ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OREX_HUMAN (O43612) Orexin precursor (Hypocretin) (Hcrt) [Contai... 28 6.6
2SWF1_NEUCR (Q7RWM9) Palmitoyltransferase SWF1 (EC 2.3.1.-) 28 6.6

>OREX_HUMAN (O43612) Orexin precursor (Hypocretin) (Hcrt) [Contains: Orexin-A|
           (Hypocretin-1) (Hcrt1); Orexin-B (Hypocretin-2) (Hcrt2)]
          Length = 131

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
 Frame = +2

Query: 263 LHGASNHQLGILGMLRFING--------ELIVRSITSHAMGCCSGALADRTPPSPRP 409
           LHGA NH  GIL + +  +G        + ++++  +HA G  +        P+PRP
Sbjct: 53  LHGAGNHAAGILTLGKRRSGPPGLQGRLQRLLQASGNHAAGILTMGRRAGAEPAPRP 109



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>SWF1_NEUCR (Q7RWM9) Palmitoyltransferase SWF1 (EC 2.3.1.-)|
          Length = 429

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 205 LDVIYDRAMLDAR*CFSPLIAWSIKSSTWNLGYASVHQW 321
           L ++  RA + AR  +  L+ W   +  WN G    H+W
Sbjct: 218 LGLVIIRAKIQARFPYWTLMPWWTSTQAWNSGDLDFHRW 256


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,214,678
Number of Sequences: 219361
Number of extensions: 894160
Number of successful extensions: 1788
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1787
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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