), Expect = 8e-18 Identities = 45/65 (69%), Positives = 53/65 (81%), Gaps = 1/65 (1%) Frame = -1 Query: 717 RYDALGDGEHNSLGVESRLKLETWLRVLEGKELGRSAGSTKGKPKIEVYEKDRKNGP-GL 541 R DALGD + N++GVE+RLKLE LR LEGK+LGR +GS KGKPKIEVY+KD+K G GL Sbjct: 369 RCDALGDSQDNTMGVENRLKLEARLRTLEGKDLGRLSGSAKGKPKIEVYDKDKKKGSGGL 428 Query: 540 IAPAK 526 I PAK Sbjct: 429 ITPAK 433
>NOP5_RAT (Q9QZ86) Nucleolar protein NOP5 (Nucleolar protein 5)| (Nopp140-associated protein) Length = 534 Score = 59.3 bits (142), Expect = 1e-08 Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 6/123 (4%) Frame = -1 Query: 717 RYDALGDGEHNSLGVESRLKLETWLRVLEGKELGRSAGSTKGKPKIEVYEKDRKNGPGLI 538 RYDA G+ +++G E+R KLE LR+LE + + + +G+ K K E YE Sbjct: 371 RYDAFGEDSSSAMGAENRAKLEARLRILEDRGIRKISGTGKALAKAEKYEHK-------- 422 Query: 537 APAKTYNPSADLVL-----AQSMEETPKKPDAASKK-RKHDDAVTAPSTELAEEAIQEDG 376 + KTY+PS D L + +EE K+ + KK +K + A E EEA +E Sbjct: 423 SEVKTYDPSGDSTLPTCSKKRKIEEVDKEDEITEKKAKKAKIKIKAEVEEEMEEAEEEQV 482 Query: 375 DQE 367 +E Sbjct: 483 VEE 485
>NOP5_HUMAN (Q9Y2X3) Nucleolar protein NOP5 (Nucleolar protein 5) (NOP58)| Length = 529 Score = 57.8 bits (138), Expect = 3e-08 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 5/118 (4%) Frame = -1 Query: 717 RYDALGDGEHNSLGVESRLKLETWLRVLEGKELGRSAGSTKGKPKIEVYEKDRKNGPGLI 538 RYDA G+ +++GVE+R KLE LR LE + + + +G+ K K E YE Sbjct: 371 RYDAFGEDSSSAMGVENRAKLEARLRTLEDRGIRKISGTGKALAKTEKYEHK-------- 422 Query: 537 APAKTYNPSADLVL-----AQSMEETPKKPDAASKKRKHDDAVTAPSTELAEEAIQED 379 + KTY+PS D L + +E+ K+ + KK K E E+ +E+ Sbjct: 423 SEVKTYDPSGDSTLPTCSKKRKIEQVDKEDEITEKKAKKAKIKVKVEEEEEEKVAEEE 480
>Y5714_ARATH (O04656) Hypothetical protein At5g27140| Length = 435 Score = 49.3 bits (116), Expect = 1e-05 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 3/113 (2%) Frame = -1 Query: 717 RYDALGDGEHNSLGVESRLKLETWLRVLEGKELGRSAGSTKGKPKIEVYEKDRKNGPGLI 538 R DA G+G+ N++GVESRLKLE LR LEG +LG + + EV +KD K Sbjct: 326 RCDAFGNGQDNTMGVESRLKLEARLRNLEGGDLGAC------EEEEEVNDKDTKK----- 374 Query: 537 APAKTYNPSADLVLAQSMEETPKKPDAASKKRKHD---DAVTAPSTELAEEAI 388 ++ +E K + SKKRK + + V P+ + +E + Sbjct: 375 ---------------EADDEEEPKTEECSKKRKKEAELETVEDPAKKSKQEGV 412
>NOP58_YEAST (Q12499) Nucleolar protein NOP58 (Nucleolar protein NOP5)| Length = 511 Score = 48.1 bits (113), Expect = 3e-05 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 8/116 (6%) Frame = -1 Query: 717 RYDALGDGEHNS--LGVESRLKLETWLRVLEGKELGRSAGSTKGKPKIEVYEKDRKNGPG 544 RYDAL + +S +G+ESR K+E L LEG++L + + K+E+ E Sbjct: 372 RYDALAEDRDDSGDIGLESRAKVENRLSQLEGRDLRTTPKVVREAKKVEMTE-------- 423 Query: 543 LIAPAKTYNPSADLVLA------QSMEETPKKPDAASKKRKHDDAVTAPSTELAEE 394 A+ YN AD A S +E +K + KKRK DD + ++ A++ Sbjct: 424 ----ARAYNADADTAKAASDSESDSDDEEEEKKEKKEKKRKRDDDEDSKDSKKAKK 475
>NOP12_NEUCR (Q7S2L7) Nucleolar protein 12| Length = 594 Score = 38.5 bits (88), Expect = 0.021 Identities = 20/60 (33%), Positives = 30/60 (50%) Frame = -1 Query: 546 GLIAPAKTYNPSADLVLAQSMEETPKKPDAASKKRKHDDAVTAPSTELAEEAIQEDGDQE 367 GL+AP K +PS D + A S+ +P A + + AP EE +Q++GD E Sbjct: 6 GLVAPVKKVDPSLDALFATSVGPAKPRPAAKYSEPLPTKSKKAPVPSKKEEDVQDEGDDE 65
>LGE1_YEAST (Q02796) Transcriptional regulatory protein LGE1 (Large cells| protein 1) Length = 332 Score = 36.6 bits (83), Expect = 0.079 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Frame = +3 Query: 126 NSEPKPTQNDLPFFPSS---LGNRSINQPAFSFSSYHFYQTQFPREQPPP 266 NS T N LP PS NRS + A+ +SS H Y RE PPP Sbjct: 161 NSSTSSTSNGLPPPPSVSSITNNRSYHSSAYPYSSSHTYNNYHHRETPPP 210
>SMAD5_RAT (Q9R1V3) Mothers against decapentaplegic homolog 5 (SMAD 5)| (Mothers against DPP homolog 5) (Smad5) Length = 465 Score = 32.7 bits (73), Expect = 1.1 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = +3 Query: 111 SLHNTNSEPKPTQNDLPFFPSSLGNRSINQPAFSFSSYHFYQTQFPREQPPP 266 S H NS P P + P+ PS + N PA S F Q P + PPP Sbjct: 176 SFHQPNSTPFPLSPNSPYPPSPASSTYPNSPASSGPGSPF---QLPADTPPP 224
>NR4A1_CANFA (P51666) Orphan nuclear receptor NR4A1 (Orphan nuclear receptor| HMR) (Orphan nuclear receptor NGFI-B) Length = 598 Score = 31.6 bits (70), Expect = 2.5 Identities = 26/71 (36%), Positives = 30/71 (42%), Gaps = 17/71 (23%) Frame = +3 Query: 246 PREQPPPLSPW--TFFSFS-------CRSW-YQLQETPQRPWTSFSFSSCPP-------G 374 P QPP LSPW +F FS R+W QL + P FS PP Sbjct: 144 PSFQPPQLSPWDGSFGPFSPSQTYEGLRAWTEQLPKASGHPQPPAFFSFSPPTGPSPSLA 203 Query: 375 HHPLELLPQQA 407 PL+L P QA Sbjct: 204 QSPLKLFPSQA 214
>SMAD5_MOUSE (P97454) Mothers against decapentaplegic homolog 5 (SMAD 5)| (Mothers against DPP homolog 5) (Smad5) (mSmad5) (Dwarfin-C) (Dwf-C) Length = 465 Score = 31.6 bits (70), Expect = 2.5 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +3 Query: 111 SLHNTNSEPKPTQNDLPFFPSSLGNRSINQPAFSFSSYHFYQTQFPREQPPP 266 S H N+ P P + P+ PS + N PA S F Q P + PPP Sbjct: 176 SFHQPNNAPFPLSPNSPYPPSPASSTYPNSPASSGPGSPF---QLPADTPPP 224
>SMAD5_HUMAN (Q99717) Mothers against decapentaplegic homolog 5 (SMAD 5)| (Mothers against DPP homolog 5) (Smad5) (hSmad5) (JV5-1) Length = 465 Score = 31.6 bits (70), Expect = 2.5 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +3 Query: 111 SLHNTNSEPKPTQNDLPFFPSSLGNRSINQPAFSFSSYHFYQTQFPREQPPP 266 S H N+ P P + P+ PS + N PA S F Q P + PPP Sbjct: 176 SFHQPNNTPFPLSPNSPYPPSPASSTYPNSPASSGPGSPF---QLPADTPPP 224
>NR4A1_HUMAN (P22736) Orphan nuclear receptor NR4A1 (Orphan nuclear receptor| HMR) (Early response protein NAK1) (TR3 orphan receptor) (ST-59) Length = 598 Score = 31.2 bits (69), Expect = 3.3 Identities = 29/73 (39%), Positives = 34/73 (46%), Gaps = 19/73 (26%) Frame = +3 Query: 246 PREQPPPLSPW--TFFSFS-------CRSW-YQLQET--PQRPWTSFSFSSCPP------ 371 P QPP LSPW +F FS R+W QL + P +P FSFS PP Sbjct: 144 PSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPAFFSFS--PPTGPSPS 201 Query: 372 -GHHPLELLPQQA 407 PL+L P QA Sbjct: 202 LAQSPLKLFPSQA 214
>AFF3_HUMAN (P51826) AF4/FMR2 family member 3 (LAF-4 protein) (Lymphoid nuclear| protein related to AF4) Length = 1227 Score = 31.2 bits (69), Expect = 3.3 Identities = 31/142 (21%), Positives = 49/142 (34%), Gaps = 7/142 (4%) Frame = -1 Query: 549 PGLIAPAKTYNPSADLVLAQSMEETPKKPDAASKKRKHDDAVTAP-STELAEEAIQEDGD 373 PG + P K P+ D L S PKK DA + + + T+ +L + +E+ + Sbjct: 321 PGKVEPTKFPFPNKDSQLVSSGHNNPKKGDAEPESPDNGTSNTSMLEDDLKLSSDEEENE 380 Query: 372 QEGXXXXXXXXKD---VEESPAVDT---XXXXXXXXXXKGTEEEVAPVETESGKNDXXXX 211 Q+ V + P T GT + E+ SG + Sbjct: 381 QQAAQRTALRALSDSAVVQQPNCRTSVPSSKGSSSSSSSGTSSSSSDSESSSGSDSETES 440 Query: 210 KRQAD*CFYSPEKKGRKASHFA 145 S E +G K HF+ Sbjct: 441 S--------SSESEGSKPPHFS 454
>OXR1_CANAL (Q5AEM5) Oxidation resistance protein 1| Length = 345 Score = 31.2 bits (69), Expect = 3.3 Identities = 20/74 (27%), Positives = 34/74 (45%) Frame = +3 Query: 105 NSSLHNTNSEPKPTQNDLPFFPSSLGNRSINQPAFSFSSYHFYQTQFPREQPPPLSPWTF 284 +S +PKP + FF + LGN S N + S +S H + + PPL P T Sbjct: 47 DSVTEKPKEQPKPVKRRGTFFGNLLGNGSKNSSSASLNSSH--SSVSSSSKFPPLGPLTL 104 Query: 285 FSFSCRSWYQLQET 326 + + ++L ++ Sbjct: 105 TGYKESTHHRLLDS 118
>HD2A_SOLCH (Q6V9I6) Histone deacetylase 2a (HD2a) (ScHD2a)| Length = 269 Score = 31.2 bits (69), Expect = 3.3 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 8/84 (9%) Frame = -1 Query: 633 EGKELGRS-AG--STKGKPKIEVYE-----KDRKNGPGLIAPAKTYNPSADLVLAQSMEE 478 E KE G+S AG S GK K+ + E +D + + + S D S EE Sbjct: 126 EPKEAGKSNAGKDSASGKQKVRIVEPTKDDEDESSDDDDSDMGEDEDDSDD-----SEEE 180 Query: 477 TPKKPDAASKKRKHDDAVTAPSTE 406 TPKK + A K+RK D A P T+ Sbjct: 181 TPKKAEPA-KRRKADSATKTPVTD 203
>ANXA1_PIG (P19619) Annexin A1 (Annexin I) (Lipocortin I) (Calpactin II)| (Chromobindin-9) (p35) (Phospholipase A2 inhibitory protein) Length = 346 Score = 30.8 bits (68), Expect = 4.3 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Frame = -1 Query: 567 KDRKNGPG-LIAPAKTYNPSADLVLAQSMEETPKKPDAASKKRKHDDAVTAPSTELAEEA 391 K K GPG ++P T+NPS+D V A T K D A+ H A ++ Sbjct: 26 KGSKGGPGSAVSPYPTFNPSSD-VEASHKAITVKGVDEATIIEIHTKRTNAQRQQIKAAY 84 Query: 390 IQEDG 376 +QE G Sbjct: 85 LQEKG 89
>SNF1_CANAL (P52497) Carbon catabolite derepressing protein kinase (EC| 2.7.11.1) Length = 620 Score = 30.8 bits (68), Expect = 4.3 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Frame = +3 Query: 642 EAMFQASVDSQ-HQGNYVHHHQGHH 713 +A QAS D Q HQ N+ HHH HH Sbjct: 4 QAQPQASADQQQHQHNHHHHHHHHH 28
>SNF1_CANTR (O94168) Carbon catabolite derepressing protein kinase (EC| 2.7.11.1) Length = 619 Score = 30.4 bits (67), Expect = 5.7 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = +3 Query: 654 QASVDSQHQGNYVHHHQGHH 713 Q D QH G++ HHH HH Sbjct: 6 QGQPDQQHSGDHQHHHHHHH 25
>PSD1_DROME (Q9V3P6) 26S proteasome non-ATPase regulatory subunit 1 (26S| proteasome regulatory subunit RPN2) (26S proteasome regulatory complex subunit p110) Length = 1020 Score = 30.4 bits (67), Expect = 5.7 Identities = 27/102 (26%), Positives = 44/102 (43%) Frame = -1 Query: 672 ESRLKLETWLRVLEGKELGRSAGSTKGKPKIEVYEKDRKNGPGLIAPAKTYNPSADLVLA 493 E R K+ T + + ++ R K K++V ++D K G A K AD + Sbjct: 839 EEREKVATAVLSIAARQKRRENADKKEDEKMDV-DEDSKEGA---AVKKDEEAKADEKMV 894 Query: 492 QSMEETPKKPDAASKKRKHDDAVTAPSTELAEEAIQEDGDQE 367 +E PKK D KK++ D A T ++ +E +E Sbjct: 895 T--DEKPKKKDEKEKKKEEDKEKEAAGTSSEKDKDKEKDKKE 934
>ATF4_MOUSE (Q06507) Cyclic AMP-dependent transcription factor ATF-4| (C/EBP-related ATF) (C/ATF) (TAXREB67 homolog) Length = 349 Score = 30.0 bits (66), Expect = 7.4 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Frame = -1 Query: 612 SAGSTKGKPKIEVYEKDRKNGPGLIAPAKTYNPSADLVLAQSMEETPKKPDAASKKRKHD 433 S G ++G P+ + Y+ PG+ AK D L + + KKR Sbjct: 247 SPGGSRGSPRPKPYDP-----PGVSLTAKVKTEKLDKKLKKMEQNKTAATRYRQKKRAEQ 301 Query: 432 DAVTAPSTELAE--EAIQEDGD 373 +A+T EL + EA++E D Sbjct: 302 EALTGECKELEKKNEALKEKAD 323
>RL26L_HUMAN (Q9UNX3) 60S ribosomal protein L26-like 1| Length = 145 Score = 30.0 bits (66), Expect = 7.4 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -1 Query: 696 GEHNSLGVESRLKLET-WLRVLEGKELGRSAGSTKGKPKIEVYEK 565 G H S V +RLKL+ ++LE K R G KGK K E+ EK Sbjct: 98 GIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEELIEK 142
>ANTR2_HUMAN (P58335) Anthrax toxin receptor 2 precursor (Capillary| morphogenesis gene 2 protein) (CMG-2) Length = 489 Score = 30.0 bits (66), Expect = 7.4 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = +1 Query: 4 KLNSIVCPIVVVNTAA*TLQ-SLYTIANKHRIAGEIPVYTTQILNLSLRKMTCLSSLLLW 180 +LNS++CP ++N A TL S+ K I+G + V T+ N + L LLL Sbjct: 273 QLNSMLCPAPILNKAGETLDVSVSFNGGKSVISGSLIVTATECSNGIAAIIVILVLLLLL 332 Query: 181 GI 186 GI Sbjct: 333 GI 334
>RL26_CHICK (P47832) 60S ribosomal protein L26 (Fragment)| Length = 128 Score = 29.6 bits (65), Expect = 9.7 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -1 Query: 696 GEHNSLGVESRLKLET-WLRVLEGKELGRSAGSTKGKPKIEVYEK 565 G H S V +RLKL+ ++LE K R G KGK K E EK Sbjct: 81 GIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEK 125
>RL26_MOUSE (P61255) 60S ribosomal protein L26 (Silica-induced gene 20 protein)| (SIG-20) Length = 145 Score = 29.6 bits (65), Expect = 9.7 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -1 Query: 696 GEHNSLGVESRLKLET-WLRVLEGKELGRSAGSTKGKPKIEVYEK 565 G H S V +RLKL+ ++LE K R G KGK K E EK Sbjct: 98 GIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEK 142
>RL26_MACFA (P61256) 60S ribosomal protein L26| Length = 145 Score = 29.6 bits (65), Expect = 9.7 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -1 Query: 696 GEHNSLGVESRLKLET-WLRVLEGKELGRSAGSTKGKPKIEVYEK 565 G H S V +RLKL+ ++LE K R G KGK K E EK Sbjct: 98 GIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEK 142
>RL26_HUMAN (P61254) 60S ribosomal protein L26| Length = 145 Score = 29.6 bits (65), Expect = 9.7 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -1 Query: 696 GEHNSLGVESRLKLET-WLRVLEGKELGRSAGSTKGKPKIEVYEK 565 G H S V +RLKL+ ++LE K R G KGK K E EK Sbjct: 98 GIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEK 142
>RL26_BOVIN (P61257) 60S ribosomal protein L26| Length = 145 Score = 29.6 bits (65), Expect = 9.7 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -1 Query: 696 GEHNSLGVESRLKLET-WLRVLEGKELGRSAGSTKGKPKIEVYEK 565 G H S V +RLKL+ ++LE K R G KGK K E EK Sbjct: 98 GIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEK 142
>B4_XENLA (P15308) B4 protein (Linker histone B4) (Histone H1-like protein)| Length = 273 Score = 29.6 bits (65), Expect = 9.7 Identities = 28/135 (20%), Positives = 51/135 (37%) Frame = -1 Query: 627 KELGRSAGSTKGKPKIEVYEKDRKNGPGLIAPAKTYNPSADLVLAQSMEETPKKPDAASK 448 + L SA G+ K+ K K G +A ++ +P+A+ +ET KK K Sbjct: 101 RPLNSSATGATGRFKLAKPVKTTKAGKENVA-SENVDPNAE-------QETQKKAPKKEK 152 Query: 447 KRKHDDAVTAPSTELAEEAIQEDGDQEGXXXXXXXXKDVEESPAVDTXXXXXXXXXXKGT 268 K K + T+ + +ED D++ K+ +E + + Sbjct: 153 KAKTEKEPKGEKTKAVAKKAKEDSDEKPKVAKSKKDKEAKEVDKANKEAKEVDKANKEAK 212 Query: 267 EEEVAPVETESGKND 223 E + AP + K + Sbjct: 213 EVDKAPAKKPKAKTE 227
>TXND3_ANTCR (P90666) Thioredoxin domain-containing protein 3 homolog| (Intermediate chain 1) Length = 837 Score = 29.6 bits (65), Expect = 9.7 Identities = 17/60 (28%), Positives = 26/60 (43%) Frame = -1 Query: 495 AQSMEETPKKPDAASKKRKHDDAVTAPSTELAEEAIQEDGDQEGXXXXXXXXKDVEESPA 316 A + EET + + KK + + AP+ EEA+ +G EG + EE A Sbjct: 777 APAAEETQQTQEGEEKKEETEQTQDAPAAGGGEEAVATEGGGEGDAKPEGGEEKTEEQTA 836
>PRP46_SCHPO (O13615) Pre-mRNA-splicing factor prp46 (Pre-mRNA-processing| protein 5) (Complexed with cdc5 protein 1) Length = 473 Score = 29.6 bits (65), Expect = 9.7 Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 14/94 (14%) Frame = -1 Query: 633 EGKELGRSAGSTKGKPKIEVYEKDRKNGPGLIAPAKTYNPSADL--------------VL 496 E E G G T GK K YE+D L A + NPS+ + V Sbjct: 52 EHLEYGSVLGGTVGKRKNRHYEEDTIGSNALTVRADSENPSSQVITKFSDPNKKIAGQVS 111 Query: 495 AQSMEETPKKPDAASKKRKHDDAVTAPSTELAEE 394 QS+E+ P+AA + A T LAE+ Sbjct: 112 MQSLEKIKGVPEAAHRIAGESQASLVKRT-LAEQ 144 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,046,128 Number of Sequences: 219361 Number of extensions: 1775149 Number of successful extensions: 6264 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 5792 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6199 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7309604013 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)