ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
2dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
3dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
4dbj|AB117987.1| Oryza sativa (japonica cultivar-group) bip103 mR... 101 3e-18
5dbj|AK100527.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
6dbj|AK059253.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
7gb|AY105847.1| Zea mays PCO081230 mRNA sequence 64 6e-07
8gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 46 0.15
9ref|XM_464548.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.58
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.58
11dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.58
12emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete ... 42 2.3
13emb|AL022243.3|SPCC364 S.pombe chromosome III cosmid c364 42 2.3
14ref|NM_001022836.1| Schizosaccharomyces pombe 972h- hypothetical... 42 2.3
15ref|XM_507220.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 9.1
16ref|XM_482186.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.1
17gb|AY756174.4| Oryza rufipogon putative leucine-rich repeat rece... 40 9.1
18gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.1
19gb|AC134885.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 9.1
20emb|AL080312.14|HSJ1025A1 Human DNA sequence from clone RP5-1025... 40 9.1
21emb|AL035667.12|HS805C22 Human DNA sequence from clone RP4-805C2... 40 9.1
22gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 9.1
23emb|CR391977.5| Zebrafish DNA sequence from clone DKEYP-73B11 in... 40 9.1
24gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.1
25dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 9.1
26gb|CP000249.1| Frankia sp. CcI3, complete genome 40 9.1
27gb|AC093414.3| Homo sapiens chromosome 3 clone RP11-193I22, comp... 40 9.1
28gb|AC018616.5|AC018616 Homo sapiens chromosome 8, clone RP11-157... 40 9.1
29emb|BX323880.7| Zebrafish DNA sequence from clone CH211-139K8 in... 40 9.1
30dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
31dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
32dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
33gb|AC018690.5| Homo sapiens BAC clone RP11-527J8 from 2, complet... 40 9.1
34gb|AC137935.2| Homo sapiens chromosome 3 clone RP11-626A1, compl... 40 9.1
35dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 9.1
36gb|AC007395.3|AC007395 Homo sapiens BAC clone RP11-504O1 from 2,... 40 9.1
37gb|AC063945.16| Homo sapiens 12 BAC RP11-417A9 (Roswell Park Can... 40 9.1
38gb|AC068642.25| Homo sapiens 12 BAC RP11-328J6 (Roswell Park Can... 40 9.1
39dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
40dbj|AP007224.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
41dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
42dbj|AB117988.1| Oryza sativa (japonica cultivar-group) bip131 mR... 40 9.1
43dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
44dbj|AK111680.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.1
45dbj|AK099893.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.1
46dbj|AK067513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.1
47emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 9.1
48gb|AF031882.1|AF031882 Euprymna morsei internal transcribed spac... 40 9.1
49gb|AF031881.1|AF031881 Euprymna scolopes internal transcribed sp... 40 9.1 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  101 bits (51), Expect = 3e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                            
Query: 371      gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctttggcagcggggcc 430
                ||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 10790685 gcccaggaccagtacgactgggctttcttcctcctcaggatcgccttcggcagcggggcc 10790626

                           
Query: 431      ttggtcttggt 441
                ||| |||||||
Sbjct: 10790625 ttgctcttggt 10790615



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                            
Query: 261      tttccttacatcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccg 320
                ||||||| ||||||||||| | |||||| ||| ||||||||||||||||||| ||| | |
Sbjct: 10790789 tttccttccatcagttgctagcgctcgctgggaggtagtactggtagtagcctagcacgg 10790730

                                      
Query: 321      cgagcagggcgacgagcacggc 342
                | ||||||||||||||| ||||
Sbjct: 10790729 caagcagggcgacgagcgcggc 10790708



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/48 (91%), Gaps = 2/48 (4%)
 Strand = Plus / Minus

                                                                
Query: 180      gcagaccacgcactctgttgctctcacctgcaaaattggtctagtaag 227
                |||||||||||||||||||  ||||||||||||||||| || ||||||
Sbjct: 10790860 gcagaccacgcactctgtt--tctcacctgcaaaattgttcaagtaag 10790815



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 636      gtgctcgggctgcagccttcgctgcttgc 664
                |||| |||||||| |||||||||||||||
Sbjct: 10790302 gtgcacgggctgctgccttcgctgcttgc 10790274
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>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0512H04
          Length = 151049

 Score =  101 bits (51), Expect = 3e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                         
Query: 371   gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctttggcagcggggcc 430
             ||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 14408 gcccaggaccagtacgactgggctttcttcctcctcaggatcgccttcggcagcggggcc 14349

                        
Query: 431   ttggtcttggt 441
             ||| |||||||
Sbjct: 14348 ttgctcttggt 14338



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                         
Query: 261   tttccttacatcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccg 320
             ||||||| ||||||||||| | |||||| ||| ||||||||||||||||||| ||| | |
Sbjct: 14512 tttccttccatcagttgctagcgctcgctgggaggtagtactggtagtagcctagcacgg 14453

                                   
Query: 321   cgagcagggcgacgagcacggc 342
             | ||||||||||||||| ||||
Sbjct: 14452 caagcagggcgacgagcgcggc 14431



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/48 (91%), Gaps = 2/48 (4%)
 Strand = Plus / Minus

                                                             
Query: 180   gcagaccacgcactctgttgctctcacctgcaaaattggtctagtaag 227
             |||||||||||||||||||  ||||||||||||||||| || ||||||
Sbjct: 14583 gcagaccacgcactctgtt--tctcacctgcaaaattgttcaagtaag 14538



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 636   gtgctcgggctgcagccttcgctgcttgc 664
             |||| |||||||| |||||||||||||||
Sbjct: 14025 gtgcacgggctgctgccttcgctgcttgc 13997
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>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0085I16
          Length = 141701

 Score =  101 bits (51), Expect = 3e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                          
Query: 371    gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctttggcagcggggcc 430
              ||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 127303 gcccaggaccagtacgactgggctttcttcctcctcaggatcgccttcggcagcggggcc 127244

                         
Query: 431    ttggtcttggt 441
              ||| |||||||
Sbjct: 127243 ttgctcttggt 127233



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                          
Query: 261    tttccttacatcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccg 320
              ||||||| ||||||||||| | |||||| ||| ||||||||||||||||||| ||| | |
Sbjct: 127407 tttccttccatcagttgctagcgctcgctgggaggtagtactggtagtagcctagcacgg 127348

                                    
Query: 321    cgagcagggcgacgagcacggc 342
              | ||||||||||||||| ||||
Sbjct: 127347 caagcagggcgacgagcgcggc 127326



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/48 (91%), Gaps = 2/48 (4%)
 Strand = Plus / Minus

                                                              
Query: 180    gcagaccacgcactctgttgctctcacctgcaaaattggtctagtaag 227
              |||||||||||||||||||  ||||||||||||||||| || ||||||
Sbjct: 127478 gcagaccacgcactctgtt--tctcacctgcaaaattgttcaagtaag 127433



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 636    gtgctcgggctgcagccttcgctgcttgc 664
              |||| |||||||| |||||||||||||||
Sbjct: 126920 gtgcacgggctgctgccttcgctgcttgc 126892
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>dbj|AB117987.1| Oryza sativa (japonica cultivar-group) bip103 mRNA for BRI1-KD
            interacting protein 103, complete cds
          Length = 2366

 Score =  101 bits (51), Expect = 3e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                        
Query: 371  gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctttggcagcggggcc 430
            ||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 1885 gcccaggaccagtacgactgggctttcttcctcctcaggatcgccttcggcagcggggcc 1826

                       
Query: 431  ttggtcttggt 441
            ||| |||||||
Sbjct: 1825 ttgctcttggt 1815



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                        
Query: 261  tttccttacatcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccg 320
            ||||||| ||||||||||| | |||||| ||| ||||||||||||||||||| ||| | |
Sbjct: 1989 tttccttccatcagttgctagcgctcgctgggaggtagtactggtagtagcctagcacgg 1930

                                  
Query: 321  cgagcagggcgacgagcacggc 342
            | ||||||||||||||| ||||
Sbjct: 1929 caagcagggcgacgagcgcggc 1908



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/48 (91%), Gaps = 2/48 (4%)
 Strand = Plus / Minus

                                                            
Query: 180  gcagaccacgcactctgttgctctcacctgcaaaattggtctagtaag 227
            |||||||||||||||||||  ||||||||||||||||| || ||||||
Sbjct: 2060 gcagaccacgcactctgtt--tctcacctgcaaaattgttcaagtaag 2015



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 636  gtgctcgggctgcagccttcgctgcttgc 664
            |||| |||||||| |||||||||||||||
Sbjct: 1611 gtgcacgggctgctgccttcgctgcttgc 1583
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>dbj|AK100527.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101D09, full
            insert sequence
          Length = 2295

 Score =  101 bits (51), Expect = 3e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                        
Query: 371  gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctttggcagcggggcc 430
            ||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 1887 gcccaggaccagtacgactgggctttcttcctcctcaggatcgccttcggcagcggggcc 1828

                       
Query: 431  ttggtcttggt 441
            ||| |||||||
Sbjct: 1827 ttgctcttggt 1817



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                        
Query: 261  tttccttacatcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccg 320
            ||||||| ||||||||||| | |||||| ||| ||||||||||||||||||| ||| | |
Sbjct: 1991 tttccttccatcagttgctagcgctcgctgggaggtagtactggtagtagcctagcacgg 1932

                                  
Query: 321  cgagcagggcgacgagcacggc 342
            | ||||||||||||||| ||||
Sbjct: 1931 caagcagggcgacgagcgcggc 1910



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/48 (91%), Gaps = 2/48 (4%)
 Strand = Plus / Minus

                                                            
Query: 180  gcagaccacgcactctgttgctctcacctgcaaaattggtctagtaag 227
            |||||||||||||||||||  ||||||||||||||||| || ||||||
Sbjct: 2062 gcagaccacgcactctgtt--tctcacctgcaaaattgttcaagtaag 2017



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 636  gtgctcgggctgcagccttcgctgcttgc 664
            |||| |||||||| |||||||||||||||
Sbjct: 1613 gtgcacgggctgctgccttcgctgcttgc 1585
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>dbj|AK059253.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-H05, full
           insert sequence
          Length = 1352

 Score =  101 bits (51), Expect = 3e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                       
Query: 371 gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctttggcagcggggcc 430
           ||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 963 gcccaggaccagtacgactgggctttcttcctcctcaggatcgccttcggcagcggggcc 904

                      
Query: 431 ttggtcttggt 441
           ||| |||||||
Sbjct: 903 ttgctcttggt 893



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                        
Query: 261  tttccttacatcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccg 320
            ||||||| ||||||||||| | |||||| ||| ||||||||||||||||||| ||| | |
Sbjct: 1067 tttccttccatcagttgctagcgctcgctgggaggtagtactggtagtagcctagcacgg 1008

                                  
Query: 321  cgagcagggcgacgagcacggc 342
            | ||||||||||||||| ||||
Sbjct: 1007 caagcagggcgacgagcgcggc 986



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/48 (91%), Gaps = 2/48 (4%)
 Strand = Plus / Minus

                                                            
Query: 180  gcagaccacgcactctgttgctctcacctgcaaaattggtctagtaag 227
            |||||||||||||||||||  ||||||||||||||||| || ||||||
Sbjct: 1138 gcagaccacgcactctgtt--tctcacctgcaaaattgttcaagtaag 1093



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 636 gtgctcgggctgcagccttcgctgcttgc 664
           |||| |||||||| |||||||||||||||
Sbjct: 689 gtgcacgggctgctgccttcgctgcttgc 661
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>gb|AY105847.1| Zea mays PCO081230 mRNA sequence
          Length = 1699

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                        
Query: 271  tcagttgctggtgctcgccgggcggtagtactggtagtagcccagcgccgcgagcagggc 330
            |||||||||||   |||| ||| |||||||||||||||| |||||| ||||||| |||||
Sbjct: 1370 tcagttgctggcattcgctgggaggtagtactggtagtatcccagcaccgcgaggagggc 1311

                        
Query: 331  gacgagcacggc 342
             || ||||||||
Sbjct: 1310 aaccagcacggc 1299



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 371  gcccatgaccggtacgactgggctttcttcctcttcaggatcgcctt 417
            |||||||||| ||| ||||| || |||||||||||||||||||||||
Sbjct: 1276 gcccatgaccagtaggactgcgccttcttcctcttcaggatcgcctt 1230



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 201  tctcacctgcaaaattggtct 221
            |||||||||||||||||||||
Sbjct: 1440 tctcacctgcaaaattggtct 1420
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 421     cagcggggccttggtcttggtga 443
               |||||||||||||||||||||||
Sbjct: 2663170 cagcggggccttggtcttggtga 2663148
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>ref|XM_464548.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 846

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 328 ggcgacgagcacggccacggcg 349
           ||||||||||||||||||||||
Sbjct: 339 ggcgacgagcacggccacggcg 318
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 328     ggcgacgagcacggccacggcg 349
               ||||||||||||||||||||||
Sbjct: 5819104 ggcgacgagcacggccacggcg 5819125



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 144     agcttctccagtcttttcag 163
               ||||||||||||||||||||
Sbjct: 2940472 agcttctccagtcttttcag 2940491
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>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0544H11
          Length = 178376

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 328   ggcgacgagcacggccacggcg 349
             ||||||||||||||||||||||
Sbjct: 48906 ggcgacgagcacggccacggcg 48927
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>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 314   agcgccgcgagcagggcgacg 334
             |||||||||||||||||||||
Sbjct: 14231 agcgccgcgagcagggcgacg 14211
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>emb|AL022243.3|SPCC364 S.pombe chromosome III cosmid c364
          Length = 14999

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 392   gctttcttcctcttcaggatc 412
             |||||||||||||||||||||
Sbjct: 13769 gctttcttcctcttcaggatc 13749
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>ref|NM_001022836.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPCC364.01),
           partial mRNA
          Length = 963

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 392 gctttcttcctcttcaggatc 412
           |||||||||||||||||||||
Sbjct: 336 gctttcttcctcttcaggatc 356
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>ref|XM_507220.1| PREDICTED Oryza sativa (japonica cultivar-group), P0671F11.9 mRNA
          Length = 2293

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 394  tttcttcctcttcaggatcgcctt 417
            ||||||||||||||||| ||||||
Sbjct: 1858 tttcttcctcttcaggaccgcctt 1835
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>ref|XM_482186.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2281

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 394  tttcttcctcttcaggatcgcctt 417
            ||||||||||||||||| ||||||
Sbjct: 1893 tttcttcctcttcaggaccgcctt 1870
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>gb|AY756174.4| Oryza rufipogon putative leucine-rich repeat receptor-like kinases and
             ternary complex factor MIP1-like genes, complete cds;
             retrotransposon putative membrane-associated protein and
             gag-pol precursor, pseudogenes, complete sequence; and
             unknown genes
          Length = 102522

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   agcttctccagtcttttcag 163
             ||||||||||||||||||||
Sbjct: 44105 agcttctccagtcttttcag 44086
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 210      caaaattggtctagtaagattcat 233
                |||||||| |||||||||||||||
Sbjct: 12464532 caaaattgctctagtaagattcat 12464555
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>gb|AC134885.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1125B03,
              from chromosome 3, complete sequence
          Length = 124550

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 210    caaaattggtctagtaagattcat 233
              |||||||| |||||||||||||||
Sbjct: 123409 caaaattgctctagtaagattcat 123386
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>emb|AL080312.14|HSJ1025A1 Human DNA sequence from clone RP5-1025A1 on chromosome 20p11.21-11.23
             Contains the 5' part of the ACAS2L gene for
             acetyl-Coenzyme A synthetase (AMP forming)-like, the VSX1
             gene for visual system homeobox 1 (zebrafish) homolog
             (CHX10-like), variants L1 and S1 and four CpG islands,
             complete sequence
          Length = 94664

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   gttgctctcacctgcaaaat 215
             ||||||||||||||||||||
Sbjct: 56474 gttgctctcacctgcaaaat 56455
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>emb|AL035667.12|HS805C22 Human DNA sequence from clone RP4-805C22 on chromosome 20q13.2-13.32
             Contains the 3' end of the gene for downstream of tyrosine
             kinase 5 (DOK5) protein, complete sequence
          Length = 135391

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 464   ttctgcttctgttctttgttcaat 487
             ||||||||||||||||| ||||||
Sbjct: 13607 ttctgcttctgttcttttttcaat 13630
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 301     ctggtagtagcccagcgccg 320
               ||||||||||||||||||||
Sbjct: 2771610 ctggtagtagcccagcgccg 2771591
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>emb|CR391977.5| Zebrafish DNA sequence from clone DKEYP-73B11 in linkage group 25,
              complete sequence
          Length = 189510

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 388    ctgggctttcttcctcttcaggat 411
              ||||||||||||||| ||||||||
Sbjct: 164613 ctgggctttcttccttttcaggat 164636
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>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14,
              complete sequence
          Length = 132560

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 210    caaaattggtctagtaagattcat 233
              |||||||| |||||||||||||||
Sbjct: 122214 caaaattgctctagtaagattcat 122237
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 274    gttgctggtgctcgccgggc 293
              ||||||||||||||||||||
Sbjct: 251688 gttgctggtgctcgccgggc 251669
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 317     gccgcgagcagggcgacgagcacg 340
               ||||||||||| ||||||||||||
Sbjct: 1908821 gccgcgagcagcgcgacgagcacg 1908844
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>gb|AC093414.3| Homo sapiens chromosome 3 clone RP11-193I22, complete sequence
          Length = 185511

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    gagttactggcagtacaagt 61
             ||||||||||||||||||||
Sbjct: 39719 gagttactggcagtacaagt 39700
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>gb|AC018616.5|AC018616 Homo sapiens chromosome 8, clone RP11-157I4, complete sequence
          Length = 165948

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    accaaaattaactgcaactt 104
             ||||||||||||||||||||
Sbjct: 30150 accaaaattaactgcaactt 30131
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>emb|BX323880.7| Zebrafish DNA sequence from clone CH211-139K8 in linkage group 2,
              complete sequence
          Length = 166870

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    tttccttacatcagttgctg 280
              ||||||||||||||||||||
Sbjct: 111530 tttccttacatcagttgctg 111511
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 394      tttcttcctcttcaggatcgcctt 417
                ||||||||||||||||| ||||||
Sbjct: 18473105 tttcttcctcttcaggaccgcctt 18473082
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 210      caaaattggtctagtaagattcat 233
                |||||||| |||||||||||||||
Sbjct: 18561772 caaaattgctctagtaagattcat 18561795
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 210      caaaattggtctagtaagattcat 233
                |||||||| |||||||||||||||
Sbjct: 12461295 caaaattgctctagtaagattcat 12461318
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>gb|AC018690.5| Homo sapiens BAC clone RP11-527J8 from 2, complete sequence
          Length = 233117

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 260    ttttccttacatcagttgct 279
              ||||||||||||||||||||
Sbjct: 181477 ttttccttacatcagttgct 181458
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>gb|AC137935.2| Homo sapiens chromosome 3 clone RP11-626A1, complete sequence
          Length = 175912

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     gagttactggcagtacaagt 61
              ||||||||||||||||||||
Sbjct: 164212 gagttactggcagtacaagt 164193
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 323     agcagggcgacgagcacggc 342
               ||||||||||||||||||||
Sbjct: 3123448 agcagggcgacgagcacggc 3123467
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>gb|AC007395.3|AC007395 Homo sapiens BAC clone RP11-504O1 from 2, complete sequence
          Length = 158458

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    attctcactttaaagtacaa 39
             ||||||||||||||||||||
Sbjct: 82432 attctcactttaaagtacaa 82413
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>gb|AC063945.16| Homo sapiens 12 BAC RP11-417A9 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 32993

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 113  actccacccaacaaacagaa 132
            ||||||||||||||||||||
Sbjct: 1150 actccacccaacaaacagaa 1169
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>gb|AC068642.25| Homo sapiens 12 BAC RP11-328J6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 59907

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   actccacccaacaaacagaa 132
             ||||||||||||||||||||
Sbjct: 59052 actccacccaacaaacagaa 59071
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>dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0005E02
          Length = 89380

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 210   caaaattggtctagtaagattcat 233
             |||||||| |||||||||||||||
Sbjct: 14314 caaaattgctctagtaagattcat 14337
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>dbj|AP007224.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0463E12
          Length = 161081

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   agcttctccagtcttttcag 163
             ||||||||||||||||||||
Sbjct: 66111 agcttctccagtcttttcag 66130
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>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1457_D07
          Length = 103688

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 210   caaaattggtctagtaagattcat 233
             |||||||| |||||||||||||||
Sbjct: 90528 caaaattgctctagtaagattcat 90551
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>dbj|AB117988.1| Oryza sativa (japonica cultivar-group) bip131 mRNA for BRI1-KD
            interacting protein 131, complete cds
          Length = 2275

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 394  tttcttcctcttcaggatcgcctt 417
            ||||||||||||||||| ||||||
Sbjct: 1864 tttcttcctcttcaggaccgcctt 1841
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>dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0671F11
          Length = 159409

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 394   tttcttcctcttcaggatcgcctt 417
             ||||||||||||||||| ||||||
Sbjct: 55128 tttcttcctcttcaggaccgcctt 55105
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>dbj|AK111680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013168E03, full
           insert sequence
          Length = 3393

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 144 agcttctccagtcttttcag 163
           ||||||||||||||||||||
Sbjct: 965 agcttctccagtcttttcag 946
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>dbj|AK099893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013113F23, full
            insert sequence
          Length = 2281

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 394  tttcttcctcttcaggatcgcctt 417
            ||||||||||||||||| ||||||
Sbjct: 1893 tttcttcctcttcaggaccgcctt 1870
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>dbj|AK067513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110G07, full
            insert sequence
          Length = 2293

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 394  tttcttcctcttcaggatcgcctt 417
            ||||||||||||||||| ||||||
Sbjct: 1858 tttcttcctcttcaggaccgcctt 1835
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 327   gggcgacgagcacggccacg 346
             ||||||||||||||||||||
Sbjct: 10389 gggcgacgagcacggccacg 10370
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>gb|AF031882.1|AF031882 Euprymna morsei internal transcribed spacer region
          Length = 1285

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 316  cgccgcgagcagggcgacgagcacggcc 343
            |||| ||||||| |||||||||||||||
Sbjct: 991  cgcctcgagcagcgcgacgagcacggcc 1018
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>gb|AF031881.1|AF031881 Euprymna scolopes internal transcribed spacer region
          Length = 1359

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 316  cgccgcgagcagggcgacgagcacggcc 343
            |||| ||||||| |||||||||||||||
Sbjct: 1069 cgcctcgagcagcgcgacgagcacggcc 1096


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,272,873
Number of Sequences: 3902068
Number of extensions: 5272873
Number of successful extensions: 106784
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106063
Number of HSP's gapped (non-prelim): 715
length of query: 664
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 641
effective length of database: 17,143,297,704
effective search space: 10988853828264
effective search space used: 10988853828264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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