ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK062890.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 3e-24
2gb|AY108505.1| Zea mays PCO143785 mRNA sequence 111 3e-21
3ref|XM_475884.1| Oryza sativa (japonica cultivar-group), predic... 82 2e-12
4dbj|AK062997.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
5gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.13
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
7gb|AC116351.2| Homo sapiens chromosome 5 clone RP11-43F13, compl... 44 0.53
8ref|XM_785122.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 2.1
9ref|XM_787355.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 2.1
10dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
11emb|BX248231.22| Zebrafish DNA sequence from clone CH211-137C4 i... 42 2.1
12gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
13gb|AC167022.4| Mus musculus BAC clone RP23-183A4 from chromosome... 42 2.1
14ref|NM_112199.2| Arabidopsis thaliana MAPKKK7; ATP binding / kin... 40 8.3
15gb|AC132404.5| Mus musculus BAC clone RP23-328O21 from chromosom... 40 8.3
16emb|AJ224982.1|ATH224982 Arabidopsis thaliana MAP3K epsilon gene 40 8.3
17emb|AL359075.15| Human DNA sequence from clone RP11-568K15 on ch... 40 8.3
18emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 8.3
19emb|BX957231.6| Zebrafish DNA sequence from clone DKEY-10O22 in ... 40 8.3
20emb|CR352217.9| Zebrafish DNA sequence from clone CH211-129P13 i... 40 8.3
21dbj|AB027189.1| Gentiana lutea GenHMG2 mRNA for 3-hydroxy-3-meth... 40 8.3
22gb|CP000249.1| Frankia sp. CcI3, complete genome 40 8.3
23gb|AC074182.6| Homo sapiens BAC clone RP11-553G13 from 2, comple... 40 8.3
24gb|AC074099.6| Homo sapiens BAC clone RP11-605B16 from 2, comple... 40 8.3
25dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 8.3
26dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 8.3
27gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malay... 40 8.3
28dbj|AP005228.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 8.3
29emb|AL672241.6| Mouse DNA sequence from clone RP23-147D3 on chro... 40 8.3
30dbj|AP000874.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 8.3

>dbj|AK062890.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-E03, full
           insert sequence
          Length = 761

 Score =  121 bits (61), Expect = 3e-24
 Identities = 157/189 (83%)
 Strand = Plus / Minus

                                                                       
Query: 422 tcatttcttccactgcggcagccgttggacgacgaccttgccggagttctccttgtttcc 481
           |||||| |||||||| ||||| ||||||||||| ||||||||||| || || ||||||||
Sbjct: 590 tcattttttccactggggcagacgttggacgacaaccttgccggaattttctttgtttcc 531

                                                                       
Query: 482 gacgatcgtctggcaggtcagcctccacgactccggtttcttcttcaggtaacggttctc 541
            || || ||||| || |  |||||||| |||||||||||||||||||| || ||||||||
Sbjct: 530 aacaatagtctgacaagcaagcctccatgactccggtttcttcttcagataccggttctc 471

                                                                       
Query: 542 ggcgtccgtcctcgggctcaggagctccttcccgtcgattatctcgacgatgcaggtgcc 601
            | ||  || ||     ||||||||||||| || || | ||||||||||||||| |||||
Sbjct: 470 agtgtttgttctttcattcaggagctccttgccatcaactatctcgacgatgcaagtgcc 411

                    
Query: 602 gcagctgcc 610
           |||||||||
Sbjct: 410 gcagctgcc 402



to top

>gb|AY108505.1| Zea mays PCO143785 mRNA sequence
          Length = 812

 Score =  111 bits (56), Expect = 3e-21
 Identities = 125/148 (84%)
 Strand = Plus / Minus

                                                                       
Query: 457 ccttgccggagttctccttgtttccgacgatcgtctggcaggtcagcctccacgactccg 516
           ||||||| |||||||| ||||| || || || |||||||| |  |||||||| || || |
Sbjct: 602 ccttgccagagttctctttgttgcctacaatagtctggcaagctagcctccatgagtctg 543

                                                                       
Query: 517 gtttcttcttcaggtaacggttctcggcgtccgtcctcgggctcaggagctccttcccgt 576
           |||||||||||||||| || ||||||| || |||||||    ||||||||||||| || |
Sbjct: 542 gtttcttcttcaggtaccgattctcggtgttcgtcctctcattcaggagctcctttccat 483

                                       
Query: 577 cgattatctcgacgatgcaggtgccgca 604
           ||||||||||||||||||| ||||||||
Sbjct: 482 cgattatctcgacgatgcaagtgccgca 455



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 422 tcatttcttccactgcggcagccgttggac 451
           |||| |||||||||| ||||||||||||||
Sbjct: 764 tcatctcttccactggggcagccgttggac 735



to top

>ref|XM_475884.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 633

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 125/153 (81%)
 Strand = Plus / Minus

                                                                       
Query: 458 cttgccggagttctccttgtttccgacgatcgtctggcaggtcagcctccacgactccgg 517
           ||||||||| || || |||||||| || || ||||| || |  |||||||| ||||||||
Sbjct: 522 cttgccggaattttctttgtttccaacaatagtctgacaagcaagcctccatgactccgg 463

                                                                       
Query: 518 tttcttcttcaggtaacggttctcggcgtccgtcctcgggctcaggagctccttcccgtc 577
           |||||||||||| || |||||||| | ||  || ||     ||||||||||||| || ||
Sbjct: 462 tttcttcttcagataccggttctcagtgtttgttctttcattcaggagctccttgccatc 403

                                            
Query: 578 gattatctcgacgatgcaggtgccgcagctgcc 610
            | ||||||||||||||| ||||||||||||||
Sbjct: 402 aactatctcgacgatgcaagtgccgcagctgcc 370



to top

>dbj|AK062997.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-G11, full
           insert sequence
          Length = 897

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 125/153 (81%)
 Strand = Plus / Minus

                                                                       
Query: 458 cttgccggagttctccttgtttccgacgatcgtctggcaggtcagcctccacgactccgg 517
           ||||||||| || || |||||||| || || ||||| || |  |||||||| ||||||||
Sbjct: 554 cttgccggaattttctttgtttccaacaatagtctgacaagcaagcctccatgactccgg 495

                                                                       
Query: 518 tttcttcttcaggtaacggttctcggcgtccgtcctcgggctcaggagctccttcccgtc 577
           |||||||||||| || |||||||| | ||  || ||     ||||||||||||| || ||
Sbjct: 494 tttcttcttcagataccggttctcagtgtttgttctttcattcaggagctccttgccatc 435

                                            
Query: 578 gattatctcgacgatgcaggtgccgcagctgcc 610
            | ||||||||||||||| ||||||||||||||
Sbjct: 434 aactatctcgacgatgcaagtgccgcagctgcc 402



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 422 tcatttcttccactgcggcagccgttggacgacgacct 459
           |||||| |||||||| ||||| ||||||||||| ||||
Sbjct: 732 tcattttttccactggggcagacgttggacgacaacct 695



to top

>gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1263_E10,
             complete sequence
          Length = 116469

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 584   ctcgacgatgcaggtgccgcagctgcc 610
             |||||||||||| ||||||||||||||
Sbjct: 99041 ctcgacgatgcaagtgccgcagctgcc 99067



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                         
Query: 457   ccttgccggagttctccttgtttccgacgatcgtctggcaggtcagcctccacgactccg 516
             |||||||||| || || |||||||| || || ||||| || |  |||||||| |||||||
Sbjct: 98558 ccttgccggaattttctttgtttccaacaatagtctgacaagcaagcctccatgactccg 98617

                   
Query: 517   gtttct 522
             ||||||
Sbjct: 98618 gtttct 98623



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 422   tcatttcttccactgcggcagccgttggacgacgacct 459
             |||||| |||||||| ||||| ||||||||||| ||||
Sbjct: 98287 tcattttttccactggggcagacgttggacgacaacct 98324



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 584      ctcgacgatgcaggtgccgcagctgcc 610
                |||||||||||| ||||||||||||||
Sbjct: 27386584 ctcgacgatgcaagtgccgcagctgcc 27386610



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                            
Query: 457      ccttgccggagttctccttgtttccgacgatcgtctggcaggtcagcctccacgactccg 516
                |||||||||| || || |||||||| || || ||||| || |  |||||||| |||||||
Sbjct: 27386101 ccttgccggaattttctttgtttccaacaatagtctgacaagcaagcctccatgactccg 27386160

                      
Query: 517      gtttct 522
                ||||||
Sbjct: 27386161 gtttct 27386166



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                      
Query: 422      tcatttcttccactgcggcagccgttggacgacgacct 459
                |||||| |||||||| ||||| ||||||||||| ||||
Sbjct: 27385830 tcattttttccactggggcagacgttggacgacaacct 27385867



to top

>gb|AC116351.2| Homo sapiens chromosome 5 clone RP11-43F13, complete sequence
          Length = 187289

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 224    tgatgccagcaggagtaacagatgtg 249
              ||||||||||||||| ||||||||||
Sbjct: 139858 tgatgccagcaggagcaacagatgtg 139883



to top

>ref|XM_785122.1| PREDICTED: Strongylocentrotus purpuratus similar to
            kielin/chordin-like protein 1 (LOC585289), mRNA
          Length = 6822

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 485  gatcgtctggcaggtcagcct 505
            |||||||||||||||||||||
Sbjct: 1104 gatcgtctggcaggtcagcct 1084



to top

>ref|XM_787355.1| PREDICTED: Strongylocentrotus purpuratus similar to
            kielin/chordin-like protein 1 (LOC587640), mRNA
          Length = 11130

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 485  gatcgtctggcaggtcagcct 505
            |||||||||||||||||||||
Sbjct: 5925 gatcgtctggcaggtcagcct 5905



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 445      gttggacgacgaccttgccgg 465
                |||||||||||||||||||||
Sbjct: 12045842 gttggacgacgaccttgccgg 12045862



to top

>emb|BX248231.22| Zebrafish DNA sequence from clone CH211-137C4 in linkage group 8,
             complete sequence
          Length = 150101

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 248   tgttcttcttgtgttcatctc 268
             |||||||||||||||||||||
Sbjct: 59133 tgttcttcttgtgttcatctc 59153



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 445      gttggacgacgaccttgccgg 465
                |||||||||||||||||||||
Sbjct: 11931361 gttggacgacgaccttgccgg 11931341



to top

>gb|AC167022.4| Mus musculus BAC clone RP23-183A4 from chromosome 8, complete sequence
          Length = 224462

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 110    ttgattccaggaagaaaacca 130
              |||||||||||||||||||||
Sbjct: 146822 ttgattccaggaagaaaacca 146802



to top

>ref|NM_112199.2| Arabidopsis thaliana MAPKKK7; ATP binding / kinase/ protein kinase/
            protein serine/threonine kinase/ protein-tyrosine kinase
            AT3G13530 (MAPKKK7) mRNA, complete cds
          Length = 4353

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 294  ttgtcagaaacttgttgcca 313
            ||||||||||||||||||||
Sbjct: 1785 ttgtcagaaacttgttgcca 1804



to top

>gb|AC132404.5| Mus musculus BAC clone RP23-328O21 from chromosome 17, complete
             sequence
          Length = 207685

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 425   tttcttccactgcggcagcc 444
             ||||||||||||||||||||
Sbjct: 89132 tttcttccactgcggcagcc 89151



to top

>emb|AJ224982.1|ATH224982 Arabidopsis thaliana MAP3K epsilon gene
          Length = 10054

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 294  ttgtcagaaacttgttgcca 313
            ||||||||||||||||||||
Sbjct: 4754 ttgtcagaaacttgttgcca 4773



to top

>emb|AL359075.15| Human DNA sequence from clone RP11-568K15 on chromosome 1 Contains the
             5' end of a gene for regucalcin gene promotor region
             related protein (RGPR), DKFZp686C2486, complete sequence
          Length = 119859

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   ccagcaggagtaacagatgt 248
             ||||||||||||||||||||
Sbjct: 12286 ccagcaggagtaacagatgt 12267



to top

>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2234072

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 80      aatttacaatttacgatttacagt 103
               |||||||||||||| |||||||||
Sbjct: 1088728 aatttacaatttacaatttacagt 1088705



to top

>emb|BX957231.6| Zebrafish DNA sequence from clone DKEY-10O22 in linkage group 23,
              complete sequence
          Length = 115957

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     aatttacaatttacgattta 99
              ||||||||||||||||||||
Sbjct: 106467 aatttacaatttacgattta 106486



to top

>emb|CR352217.9| Zebrafish DNA sequence from clone CH211-129P13 in linkage group 15,
             complete sequence
          Length = 162948

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   aagaaaaccaagatatggtt 140
             ||||||||||||||||||||
Sbjct: 20550 aagaaaaccaagatatggtt 20531



to top

>dbj|AB027189.1| Gentiana lutea GenHMG2 mRNA for 3-hydroxy-3-methylglutaryl coenzyme A
            reductase, complete cds
          Length = 1971

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 387  tacagaacatccaatgtgca 406
            ||||||||||||||||||||
Sbjct: 1064 tacagaacatccaatgtgca 1083



to top

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 588    acgatgcaggtgccgcagct 607
              ||||||||||||||||||||
Sbjct: 382994 acgatgcaggtgccgcagct 382975



to top

>gb|AC074182.6| Homo sapiens BAC clone RP11-553G13 from 2, complete sequence
          Length = 190436

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    ggtactagggacatgccaag 207
              ||||||||||||||||||||
Sbjct: 142298 ggtactagggacatgccaag 142317



to top

>gb|AC074099.6| Homo sapiens BAC clone RP11-605B16 from 2, complete sequence
          Length = 143653

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 223    ctgatgccagcaggagtaacagat 246
              ||||| ||||||||||||||||||
Sbjct: 122115 ctgatcccagcaggagtaacagat 122138



to top

>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 585     tcgacgatgcaggtgccgca 604
               ||||||||||||||||||||
Sbjct: 3198510 tcgacgatgcaggtgccgca 3198529



to top

>dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRP15
          Length = 83287

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   ttgtcagaaacttgttgcca 313
             ||||||||||||||||||||
Sbjct: 69398 ttgtcagaaacttgttgcca 69379



to top

>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome
          Length = 1080084

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     cttttactggttcaacacaa 81
              ||||||||||||||||||||
Sbjct: 704573 cttttactggttcaacacaa 704554



to top

>dbj|AP005228.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-119P12, complete
              sequence
          Length = 186978

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    aggaagaaaaccaagatatg 137
              ||||||||||||||||||||
Sbjct: 182942 aggaagaaaaccaagatatg 182961



to top

>emb|AL672241.6| Mouse DNA sequence from clone RP23-147D3 on chromosome 2, complete
             sequence
          Length = 197925

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 225   gatgccagcaggagtaacagatgt 248
             |||||||||||||| |||||||||
Sbjct: 28290 gatgccagcaggagaaacagatgt 28267



to top

>dbj|AP000874.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-760N9, complete
             sequences
          Length = 150638

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   aggaagaaaaccaagatatg 137
             ||||||||||||||||||||
Sbjct: 56103 aggaagaaaaccaagatatg 56122


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,839,213
Number of Sequences: 3902068
Number of extensions: 4839213
Number of successful extensions: 90066
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89857
Number of HSP's gapped (non-prelim): 208
length of query: 610
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 587
effective length of database: 17,143,297,704
effective search space: 10063115752248
effective search space used: 10063115752248
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top