| Clone Name | rbags31g17 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK069777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026G02, full insert sequence Length = 795 Score = 337 bits (170), Expect = 2e-89 Identities = 329/382 (86%) Strand = Plus / Minus Query: 215 tctactcgacgccctcggcggatctctggatgagcacggcggccagggtgatggcggagg 274 |||||||||||||||||| |||| ||||| | ||| || | ||||||||| |||||| Sbjct: 605 tctactcgacgccctcggtggatttctgggccatgacgacgccgagggtgatgacggagg 546 Query: 275 cgtagatggcattgggcaccttgtgcactaccttgccgacgccggggacgccctcggttg 334 ||||||||| |||||||||||| |||| ||| ||||||||||||| |||||||| || | Sbjct: 545 cgtagatggagttgggcaccttgcgcaccaccctgccgacgccgggcacgccctccgtcg 486 Query: 335 cccttttggtcgccagcgccagcgcaggggcggcgaccagcgtgatgatcagcttgaggc 394 |||| |||||||||||||||||||| || || || |||||||| | | |||||||| || Sbjct: 485 ccctcttggtcgccagcgccagcgccggcgccgccaccagcgtcaccagcagcttgaagc 426 Query: 395 tgatcgcacagagtgactcggcggtcagcttccggatgaactccgcaaactcctcacggt 454 ||||||| || || ||||| || ||||||||||||||||||||||| |||||||| |||| Sbjct: 425 tgatcgcgcacagcgactccgccgtcagcttccggatgaactccgcgaactcctcccggt 366 Query: 455 ccaggagaccgttcatgtcaatgtcaaactcattcatgagagccttgagcctctccttgg 514 ||||||| |||| || || ||||| |||||||||| | ||||||||| ||||||||| Sbjct: 365 ccaggagcccgtccaggttgatgtcgtactcattcatcatggccttgagcttctccttgg 306 Query: 515 acggggggtcgtagtgcggccccggcaagtacttgttgatgtcgttgtagacgcagagga 574 | || || || ||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 305 agggcggatcatagtgcggccctggtaagtacttgttgatgtcgttgtagacgcagagga 246 Query: 575 cggcgatgtagacctcctcgaa 596 |||||||||||||||||||||| Sbjct: 245 cggcgatgtagacctcctcgaa 224
>ref|XM_473766.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 519 Score = 335 bits (169), Expect = 1e-88 Identities = 328/381 (86%) Strand = Plus / Minus Query: 216 ctactcgacgccctcggcggatctctggatgagcacggcggccagggtgatggcggaggc 275 ||||||||||||||||| |||| ||||| | ||| || | ||||||||| ||||||| Sbjct: 519 ctactcgacgccctcggtggatttctgggccatgacgacgccgagggtgatgacggaggc 460 Query: 276 gtagatggcattgggcaccttgtgcactaccttgccgacgccggggacgccctcggttgc 335 |||||||| |||||||||||| |||| ||| ||||||||||||| |||||||| || || Sbjct: 459 gtagatggagttgggcaccttgcgcaccaccctgccgacgccgggcacgccctccgtcgc 400 Query: 336 ccttttggtcgccagcgccagcgcaggggcggcgaccagcgtgatgatcagcttgaggct 395 ||| |||||||||||||||||||| || || || |||||||| | | |||||||| ||| Sbjct: 399 cctcttggtcgccagcgccagcgccggcgccgccaccagcgtcaccagcagcttgaagct 340 Query: 396 gatcgcacagagtgactcggcggtcagcttccggatgaactccgcaaactcctcacggtc 455 |||||| || || ||||| || ||||||||||||||||||||||| |||||||| ||||| Sbjct: 339 gatcgcgcacagcgactccgccgtcagcttccggatgaactccgcgaactcctcccggtc 280 Query: 456 caggagaccgttcatgtcaatgtcaaactcattcatgagagccttgagcctctccttgga 515 |||||| |||| || || ||||| |||||||||| | ||||||||| |||||||||| Sbjct: 279 caggagcccgtccaggttgatgtcgtactcattcatcatggccttgagcttctccttgga 220 Query: 516 cggggggtcgtagtgcggccccggcaagtacttgttgatgtcgttgtagacgcagaggac 575 || || || ||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 219 gggcggatcatagtgcggccctggtaagtacttgttgatgtcgttgtagacgcagaggac 160 Query: 576 ggcgatgtagacctcctcgaa 596 ||||||||||||||||||||| Sbjct: 159 ggcgatgtagacctcctcgaa 139
>gb|AY106925.1| Zea mays PCO125905 mRNA sequence Length = 787 Score = 323 bits (163), Expect = 4e-85 Identities = 325/379 (85%) Strand = Plus / Minus Query: 218 actcgacgccctcggcggatctctggatgagcacggcggccagggtgatggcggaggcgt 277 ||||||||||||||| |||||||| | ||||| || ||||||||||||||||||||| Sbjct: 536 actcgacgccctcggttgatctctgcaacagcacaacgcccagggtgatggcggaggcgt 477 Query: 278 agatggcattgggcaccttgtgcactaccttgccgacgccggggacgccctcggttgccc 337 ||| || |||||||||||| | || |||||||| ||||||||||||||||| || |||| Sbjct: 476 agagcgcgttgggcaccttgcgtaccaccttgcccacgccggggacgccctccgtcgccc 417 Query: 338 ttttggtcgccagcgccagcgcaggggcggcgaccagcgtgatgatcagcttgaggctga 397 |||||||||| ||||||||| || || || ||||||||||| | |||||| | ||||| Sbjct: 416 gcttggtcgccatcgccagcgccggcgccgccaccagcgtgatcagcagcttcacgctga 357 Query: 398 tcgcacagagtgactcggcggtcagcttccggatgaactccgcaaactcctcacggtcca 457 ||| || || || || |||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 356 tcgagcacagcgagtccgcggtcagcttccggatgaactccgcgaactcctcgcggtcca 297 Query: 458 ggagaccgttcatgtcaatgtcaaactcattcatgagagccttgagcctctccttggacg 517 |||| |||| || || | ||| |||| | ||| | ||| ||||| |||||||||||| Sbjct: 296 ggagcccgtccaggttcacgtcgtactcctccatcatggccctgagcttctccttggacg 237 Query: 518 gggggtcgtagtgcggccccggcaagtacttgttgatgtcgttgtagacgcagaggacgg 577 ||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct: 236 gggggtcgtggtgcggccccggcaagtacttattgatgtcattgtagacgcagaggacgg 177 Query: 578 cgatgtagacctcctcgaa 596 ||||||||||||||||||| Sbjct: 176 cgatgtagacctcctcgaa 158
>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence Length = 166804 Score = 206 bits (104), Expect = 6e-50 Identities = 215/252 (85%) Strand = Plus / Plus Query: 215 tctactcgacgccctcggcggatctctggatgagcacggcggccagggtgatggcggagg 274 |||||||||||||||||| |||| ||||| | ||| || | ||||||||| |||||| Sbjct: 29589 tctactcgacgccctcggtggatttctgggccatgacgacgccgagggtgatgacggagg 29648 Query: 275 cgtagatggcattgggcaccttgtgcactaccttgccgacgccggggacgccctcggttg 334 ||||||||| |||||||||||| |||| ||| ||||||||||||| |||||||| || | Sbjct: 29649 cgtagatggagttgggcaccttgcgcaccaccctgccgacgccgggcacgccctccgtcg 29708 Query: 335 cccttttggtcgccagcgccagcgcaggggcggcgaccagcgtgatgatcagcttgaggc 394 |||| |||||||||||||||||||| || || || |||||||| | | |||||||| || Sbjct: 29709 ccctcttggtcgccagcgccagcgccggcgccgccaccagcgtcaccagcagcttgaagc 29768 Query: 395 tgatcgcacagagtgactcggcggtcagcttccggatgaactccgcaaactcctcacggt 454 ||||||| || || ||||| || ||||||||||||||||||||||| |||||||| |||| Sbjct: 29769 tgatcgcgcacagcgactccgccgtcagcttccggatgaactccgcgaactcctcccggt 29828 Query: 455 ccaggagaccgt 466 ||||||| |||| Sbjct: 29829 ccaggagcccgt 29840 Score = 75.8 bits (38), Expect = 1e-10 Identities = 38/38 (100%) Strand = Plus / Plus Query: 559 ttgtagacgcagaggacggcgatgtagacctcctcgaa 596 |||||||||||||||||||||||||||||||||||||| Sbjct: 30657 ttgtagacgcagaggacggcgatgtagacctcctcgaa 30694 Score = 69.9 bits (35), Expect = 9e-09 Identities = 56/63 (88%) Strand = Plus / Plus Query: 496 gccttgagcctctccttggacggggggtcgtagtgcggccccggcaagtacttgttgatg 555 ||||||||| |||||||||| || || || ||||||||||| || ||||||||||||||| Sbjct: 30502 gccttgagcttctccttggagggcggatcatagtgcggccctggtaagtacttgttgatg 30561 Query: 556 tcg 558 ||| Sbjct: 30562 tcg 30564
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 206 bits (104), Expect = 6e-50 Identities = 215/252 (85%) Strand = Plus / Plus Query: 215 tctactcgacgccctcggcggatctctggatgagcacggcggccagggtgatggcggagg 274 |||||||||||||||||| |||| ||||| | ||| || | ||||||||| |||||| Sbjct: 30396211 tctactcgacgccctcggtggatttctgggccatgacgacgccgagggtgatgacggagg 30396270 Query: 275 cgtagatggcattgggcaccttgtgcactaccttgccgacgccggggacgccctcggttg 334 ||||||||| |||||||||||| |||| ||| ||||||||||||| |||||||| || | Sbjct: 30396271 cgtagatggagttgggcaccttgcgcaccaccctgccgacgccgggcacgccctccgtcg 30396330 Query: 335 cccttttggtcgccagcgccagcgcaggggcggcgaccagcgtgatgatcagcttgaggc 394 |||| |||||||||||||||||||| || || || |||||||| | | |||||||| || Sbjct: 30396331 ccctcttggtcgccagcgccagcgccggcgccgccaccagcgtcaccagcagcttgaagc 30396390 Query: 395 tgatcgcacagagtgactcggcggtcagcttccggatgaactccgcaaactcctcacggt 454 ||||||| || || ||||| || ||||||||||||||||||||||| |||||||| |||| Sbjct: 30396391 tgatcgcgcacagcgactccgccgtcagcttccggatgaactccgcgaactcctcccggt 30396450 Query: 455 ccaggagaccgt 466 ||||||| |||| Sbjct: 30396451 ccaggagcccgt 30396462 Score = 75.8 bits (38), Expect = 1e-10 Identities = 38/38 (100%) Strand = Plus / Plus Query: 559 ttgtagacgcagaggacggcgatgtagacctcctcgaa 596 |||||||||||||||||||||||||||||||||||||| Sbjct: 30397279 ttgtagacgcagaggacggcgatgtagacctcctcgaa 30397316 Score = 69.9 bits (35), Expect = 9e-09 Identities = 56/63 (88%) Strand = Plus / Plus Query: 496 gccttgagcctctccttggacggggggtcgtagtgcggccccggcaagtacttgttgatg 555 ||||||||| |||||||||| || || || ||||||||||| || ||||||||||||||| Sbjct: 30397124 gccttgagcttctccttggagggcggatcatagtgcggccctggtaagtacttgttgatg 30397183 Query: 556 tcg 558 ||| Sbjct: 30397184 tcg 30397186
>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12, complete sequence Length = 160989 Score = 206 bits (104), Expect = 6e-50 Identities = 215/252 (85%) Strand = Plus / Plus Query: 215 tctactcgacgccctcggcggatctctggatgagcacggcggccagggtgatggcggagg 274 |||||||||||||||||| |||| ||||| | ||| || | ||||||||| |||||| Sbjct: 146107 tctactcgacgccctcggtggatttctgggccatgacgacgccgagggtgatgacggagg 146166 Query: 275 cgtagatggcattgggcaccttgtgcactaccttgccgacgccggggacgccctcggttg 334 ||||||||| |||||||||||| |||| ||| ||||||||||||| |||||||| || | Sbjct: 146167 cgtagatggagttgggcaccttgcgcaccaccctgccgacgccgggcacgccctccgtcg 146226 Query: 335 cccttttggtcgccagcgccagcgcaggggcggcgaccagcgtgatgatcagcttgaggc 394 |||| |||||||||||||||||||| || || || |||||||| | | |||||||| || Sbjct: 146227 ccctcttggtcgccagcgccagcgccggcgccgccaccagcgtcaccagcagcttgaagc 146286 Query: 395 tgatcgcacagagtgactcggcggtcagcttccggatgaactccgcaaactcctcacggt 454 ||||||| || || ||||| || ||||||||||||||||||||||| |||||||| |||| Sbjct: 146287 tgatcgcgcacagcgactccgccgtcagcttccggatgaactccgcgaactcctcccggt 146346 Query: 455 ccaggagaccgt 466 ||||||| |||| Sbjct: 146347 ccaggagcccgt 146358 Score = 75.8 bits (38), Expect = 1e-10 Identities = 38/38 (100%) Strand = Plus / Plus Query: 559 ttgtagacgcagaggacggcgatgtagacctcctcgaa 596 |||||||||||||||||||||||||||||||||||||| Sbjct: 147175 ttgtagacgcagaggacggcgatgtagacctcctcgaa 147212 Score = 69.9 bits (35), Expect = 9e-09 Identities = 56/63 (88%) Strand = Plus / Plus Query: 496 gccttgagcctctccttggacggggggtcgtagtgcggccccggcaagtacttgttgatg 555 ||||||||| |||||||||| || || || ||||||||||| || ||||||||||||||| Sbjct: 147020 gccttgagcttctccttggagggcggatcatagtgcggccctggtaagtacttgttgatg 147079 Query: 556 tcg 558 ||| Sbjct: 147080 tcg 147082
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 251 cggcggccagggtgatggcggaggcg 276 |||||||||||||||||| ||||||| Sbjct: 1053285 cggcggccagggtgatggtggaggcg 1053260
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 350 gcgccagcgcaggggcggcga 370 ||||||||||||||||||||| Sbjct: 66927 gcgccagcgcaggggcggcga 66907
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 cgtgatgatcagcttgaggct 395 ||||||||||||||||||||| Sbjct: 1457287 cgtgatgatcagcttgaggct 1457307
>emb|BX276177.6| Zebrafish DNA sequence from clone CH211-223M11 in linkage group 20, complete sequence Length = 202340 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 cacatcacatttacaacccca 163 ||||||||||||||||||||| Sbjct: 10289 cacatcacatttacaacccca 10309
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 cttgccgacgccggggacgcc 326 ||||||||||||||||||||| Sbjct: 2217136 cttgccgacgccggggacgcc 2217116
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 491 tgagagccttgagcctctccttgg 514 |||| ||||||||||||||||||| Sbjct: 3976020 tgagggccttgagcctctccttgg 3975997
>ref|XM_866959.1| PREDICTED: Bos taurus similar to aldehyde dehydrogenase 3A2 isoform 1, transcript variant 2 (LOC513967), mRNA Length = 3087 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 238 ctctggatgagcacggcggccagg 261 |||| ||||||||||||||||||| Sbjct: 1445 ctcttgatgagcacggcggccagg 1422
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 ttggtcgccagcgccagcgc 359 |||||||||||||||||||| Sbjct: 2803321 ttggtcgccagcgccagcgc 2803340
>ref|XM_742216.1| Aspergillus fumigatus Af293 hypothetical protein (Afu8g05040) partial mRNA Length = 951 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ctaccttgccgacgccgggg 321 |||||||||||||||||||| Sbjct: 123 ctaccttgccgacgccgggg 142
>ref|XM_390010.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09834.1) partial mRNA Length = 1713 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 547 ttgttgatgtcgttgtagac 566 |||||||||||||||||||| Sbjct: 1490 ttgttgatgtcgttgtagac 1471
>emb|Z66565.1|CET04F8 Caenorhabditis elegans Cosmid T04F8, complete sequence Length = 37872 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 aagtacttgttgatgtcgtt 560 |||||||||||||||||||| Sbjct: 12706 aagtacttgttgatgtcgtt 12687
>emb|CR726439.2|CNS0GNGT Tetraodon nigroviridis full-length cDNA Length = 965 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 tcattcatgagagccttgag 503 |||||||||||||||||||| Sbjct: 826 tcattcatgagagccttgag 845
>emb|CR693357.2|CNS0FXY1 Tetraodon nigroviridis full-length cDNA Length = 980 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 tcattcatgagagccttgag 503 |||||||||||||||||||| Sbjct: 842 tcattcatgagagccttgag 861
>emb|CR685910.2|CNS0FS76 Tetraodon nigroviridis full-length cDNA Length = 1008 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 tcattcatgagagccttgag 503 |||||||||||||||||||| Sbjct: 870 tcattcatgagagccttgag 889
>emb|CR673307.2|CNS0FIHT Tetraodon nigroviridis full-length cDNA Length = 974 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 tcattcatgagagccttgag 503 |||||||||||||||||||| Sbjct: 852 tcattcatgagagccttgag 871
>gb|AC147964.10| Medicago truncatula clone mth2-5i18, complete sequence Length = 134939 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 tgtcaaactcattcatgaga 495 |||||||||||||||||||| Sbjct: 118021 tgtcaaactcattcatgaga 118040
>emb|BX901885.7| Human DNA sequence from clone WI2-81939E3 on chromosome X Contains the 5' end of the IL3RA gene for interleukin 3 receptor alpha (low affinity), complete sequence Length = 34516 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 acatcacatttacaacccca 163 |||||||||||||||||||| Sbjct: 22471 acatcacatttacaacccca 22490
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 ctactcgacgccctcggcgg 235 |||||||||||||||||||| Sbjct: 1759407 ctactcgacgccctcggcgg 1759426
>emb|AL137078.20| Human DNA sequence from clone RP1-66N13 on chromosome 20 Contains a novel gene (LOC284749) and two novel genes, complete sequence Length = 80725 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 agtcccacagggcatcacct 128 |||||||||||||||||||| Sbjct: 51452 agtcccacagggcatcacct 51471
>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16 Length = 345012 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 ggcggcgaccagcgtgatga 382 |||||||||||||||||||| Sbjct: 71206 ggcggcgaccagcgtgatga 71187
>emb|BX296563.3| Human DNA sequence from clone RP11-18M14 on chromosome X Contains the 5' end of the IL3RA gene for interleukin 3 receptor, alpha (low affinity) (IL3R, CD123, IL3RX, IL3RY, IL3RAY, hIL-3Ra, MGC34174), complete sequence Length = 21008 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 acatcacatttacaacccca 163 |||||||||||||||||||| Sbjct: 8815 acatcacatttacaacccca 8834 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 acatcacatttacaacccca 163 |||||||||||||||||||| Sbjct: 5963 acatcacatttacaacccca 5982
>gb|AC122707.2| Homo sapiens chromosome 5 clone RP11-158J3, complete sequence Length = 180483 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 caaatcacatcacatttaca 157 |||||||||||||||||||| Sbjct: 46948 caaatcacatcacatttaca 46929
>gb|AC091885.2| Homo sapiens chromosome 5 clone RP11-116O11, complete sequence Length = 167297 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 tacagaaaaaatacaagtcc 113 |||||||||||||||||||| Sbjct: 155776 tacagaaaaaatacaagtcc 155757
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 agcacggcggccagggtgatggcg 270 |||||| ||||||||||||||||| Sbjct: 4082658 agcacgccggccagggtgatggcg 4082635 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 gcacggcggccagggtgatg 267 |||||||||||||||||||| Sbjct: 753981 gcacggcggccagggtgatg 754000
>gb|AC150261.6| Aedes aegypti, clone XX-54F19, complete sequence Length = 90619 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 473 caatgtcaaactcattcatg 492 |||||||||||||||||||| Sbjct: 49847 caatgtcaaactcattcatg 49828
>gb|AC007743.3| Homo sapiens BAC clone RP11-481J13 from 2, complete sequence Length = 141836 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 aaactcattcatgagagcct 499 |||||||||||||||||||| Sbjct: 139250 aaactcattcatgagagcct 139231
>gb|AE004837.1| Pseudomonas aeruginosa PAO1, section 398 of 529 of the complete genome Length = 10357 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 cacggcggccagggtgatgg 268 |||||||||||||||||||| Sbjct: 5746 cacggcggccagggtgatgg 5727
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 cggccagggtgatggcggag 273 |||||||||||||||||||| Sbjct: 986987 cggccagggtgatggcggag 987006
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 306 cttgccgacgccggggacgccctc 329 ||||||||||||||||||| |||| Sbjct: 2183323 cttgccgacgccggggacgtcctc 2183300
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 cttcttctactcgacgccctcggc 233 |||||| ||||||||||||||||| Sbjct: 1122324 cttcttgtactcgacgccctcggc 1122301 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,182,524 Number of Sequences: 3902068 Number of extensions: 4182524 Number of successful extensions: 83807 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82931 Number of HSP's gapped (non-prelim): 875 length of query: 596 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 573 effective length of database: 17,143,297,704 effective search space: 9823109584392 effective search space used: 9823109584392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)