| Clone Name | rbaal2b01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK062890.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-E03, full insert sequence Length = 761 Score = 121 bits (61), Expect = 3e-24 Identities = 157/189 (83%) Strand = Plus / Minus Query: 422 tcatttcttccactgcggcagccgttggacgacgaccttgccggagttctccttgtttcc 481 |||||| |||||||| ||||| ||||||||||| ||||||||||| || || |||||||| Sbjct: 590 tcattttttccactggggcagacgttggacgacaaccttgccggaattttctttgtttcc 531 Query: 482 gacgatcgtctggcaggtcagcctccacgactccggtttcttcttcaggtaacggttctc 541 || || ||||| || | |||||||| |||||||||||||||||||| || |||||||| Sbjct: 530 aacaatagtctgacaagcaagcctccatgactccggtttcttcttcagataccggttctc 471 Query: 542 ggcgtccgtcctcgggctcaggagctccttcccgtcgattatctcgacgatgcaggtgcc 601 | || || || ||||||||||||| || || | ||||||||||||||| ||||| Sbjct: 470 agtgtttgttctttcattcaggagctccttgccatcaactatctcgacgatgcaagtgcc 411 Query: 602 gcagctgcc 610 ||||||||| Sbjct: 410 gcagctgcc 402
>gb|AY108505.1| Zea mays PCO143785 mRNA sequence Length = 812 Score = 111 bits (56), Expect = 3e-21 Identities = 125/148 (84%) Strand = Plus / Minus Query: 457 ccttgccggagttctccttgtttccgacgatcgtctggcaggtcagcctccacgactccg 516 ||||||| |||||||| ||||| || || || |||||||| | |||||||| || || | Sbjct: 602 ccttgccagagttctctttgttgcctacaatagtctggcaagctagcctccatgagtctg 543 Query: 517 gtttcttcttcaggtaacggttctcggcgtccgtcctcgggctcaggagctccttcccgt 576 |||||||||||||||| || ||||||| || ||||||| ||||||||||||| || | Sbjct: 542 gtttcttcttcaggtaccgattctcggtgttcgtcctctcattcaggagctcctttccat 483 Query: 577 cgattatctcgacgatgcaggtgccgca 604 ||||||||||||||||||| |||||||| Sbjct: 482 cgattatctcgacgatgcaagtgccgca 455 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Minus Query: 422 tcatttcttccactgcggcagccgttggac 451 |||| |||||||||| |||||||||||||| Sbjct: 764 tcatctcttccactggggcagccgttggac 735
>ref|XM_475884.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 633 Score = 81.8 bits (41), Expect = 2e-12 Identities = 125/153 (81%) Strand = Plus / Minus Query: 458 cttgccggagttctccttgtttccgacgatcgtctggcaggtcagcctccacgactccgg 517 ||||||||| || || |||||||| || || ||||| || | |||||||| |||||||| Sbjct: 522 cttgccggaattttctttgtttccaacaatagtctgacaagcaagcctccatgactccgg 463 Query: 518 tttcttcttcaggtaacggttctcggcgtccgtcctcgggctcaggagctccttcccgtc 577 |||||||||||| || |||||||| | || || || ||||||||||||| || || Sbjct: 462 tttcttcttcagataccggttctcagtgtttgttctttcattcaggagctccttgccatc 403 Query: 578 gattatctcgacgatgcaggtgccgcagctgcc 610 | ||||||||||||||| |||||||||||||| Sbjct: 402 aactatctcgacgatgcaagtgccgcagctgcc 370
>dbj|AK062997.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-G11, full insert sequence Length = 897 Score = 81.8 bits (41), Expect = 2e-12 Identities = 125/153 (81%) Strand = Plus / Minus Query: 458 cttgccggagttctccttgtttccgacgatcgtctggcaggtcagcctccacgactccgg 517 ||||||||| || || |||||||| || || ||||| || | |||||||| |||||||| Sbjct: 554 cttgccggaattttctttgtttccaacaatagtctgacaagcaagcctccatgactccgg 495 Query: 518 tttcttcttcaggtaacggttctcggcgtccgtcctcgggctcaggagctccttcccgtc 577 |||||||||||| || |||||||| | || || || ||||||||||||| || || Sbjct: 494 tttcttcttcagataccggttctcagtgtttgttctttcattcaggagctccttgccatc 435 Query: 578 gattatctcgacgatgcaggtgccgcagctgcc 610 | ||||||||||||||| |||||||||||||| Sbjct: 434 aactatctcgacgatgcaagtgccgcagctgcc 402 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Minus Query: 422 tcatttcttccactgcggcagccgttggacgacgacct 459 |||||| |||||||| ||||| ||||||||||| |||| Sbjct: 732 tcattttttccactggggcagacgttggacgacaacct 695
>gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1263_E10, complete sequence Length = 116469 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 584 ctcgacgatgcaggtgccgcagctgcc 610 |||||||||||| |||||||||||||| Sbjct: 99041 ctcgacgatgcaagtgccgcagctgcc 99067 Score = 44.1 bits (22), Expect = 0.53 Identities = 55/66 (83%) Strand = Plus / Plus Query: 457 ccttgccggagttctccttgtttccgacgatcgtctggcaggtcagcctccacgactccg 516 |||||||||| || || |||||||| || || ||||| || | |||||||| ||||||| Sbjct: 98558 ccttgccggaattttctttgtttccaacaatagtctgacaagcaagcctccatgactccg 98617 Query: 517 gtttct 522 |||||| Sbjct: 98618 gtttct 98623 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Plus Query: 422 tcatttcttccactgcggcagccgttggacgacgacct 459 |||||| |||||||| ||||| ||||||||||| |||| Sbjct: 98287 tcattttttccactggggcagacgttggacgacaacct 98324
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 584 ctcgacgatgcaggtgccgcagctgcc 610 |||||||||||| |||||||||||||| Sbjct: 27386584 ctcgacgatgcaagtgccgcagctgcc 27386610 Score = 44.1 bits (22), Expect = 0.53 Identities = 55/66 (83%) Strand = Plus / Plus Query: 457 ccttgccggagttctccttgtttccgacgatcgtctggcaggtcagcctccacgactccg 516 |||||||||| || || |||||||| || || ||||| || | |||||||| ||||||| Sbjct: 27386101 ccttgccggaattttctttgtttccaacaatagtctgacaagcaagcctccatgactccg 27386160 Query: 517 gtttct 522 |||||| Sbjct: 27386161 gtttct 27386166 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Plus Query: 422 tcatttcttccactgcggcagccgttggacgacgacct 459 |||||| |||||||| ||||| ||||||||||| |||| Sbjct: 27385830 tcattttttccactggggcagacgttggacgacaacct 27385867
>gb|AC116351.2| Homo sapiens chromosome 5 clone RP11-43F13, complete sequence Length = 187289 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 224 tgatgccagcaggagtaacagatgtg 249 ||||||||||||||| |||||||||| Sbjct: 139858 tgatgccagcaggagcaacagatgtg 139883
>ref|XM_785122.1| PREDICTED: Strongylocentrotus purpuratus similar to kielin/chordin-like protein 1 (LOC585289), mRNA Length = 6822 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 gatcgtctggcaggtcagcct 505 ||||||||||||||||||||| Sbjct: 1104 gatcgtctggcaggtcagcct 1084
>ref|XM_787355.1| PREDICTED: Strongylocentrotus purpuratus similar to kielin/chordin-like protein 1 (LOC587640), mRNA Length = 11130 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 gatcgtctggcaggtcagcct 505 ||||||||||||||||||||| Sbjct: 5925 gatcgtctggcaggtcagcct 5905
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 445 gttggacgacgaccttgccgg 465 ||||||||||||||||||||| Sbjct: 12045842 gttggacgacgaccttgccgg 12045862
>emb|BX248231.22| Zebrafish DNA sequence from clone CH211-137C4 in linkage group 8, complete sequence Length = 150101 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 tgttcttcttgtgttcatctc 268 ||||||||||||||||||||| Sbjct: 59133 tgttcttcttgtgttcatctc 59153
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 445 gttggacgacgaccttgccgg 465 ||||||||||||||||||||| Sbjct: 11931361 gttggacgacgaccttgccgg 11931341
>gb|AC167022.4| Mus musculus BAC clone RP23-183A4 from chromosome 8, complete sequence Length = 224462 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 ttgattccaggaagaaaacca 130 ||||||||||||||||||||| Sbjct: 146822 ttgattccaggaagaaaacca 146802
>ref|NM_112199.2| Arabidopsis thaliana MAPKKK7; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT3G13530 (MAPKKK7) mRNA, complete cds Length = 4353 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ttgtcagaaacttgttgcca 313 |||||||||||||||||||| Sbjct: 1785 ttgtcagaaacttgttgcca 1804
>gb|AC132404.5| Mus musculus BAC clone RP23-328O21 from chromosome 17, complete sequence Length = 207685 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 tttcttccactgcggcagcc 444 |||||||||||||||||||| Sbjct: 89132 tttcttccactgcggcagcc 89151
>emb|AJ224982.1|ATH224982 Arabidopsis thaliana MAP3K epsilon gene Length = 10054 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ttgtcagaaacttgttgcca 313 |||||||||||||||||||| Sbjct: 4754 ttgtcagaaacttgttgcca 4773
>emb|AL359075.15| Human DNA sequence from clone RP11-568K15 on chromosome 1 Contains the 5' end of a gene for regucalcin gene promotor region related protein (RGPR), DKFZp686C2486, complete sequence Length = 119859 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ccagcaggagtaacagatgt 248 |||||||||||||||||||| Sbjct: 12286 ccagcaggagtaacagatgt 12267
>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2234072 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 aatttacaatttacgatttacagt 103 |||||||||||||| ||||||||| Sbjct: 1088728 aatttacaatttacaatttacagt 1088705
>emb|BX957231.6| Zebrafish DNA sequence from clone DKEY-10O22 in linkage group 23, complete sequence Length = 115957 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 aatttacaatttacgattta 99 |||||||||||||||||||| Sbjct: 106467 aatttacaatttacgattta 106486
>emb|CR352217.9| Zebrafish DNA sequence from clone CH211-129P13 in linkage group 15, complete sequence Length = 162948 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 aagaaaaccaagatatggtt 140 |||||||||||||||||||| Sbjct: 20550 aagaaaaccaagatatggtt 20531
>dbj|AB027189.1| Gentiana lutea GenHMG2 mRNA for 3-hydroxy-3-methylglutaryl coenzyme A reductase, complete cds Length = 1971 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 tacagaacatccaatgtgca 406 |||||||||||||||||||| Sbjct: 1064 tacagaacatccaatgtgca 1083
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 588 acgatgcaggtgccgcagct 607 |||||||||||||||||||| Sbjct: 382994 acgatgcaggtgccgcagct 382975
>gb|AC074182.6| Homo sapiens BAC clone RP11-553G13 from 2, complete sequence Length = 190436 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 ggtactagggacatgccaag 207 |||||||||||||||||||| Sbjct: 142298 ggtactagggacatgccaag 142317
>gb|AC074099.6| Homo sapiens BAC clone RP11-605B16 from 2, complete sequence Length = 143653 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 ctgatgccagcaggagtaacagat 246 ||||| |||||||||||||||||| Sbjct: 122115 ctgatcccagcaggagtaacagat 122138
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 585 tcgacgatgcaggtgccgca 604 |||||||||||||||||||| Sbjct: 3198510 tcgacgatgcaggtgccgca 3198529
>dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRP15 Length = 83287 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 ttgtcagaaacttgttgcca 313 |||||||||||||||||||| Sbjct: 69398 ttgtcagaaacttgttgcca 69379
>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome Length = 1080084 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 cttttactggttcaacacaa 81 |||||||||||||||||||| Sbjct: 704573 cttttactggttcaacacaa 704554
>dbj|AP005228.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-119P12, complete sequence Length = 186978 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aggaagaaaaccaagatatg 137 |||||||||||||||||||| Sbjct: 182942 aggaagaaaaccaagatatg 182961
>emb|AL672241.6| Mouse DNA sequence from clone RP23-147D3 on chromosome 2, complete sequence Length = 197925 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 gatgccagcaggagtaacagatgt 248 |||||||||||||| ||||||||| Sbjct: 28290 gatgccagcaggagaaacagatgt 28267
>dbj|AP000874.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-760N9, complete sequences Length = 150638 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aggaagaaaaccaagatatg 137 |||||||||||||||||||| Sbjct: 56103 aggaagaaaaccaagatatg 56122 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,839,213 Number of Sequences: 3902068 Number of extensions: 4839213 Number of successful extensions: 90066 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89857 Number of HSP's gapped (non-prelim): 208 length of query: 610 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 587 effective length of database: 17,143,297,704 effective search space: 10063115752248 effective search space used: 10063115752248 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)