Clone Information

BLAST Search Result

Clone Name	rbags31g14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|BT009374.1\| Triticum aestivum clone wlm96.pk029.g10:fis, full...	900	0.0
2	dbj\|AK059666.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	357	3e-95
3	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	319	7e-84
4	dbj\|AP005609.3\| Oryza sativa (japonica cultivar-group) genomic D...	319	7e-84
5	gb\|AY110231.1\| Zea mays CL852_1 mRNA sequence	170	4e-39
6	gb\|BT018195.1\| Zea mays clone EL01N0559C12.c mRNA sequence	165	2e-37
7	ref\|NM_125737.3\| Arabidopsis thaliana EMB2746; catalytic AT5G634...	50	0.010
8	dbj\|AK221272.1\| Arabidopsis thaliana mRNA for putative protein, ...	50	0.010
9	gb\|BT004210.1\| Arabidopsis thaliana clone RAFL16-01-C03 (R50172)...	50	0.010
10	dbj\|AK176547.1\| Arabidopsis thaliana mRNA for putative protein, ...	50	0.010
11	gb\|AC126782.23\| Medicago truncatula clone mth2-14p11, complete s...	48	0.040
12	ref\|XM_420305.1\| PREDICTED: Gallus gallus similar to transcripti...	42	2.5
13	gb\|AC146144.2\| Pan troglodytes BAC clone RP43-37J17 from 7, comp...	42	2.5
14	emb\|BX537139.17\| Zebrafish DNA sequence from clone DKEY-46K9 in ...	42	2.5
15	gb\|AC108142.3\| Homo sapiens BAC clone RP11-402C9 from 4, complet...	42	2.5
16	gb\|AC098864.3\| Homo sapiens BAC clone RP11-359L10 from 4, comple...	42	2.5
17	dbj\|AB025628.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	42	2.5
18	dbj\|AP006202.1\| Homo sapiens genomic DNA, chromosome 7, clone:CT...	42	2.5
19	gb\|AC166114.5\| Mus musculus BAC clone RP23-63J20 from chromosome...	40	9.7
20	gb\|AC005740.1\| Homo sapiens chromosome 5p, BAC clone 50g21 (LBNL...	40	9.7
21	gb\|AC124993.19\| Mus musculus chromosome 15, clone RP23-150J21, c...	40	9.7
22	gb\|AF165424.6\| Homo sapiens chromosome 8 clone CTB-402F2 map q21...	40	9.7
23	gb\|AC127560.4\| Mus musculus BAC clone RP24-267I18 from chromosom...	40	9.7
24	gb\|AF091137.1\| Trichosurus vulpecula polymeric-immunoglobulin re...	40	9.7
25	ref\|XM_665916.1\| Plasmodium berghei strain ANKA hypothetical pro...	40	9.7
26	gb\|AC136712.9\| Mus musculus chromosome 3, clone RP23-36H15, comp...	40	9.7
27	emb\|CR407581.9\| Zebrafish DNA sequence from clone DKEY-17A16 in ...	40	9.7
28	emb\|Z97055.1\|HS388M5 Human DNA sequence from clone RP3-388M5 on ...	40	9.7
29	emb\|AL356486.12\| Human DNA sequence from clone RP11-721F14 on ch...	40	9.7
30	gb\|AC069233.16\| Homo sapiens 3 BAC RP11-95H16 (Roswell Park Canc...	40	9.7
31	gb\|AC157360.9\| Mus musculus chromosome 8, clone RP23-420E22, com...	40	9.7
32	gb\|DQ397580.1\| Cenarchaeum symbiosum clone C18D02, complete sequ...	40	9.7
33	gb\|DQ397569.1\| Cenarchaeum symbiosum clone C07D08, complete sequ...	40	9.7
34	gb\|AC103760.2\| Homo sapiens chromosome 8, clone CTD-2284J15, com...	40	9.7
35	gb\|AC098933.2\| Homo sapiens chromosome 1 clone RP11-417N7, compl...	40	9.7
36	gb\|AC011366.6\| Homo sapiens chromosome 5 clone CTC-568L21, compl...	40	9.7
37	dbj\|AK156138.1\| Mus musculus activated spleen cDNA, RIKEN full-l...	40	9.7
38	gb\|AC018711.4\| Homo sapiens BAC clone RP11-324K4 from 1, complet...	40	9.7
39	gb\|AC092272.2\| Homo sapiens chromosome 5 clone CTC-339E17, compl...	40	9.7
40	gb\|AY014830.1\| Mus musculus lysyl hydroxylase 3 (Plod3) gene, co...	40	9.7
41	gb\|AC093422.3\| Homo sapiens chromosome 1 clone RP11-383G10, comp...	40	9.7
42	dbj\|AK049528.1\| Mus musculus 7 days embryo whole body cDNA, RIKE...	40	9.7
43	emb\|BX465866.13\| Mouse DNA sequence from clone RP23-128L16 on ch...	40	9.7
44	gb\|AC026756.15\|AC026756 Homo sapiens chromosome 13 clone RP11-28...	40	9.7
45	gb\|AC007883.3\| Homo sapiens BAC clone RP11-508L23 from 2, comple...	40	9.7
46	gb\|AC010974.9\| Homo sapiens BAC clone RP11-159N20 from 2, comple...	40	9.7
47	gb\|AC008844.5\|AC008844 Homo sapiens chromosome 5 clone CTD-2157L...	40	9.7
48	emb\|BX548065.6\| Mouse DNA sequence from clone RP23-163B21 on chr...	40	9.7
49	gb\|AC154199.2\| Mus musculus BAC clone RP24-396N5 from 13, comple...	40	9.7
50	gb\|AC154529.2\| Mus musculus BAC clone RP23-463N16 from 16, compl...	40	9.7
51	emb\|CT571254.7\| Mouse DNA sequence from clone RP23-335F6 on chro...	40	9.7
52	emb\|CT025645.16\| Mouse DNA sequence from clone RP23-233D21 on ch...	40	9.7
53	emb\|AL929548.8\| Zebrafish DNA sequence from clone CH211-159E17, ...	40	9.7
54	gb\|AC147987.5\| Mus musculus BAC clone RP24-456B4 from 5, complet...	40	9.7
55	gb\|AC147986.3\| Mus musculus BAC clone RP24-404L1 from 5, complet...	40	9.7
56	emb\|AJ879075.1\| Uncultured bacterium adh gene, ORF1, ORF2 and ORF3	40	9.7
57	gb\|AC123661.22\| Mus musculus chromosome 5, clone RP23-211E12, co...	40	9.7
58	gb\|AC124325.10\| Mus musculus chromosome 7, clone RP24-462O14, co...	40	9.7
59	dbj\|AP001578.3\| Homo sapiens genomic DNA, chromosome 6q25.2, clo...	40	9.7

>gb|BT009374.1| Triticum aestivum clone wlm96.pk029.g10:fis, full insert mRNA
            sequence
          Length = 1635

 Score =  900 bits (454), Expect = 0.0
 Identities = 621/673 (92%), Gaps = 9/673 (1%)
 Strand = Plus / Minus

                                                                        
Query: 48   acaacatggtagactggtaaacctagttt-acttaactaccccaggcatctcatgcaatg 106
            |||||||||| || ||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 1426 acaacatggtggattggtaaacctagtttcacttaactaccccaagcatctcatgcaatg 1367

                                                                        
Query: 107  gcaaagaatgatacgaagcgattacttcctg---aggctactgatcttgtcattgattca 163
            |||||||||||   ||   ||||||||||||   |||||  |||||||||| | ||||||
Sbjct: 1366 gcaaagaatgacgtgataggattacttcctggagaggctgttgatcttgtcgtcgattca 1307

                                                                        
Query: 164  cgggctaccttacaatatgctgatctccaaattactatcgctaagc----tattacgggt 219
            |||||||||| ||||||  ||||||||||||| |||||||||||||    |||||| | |
Sbjct: 1306 cgggctacct-acaatacactgatctccaaataactatcgctaagcaatttattacagat 1248

                                                                        
Query: 220  ctgtttcatttggttgccatttccccttcgcatgataaaaaaccatccatggctaaaaaa 279
            ||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||
Sbjct: 1247 ctgtttcatttggttgccatttccccttcgcatgataaaaaactatccatggccgaaaaa 1188

                                                                        
Query: 280  taaggccatgtttgcatgctttcgccatccttcttgctctcctcgtatttctgaagcaat 339
            ||  ||||||| |||||| ||||  |||||||||||||||||||||||||||||||||||
Sbjct: 1187 tattgccatgtctgcatgttttcttcatccttcttgctctcctcgtatttctgaagcaat 1128

                                                                        
Query: 340  gatgtccacacagatttgcactgtgccggtgtacgagttatcccctgcttcaacaggcta 399
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1127 gatgtccacacagatttgcactgtgctggtgtacgagttatcccctgcttcaacaggcta 1068

                                                                        
Query: 400  ccagatatctcttcccaaagaaccattcttcctttcacggattggaatttctcatccatt 459
            ||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| ||||
Sbjct: 1067 ccagatatctcttcccacagaaccattcttcctttgacggtttggaatttctcattcatt 1008

                                                                        
Query: 460  tccccacgcagctgtattaagctcttaatttcctcgggcttccacttgttctttcttgaa 519
            || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 tctccacgcagctgtatcaagctcttaatttcctcgggcttccacttgttctttcttgaa 948

                                                                        
Query: 520  gatttagctggagcgggagctgaagtgctggaatccttatcagttatgctgatcttgccg 579
            |||||||||| ||| |||||||| |||||||||||||||||  |||||||||||||||||
Sbjct: 947  gatttagctgcagcaggagctgacgtgctggaatccttatctattatgctgatcttgccg 888

                                                                        
Query: 580  agctttggtttgttcccttgagctgaagcattgacaattcttgcaatttttactgctgta 639
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887  agctttggtttgttcccttgagctgaagcattgacaattcttgcaatttttactgctgta 828

                                                                        
Query: 640  ggggatttgaaggactcccaaaaatgatccaatgttttaggctgatgtaaatcagaagat 699
            ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 827  ggggacttgaacgactcccaaaaatgatccaatgttttaggctgatgtaaatcaggagag 768

                         
Query: 700  aagaatgattcac 712
            |||||||||||||
Sbjct: 767  aagaatgattcac 755

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>dbj|AK059666.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-F01, full
           insert sequence
          Length = 1335

 Score =  357 bits (180), Expect = 3e-95
 Identities = 396/468 (84%)
 Strand = Plus / Minus

                                                                       
Query: 225 tcatttggttgccatttccccttcgcatgataaaaaaccatccatggctaaaaaataagg 284
           ||||| ||||||||||||||||| || ||||||||  |  |||||| | || ||||| ||
Sbjct: 995 tcattgggttgccatttccccttggcttgataaaaccctgtccatgtccaagaaatacgg 936

                                                                       
Query: 285 ccatgtttgcatgctttcgccatccttcttgctctcctcgtatttctgaagcaatgatgt 344
           ||| || |  | ||||||  |||| |||||||||||||| |||||||||| |||||||||
Sbjct: 935 ccacgtctttacgctttcctcatctttcttgctctcctcatatttctgaaccaatgatgt 876

                                                                       
Query: 345 ccacacagatttgcactgtgccggtgtacgagttatcccctgcttcaacaggctaccaga 404
           ||| | ||| ||||||||||| ||||||||| ||||||||||  |||||| ||||  |||
Sbjct: 875 ccatagagacttgcactgtgctggtgtacgacttatcccctggctcaacatgctagaaga 816

                                                                       
Query: 405 tatctcttcccaaagaaccattcttcctttcacggattggaatttctcatccatttcccc 464
           |||||||||||| ||||||||||| |||||||| |  || |||| ||||| |||||| ||
Sbjct: 815 tatctcttcccacagaaccattctccctttcacagtctgaaattgctcattcatttcgcc 756

                                                                       
Query: 465 acgcagctgtattaagctcttaatttcctcgggcttccacttgttctttcttgaagattt 524
           ||||| ||| |||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 755 acgcatctgaattaagctcttaatttcctcaggcttccacttgttcttttttgaagattt 696

                                                                       
Query: 525 agctggagcgggagctgaagtgctggaatccttatcagttatgctgatcttgccgagctt 584
           | ||||||| | ||  | |  ||| || |||||| |   ||||||||||||||| | |||
Sbjct: 695 aactggagcagaagaaggatcgctagagtccttacccactatgctgatcttgccaatctt 636

                                                                       
Query: 585 tggtttgttcccttgagctgaagcattgacaattcttgcaatttttactgctgtagggga 644
           || |||  |||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 635 tgatttactcccttgagctgaaccattgacaattcttgcaatttttacagctgtagggga 576

                                                           
Query: 645 tttgaaggactcccaaaaatgatccaatgttttaggctgatgtaaatc 692
           |||||| || ||||||||||| || | ||||||||||| ||| |||||
Sbjct: 575 tttgaatgagtcccaaaaatgctctagtgttttaggcttatgcaaatc 528

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  319 bits (161), Expect = 7e-84
 Identities = 320/373 (85%)
 Strand = Plus / Minus

                                                                            
Query: 320      cctcgtatttctgaagcaatgatgtccacacagatttgcactgtgccggtgtacgagtta 379
                |||| |||||||||| |||||||||||| | ||| ||||||||||| ||||||||| |||
Sbjct: 20032474 cctcatatttctgaaccaatgatgtccatagagacttgcactgtgctggtgtacgactta 20032415

                                                                            
Query: 380      tcccctgcttcaacaggctaccagatatctcttcccaaagaaccattcttcctttcacgg 439
                |||||||  |||||| ||||  ||||||||||||||| ||||||||||| |||||||| |
Sbjct: 20032414 tcccctggctcaacatgctagaagatatctcttcccacagaaccattctccctttcacag 20032355

                                                                            
Query: 440      attggaatttctcatccatttccccacgcagctgtattaagctcttaatttcctcgggct 499
                  || |||| ||||| |||||| ||||||| ||| |||||||||||||||||||| ||||
Sbjct: 20032354 tctgaaattgctcattcatttcgccacgcatctgaattaagctcttaatttcctcaggct 20032295

                                                                            
Query: 500      tccacttgttctttcttgaagatttagctggagcgggagctgaagtgctggaatccttat 559
                |||||||||||||| ||||||||||| ||||||| | ||  | |  ||| || |||||| 
Sbjct: 20032294 tccacttgttcttttttgaagatttaactggagcagaagaaggatcgctagagtccttac 20032235

                                                                            
Query: 560      cagttatgctgatcttgccgagctttggtttgttcccttgagctgaagcattgacaattc 619
                |   ||||||||||||||| | ||||| |||  |||||||||||||| ||||||||||||
Sbjct: 20032234 ccactatgctgatcttgccaatctttgatttactcccttgagctgaaccattgacaattc 20032175

                                                                            
Query: 620      ttgcaatttttactgctgtaggggatttgaaggactcccaaaaatgatccaatgttttag 679
                ||||||||||||| ||||||||||||||||| || ||||||||||| || | ||||||||
Sbjct: 20032174 ttgcaatttttacagctgtaggggatttgaatgagtcccaaaaatgctctagtgttttag 20032115

                             
Query: 680      gctgatgtaaatc 692
                ||| ||| |||||
Sbjct: 20032114 gcttatgcaaatc 20032102



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 225      tcatttggttgccatttccccttcgcatgataaaa 259
                ||||| ||||||||||||||||| || ||||||||
Sbjct: 20032905 tcattgggttgccatttccccttggcttgataaaa 20032871

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>dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0014M17
          Length = 156778

 Score =  319 bits (161), Expect = 7e-84
 Identities = 320/373 (85%)
 Strand = Plus / Minus

                                                                          
Query: 320    cctcgtatttctgaagcaatgatgtccacacagatttgcactgtgccggtgtacgagtta 379
              |||| |||||||||| |||||||||||| | ||| ||||||||||| ||||||||| |||
Sbjct: 136595 cctcatatttctgaaccaatgatgtccatagagacttgcactgtgctggtgtacgactta 136536

                                                                          
Query: 380    tcccctgcttcaacaggctaccagatatctcttcccaaagaaccattcttcctttcacgg 439
              |||||||  |||||| ||||  ||||||||||||||| ||||||||||| |||||||| |
Sbjct: 136535 tcccctggctcaacatgctagaagatatctcttcccacagaaccattctccctttcacag 136476

                                                                          
Query: 440    attggaatttctcatccatttccccacgcagctgtattaagctcttaatttcctcgggct 499
                || |||| ||||| |||||| ||||||| ||| |||||||||||||||||||| ||||
Sbjct: 136475 tctgaaattgctcattcatttcgccacgcatctgaattaagctcttaatttcctcaggct 136416

                                                                          
Query: 500    tccacttgttctttcttgaagatttagctggagcgggagctgaagtgctggaatccttat 559
              |||||||||||||| ||||||||||| ||||||| | ||  | |  ||| || |||||| 
Sbjct: 136415 tccacttgttcttttttgaagatttaactggagcagaagaaggatcgctagagtccttac 136356

                                                                          
Query: 560    cagttatgctgatcttgccgagctttggtttgttcccttgagctgaagcattgacaattc 619
              |   ||||||||||||||| | ||||| |||  |||||||||||||| ||||||||||||
Sbjct: 136355 ccactatgctgatcttgccaatctttgatttactcccttgagctgaaccattgacaattc 136296

                                                                          
Query: 620    ttgcaatttttactgctgtaggggatttgaaggactcccaaaaatgatccaatgttttag 679
              ||||||||||||| ||||||||||||||||| || ||||||||||| || | ||||||||
Sbjct: 136295 ttgcaatttttacagctgtaggggatttgaatgagtcccaaaaatgctctagtgttttag 136236

                           
Query: 680    gctgatgtaaatc 692
              ||| ||| |||||
Sbjct: 136235 gcttatgcaaatc 136223



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 225    tcatttggttgccatttccccttcgcatgataaaa 259
              ||||| ||||||||||||||||| || ||||||||
Sbjct: 137026 tcattgggttgccatttccccttggcttgataaaa 136992

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>gb|AY110231.1| Zea mays CL852_1 mRNA sequence
          Length = 1931

 Score =  170 bits (86), Expect = 4e-39
 Identities = 197/236 (83%)
 Strand = Plus / Minus

                                                                        
Query: 307  tccttcttgctctcctcgtatttctgaagcaatgatgtccacacagatttgcactgtgcc 366
            ||||||||||| ||||||||||||||||  || |||||||| |  |||||||||||||||
Sbjct: 1648 tccttcttgctttcctcgtatttctgaactaacgatgtccaaagcgatttgcactgtgcc 1589

                                                                        
Query: 367  ggtgtacgagttatcccctgcttcaacaggctaccagatatctcttcccaaagaaccatt 426
            || |||||| |||| || |||||||||| | |  | || ||||| ||||| || ||||||
Sbjct: 1588 ggagtacgacttattccttgcttcaacatgttgtcggaaatctcctcccacaggaccatt 1529

                                                                        
Query: 427  cttcctttcacggattggaatttctcatccatttccccacgcagctgtattaagctctta 486
            ||||||||||||   || ||| |||||| ||| || ||||||| ||||||||||||||| 
Sbjct: 1528 cttcctttcacgctctgaaatctctcattcatctcgccacgcatctgtattaagctcttg 1469

                                                                    
Query: 487  atttcctcgggcttccacttgttctttcttgaagatttagctggagcgggagctga 542
            |||||||| || ||||||||||||      ||||||||||||||||| ||||||||
Sbjct: 1468 atttcctcaggtttccacttgttcnnnnnngaagatttagctggagccggagctga 1413



 Score =  111 bits (56), Expect = 3e-21
 Identities = 92/104 (88%)
 Strand = Plus / Minus

                                                                        
Query: 609  attgacaattcttgcaatttttactgctgtaggggatttgaaggactcccaaaaatgatc 668
            ||||||||| | ||||||||| || |||||||| |||||||| |||||||| || || ||
Sbjct: 1352 attgacaatccgtgcaattttaacagctgtaggagatttgaatgactcccagaagtgctc 1293

                                                        
Query: 669  caatgttttaggctgatgtaaatcagaagataagaatgattcac 712
            |||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct: 1292 caatgttttaggctgatgtaaatctgaagagaagaatgcttcac 1249



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 228  tttggttgccatttcccctt 247
            ||||||||||||||||||||
Sbjct: 1727 tttggttgccatttcccctt 1708

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>gb|BT018195.1| Zea mays clone EL01N0559C12.c mRNA sequence
          Length = 1458

 Score =  165 bits (83), Expect = 2e-37
 Identities = 194/231 (83%)
 Strand = Plus / Minus

                                                                       
Query: 312 cttgctctcctcgtatttctgaagcaatgatgtccacacagatttgcactgtgccggtgt 371
           |||||| ||||| ||||||||||  |  |||||||| | |||||||||||||||||| ||
Sbjct: 998 cttgctttcctcatatttctgaactagcgatgtccatagagatttgcactgtgccggagt 939

                                                                       
Query: 372 acgagttatcccctgcttcaacaggctaccagatatctcttcccaaagaaccattcttcc 431
           |||| |||  || || ||||||| | || |||| ||||| | ||| || |||||||||||
Sbjct: 938 acgacttactccttggttcaacatggtatcagaaatctccttccacagtaccattcttcc 879

                                                                       
Query: 432 tttcacggattggaatttctcatccatttccccacgcagctgtattaagctcttaatttc 491
           |||||||   || |||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct: 878 tttcacgctctgaaatttctcattcatttcgccacgcatctgtattaagctcttaatttc 819

                                                              
Query: 492 ctcgggcttccacttgttctttcttgaagatttagctggagcgggagctga 542
           ||| || ||||||||||||  | |||| |||||| ||||||| ||||||||
Sbjct: 818 ctcaggtttccacttgttccgttttgaggatttaactggagcaggagctga 768



 Score =  109 bits (55), Expect = 1e-20
 Identities = 82/91 (90%)
 Strand = Plus / Minus

                                                                       
Query: 608 cattgacaattcttgcaatttttactgctgtaggggatttgaaggactcccaaaaatgat 667
           ||||||| || | ||||||||| || ||||||||||||||||| ||||||||||| || |
Sbjct: 708 cattgacgatccgtgcaattttgacagctgtaggggatttgaatgactcccaaaagtgct 649

                                          
Query: 668 ccaatgttttaggctgatgtaaatcagaaga 698
           ||||||||||||||||||||||||| |||||
Sbjct: 648 ccaatgttttaggctgatgtaaatctgaaga 618

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>ref|NM_125737.3| Arabidopsis thaliana EMB2746; catalytic AT5G63420 (EMB2746) mRNA,
            complete cds
          Length = 3026

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 312  cttgctctcctcgtatttctgaagcaatgatgtccacacagatttgcactgtgccgg 368
            |||||||||||||||||||||||  | ||||| ||| | ||||||||| ||| ||||
Sbjct: 2781 cttgctctcctcgtatttctgaataagtgatgcccagagagatttgcattgtcccgg 2725

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>dbj|AK221272.1| Arabidopsis thaliana mRNA for putative protein, complete cds, clone:
            RAFL24-15-P14
          Length = 3036

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 312  cttgctctcctcgtatttctgaagcaatgatgtccacacagatttgcactgtgccgg 368
            |||||||||||||||||||||||  | ||||| ||| | ||||||||| ||| ||||
Sbjct: 2781 cttgctctcctcgtatttctgaataagtgatgcccagagagatttgcattgtcccgg 2725

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>gb|BT004210.1| Arabidopsis thaliana clone RAFL16-01-C03 (R50172) unknown protein
            (At5g63420) mRNA, complete cds
          Length = 3042

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 312  cttgctctcctcgtatttctgaagcaatgatgtccacacagatttgcactgtgccgg 368
            |||||||||||||||||||||||  | ||||| ||| | ||||||||| ||| ||||
Sbjct: 2781 cttgctctcctcgtatttctgaataagtgatgcccagagagatttgcattgtcccgg 2725

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>dbj|AK176547.1| Arabidopsis thaliana mRNA for putative protein, complete cds, clone:
            RAFL25-06-L06
          Length = 2942

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 312  cttgctctcctcgtatttctgaagcaatgatgtccacacagatttgcactgtgccgg 368
            |||||||||||||||||||||||  | ||||| ||| | ||||||||| ||| ||||
Sbjct: 2742 cttgctctcctcgtatttctgaataagtgatgcccagagagatttgcattgtcccgg 2686

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>gb|AC126782.23| Medicago truncatula clone mth2-14p11, complete sequence
          Length = 135659

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 402   agatatctcttcccaaagaaccattcttcctttcac 437
             ||||||||||||||| ||| |||| |||||||||||
Sbjct: 58004 agatatctcttcccagagagccatccttcctttcac 57969

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>ref|XM_420305.1| PREDICTED: Gallus gallus similar to transcriptional regulator ATRX
            isoform 2; DNA dependent ATPase and helicase; Zinc finger
            helicase; X-linked nuclear protein; helicase 2, X-linked;
            RAD54 (Saccharomyces cerevisiae); alpha
            thalassemia/mental retardation syndrome X-linked (...
            (LOC422331), mRNA
          Length = 7352

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 504  cttgttctttcttgaagattt 524
            |||||||||||||||||||||
Sbjct: 3105 cttgttctttcttgaagattt 3085

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>gb|AC146144.2| Pan troglodytes BAC clone RP43-37J17 from 7, complete sequence
          Length = 206029

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 223   tttcatttggttgccatttcc 243
             |||||||||||||||||||||
Sbjct: 44174 tttcatttggttgccatttcc 44154

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>emb|BX537139.17| Zebrafish DNA sequence from clone DKEY-46K9 in linkage group 9, complete
              sequence
          Length = 243063

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 245    cttcgcatgataaaaaaccatccat 269
              ||||||||||||||||| |||||||
Sbjct: 206585 cttcgcatgataaaaaaacatccat 206561

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>gb|AC108142.3| Homo sapiens BAC clone RP11-402C9 from 4, complete sequence
          Length = 62624

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 657  ccaaaaatgatccaatgttttaggc 681
            ||||||||||||||| |||||||||
Sbjct: 1855 ccaaaaatgatccaaagttttaggc 1879

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>gb|AC098864.3| Homo sapiens BAC clone RP11-359L10 from 4, complete sequence
          Length = 216280

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 657    ccaaaaatgatccaatgttttaggc 681
              ||||||||||||||| |||||||||
Sbjct: 216135 ccaaaaatgatccaaagttttaggc 216159

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>dbj|AB025628.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNJ7
          Length = 80117

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 468   cagctgtattaagctcttaat 488
             |||||||||||||||||||||
Sbjct: 68576 cagctgtattaagctcttaat 68556

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>dbj|AP006202.1| Homo sapiens genomic DNA, chromosome 7, clone:CTB-142L17, complete
             sequence
          Length = 78092

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 626   tttttactgctgtaggggatt 646
             |||||||||||||||||||||
Sbjct: 11337 tttttactgctgtaggggatt 11357

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>gb|AC166114.5| Mus musculus BAC clone RP23-63J20 from chromosome 16, complete sequence
          Length = 207146

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 499    ttccacttgttctttcttga 518
              ||||||||||||||||||||
Sbjct: 144983 ttccacttgttctttcttga 145002

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>gb|AC005740.1| Homo sapiens chromosome 5p, BAC clone 50g21 (LBNL H154), complete
              sequence
          Length = 186780

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 223    tttcatttggttgccatttcccct 246
              |||||||||||| |||||||||||
Sbjct: 163636 tttcatttggtttccatttcccct 163659

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>gb|AC124993.19| Mus musculus chromosome 15, clone RP23-150J21, complete sequence
          Length = 214304

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     cttaactaccccaggcatct 97
              ||||||||||||||||||||
Sbjct: 185093 cttaactaccccaggcatct 185074

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>gb|AF165424.6| Homo sapiens chromosome 8 clone CTB-402F2 map q21.3, complete sequence
          Length = 111736

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 237   catttccccttcgcatgataaaaa 260
             ||||||||||| ||||||||||||
Sbjct: 69141 catttccccttggcatgataaaaa 69118

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>gb|AC127560.4| Mus musculus BAC clone RP24-267I18 from chromosome 5, complete sequence
          Length = 186768

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 469   agctgtattaagctcttaat 488
             ||||||||||||||||||||
Sbjct: 96050 agctgtattaagctcttaat 96069

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>gb|AF091137.1| Trichosurus vulpecula polymeric-immunoglobulin receptor precursor
           (PIGR) mRNA, complete cds
          Length = 2848

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 gctttcgccatccttcttgc 316
           ||||||||||||||||||||
Sbjct: 661 gctttcgccatccttcttgc 642

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>ref|XM_665916.1| Plasmodium berghei strain ANKA hypothetical protein (PB401420.00.0)
           partial mRNA
          Length = 597

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 104 atggcaaagaatgatacgaa 123
           ||||||||||||||||||||
Sbjct: 1   atggcaaagaatgatacgaa 20

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>gb|AC136712.9| Mus musculus chromosome 3, clone RP23-36H15, complete sequence
          Length = 201139

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    taaaaaataaggccatgttt 292
              ||||||||||||||||||||
Sbjct: 151329 taaaaaataaggccatgttt 151310

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>emb|CR407581.9| Zebrafish DNA sequence from clone DKEY-17A16 in linkage group 8, complete
              sequence
          Length = 154966

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 333    aagcaatgatgtccacacagattt 356
              ||||||| ||||||||||||||||
Sbjct: 125713 aagcaattatgtccacacagattt 125736

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>emb|Z97055.1|HS388M5 Human DNA sequence from clone RP3-388M5 on chromosome 22, complete
             sequence
          Length = 177568

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 474   tattaagctcttaatttcct 493
             ||||||||||||||||||||
Sbjct: 71860 tattaagctcttaatttcct 71879

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>emb|AL356486.12| Human DNA sequence from clone RP11-721F14 on chromosome 13 Contains the
             GPR80 gene for G protein-coupled receptor 80, complete
             sequence
          Length = 67645

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   gccatccttcttgctctcct 322
             ||||||||||||||||||||
Sbjct: 18411 gccatccttcttgctctcct 18392

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>gb|AC069233.16| Homo sapiens 3 BAC RP11-95H16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 154204

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 470   gctgtattaagctcttaatt 489
             ||||||||||||||||||||
Sbjct: 95042 gctgtattaagctcttaatt 95023

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>gb|AC157360.9| Mus musculus chromosome 8, clone RP23-420E22, complete sequence
          Length = 195633

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    aaggccatgtttgcatgctt 300
              ||||||||||||||||||||
Sbjct: 191133 aaggccatgtttgcatgctt 191114

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>gb|DQ397580.1| Cenarchaeum symbiosum clone C18D02, complete sequence
          Length = 38412

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 533   cgggagctgaagtgctggaatcct 556
             |||||||||||||||||| |||||
Sbjct: 16618 cgggagctgaagtgctggtatcct 16595

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>gb|DQ397569.1| Cenarchaeum symbiosum clone C07D08, complete sequence
          Length = 43141

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 533   cgggagctgaagtgctggaatcct 556
             |||||||||||||||||| |||||
Sbjct: 35553 cgggagctgaagtgctggtatcct 35576

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>gb|AC103760.2| Homo sapiens chromosome 8, clone CTD-2284J15, complete sequence
          Length = 112655

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 237   catttccccttcgcatgataaaaa 260
             ||||||||||| ||||||||||||
Sbjct: 54013 catttccccttggcatgataaaaa 54036

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>gb|AC098933.2| Homo sapiens chromosome 1 clone RP11-417N7, complete sequence
          Length = 179414

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   ttggttgccatttccccttc 248
             ||||||||||||||||||||
Sbjct: 10473 ttggttgccatttccccttc 10492

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>gb|AC011366.6| Homo sapiens chromosome 5 clone CTC-568L21, complete sequence
          Length = 177954

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   aataaggccatgtttgcatg 297
             ||||||||||||||||||||
Sbjct: 27711 aataaggccatgtttgcatg 27692

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>dbj|AK156138.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830008P21 product:hypothetical protein,
           full insert sequence
          Length = 2644

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 335 gcaatgatgtccacacagat 354
           ||||||||||||||||||||
Sbjct: 175 gcaatgatgtccacacagat 194

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>gb|AC018711.4| Homo sapiens BAC clone RP11-324K4 from 1, complete sequence
          Length = 167334

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   ttggttgccatttccccttc 248
             ||||||||||||||||||||
Sbjct: 47475 ttggttgccatttccccttc 47456

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>gb|AC092272.2| Homo sapiens chromosome 5 clone CTC-339E17, complete sequence
          Length = 145668

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 278    aataaggccatgtttgcatg 297
              ||||||||||||||||||||
Sbjct: 134993 aataaggccatgtttgcatg 134974

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>gb|AY014830.1| Mus musculus lysyl hydroxylase 3 (Plod3) gene, complete cds
          Length = 15549

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  ttggttgccatttccccttc 248
            ||||||||||||||||||||
Sbjct: 2373 ttggttgccatttccccttc 2354

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>gb|AC093422.3| Homo sapiens chromosome 1 clone RP11-383G10, complete sequence
          Length = 180872

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    ttggttgccatttccccttc 248
              ||||||||||||||||||||
Sbjct: 140486 ttggttgccatttccccttc 140505

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>dbj|AK049528.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:C430019L13
            product:unclassifiable, full insert sequence
          Length = 2385

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 335  gcaatgatgtccacacagat 354
            ||||||||||||||||||||
Sbjct: 1849 gcaatgatgtccacacagat 1868

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>emb|BX465866.13| Mouse DNA sequence from clone RP23-128L16 on chromosome X, complete
            sequence
          Length = 62496

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 171  ccttacaatatgctgatctc 190
            ||||||||||||||||||||
Sbjct: 1147 ccttacaatatgctgatctc 1166

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>gb|AC026756.15|AC026756 Homo sapiens chromosome 13 clone RP11-286P8, complete sequence
          Length = 156555

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 303    gccatccttcttgctctcct 322
              ||||||||||||||||||||
Sbjct: 126868 gccatccttcttgctctcct 126887

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>gb|AC007883.3| Homo sapiens BAC clone RP11-508L23 from 2, complete sequence
          Length = 113189

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 505   ttgttctttcttgaagattt 524
             ||||||||||||||||||||
Sbjct: 53802 ttgttctttcttgaagattt 53783

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>gb|AC010974.9| Homo sapiens BAC clone RP11-159N20 from 2, complete sequence
          Length = 147131

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   agatatctcttcccaaagaa 421
             ||||||||||||||||||||
Sbjct: 60175 agatatctcttcccaaagaa 60194

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>gb|AC008844.5|AC008844 Homo sapiens chromosome 5 clone CTD-2157L4, complete sequence
          Length = 113759

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   aataaggccatgtttgcatg 297
             ||||||||||||||||||||
Sbjct: 36611 aataaggccatgtttgcatg 36592

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>emb|BX548065.6| Mouse DNA sequence from clone RP23-163B21 on chromosome X, complete
              sequence
          Length = 225082

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    ccttacaatatgctgatctc 190
              ||||||||||||||||||||
Sbjct: 224229 ccttacaatatgctgatctc 224248

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>gb|AC154199.2| Mus musculus BAC clone RP24-396N5 from 13, complete sequence
          Length = 120685

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 579   gagctttggtttgttccctt 598
             ||||||||||||||||||||
Sbjct: 26415 gagctttggtttgttccctt 26396

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>gb|AC154529.2| Mus musculus BAC clone RP23-463N16 from 16, complete sequence
          Length = 177958

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 499    ttccacttgttctttcttga 518
              ||||||||||||||||||||
Sbjct: 175578 ttccacttgttctttcttga 175559

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>emb|CT571254.7| Mouse DNA sequence from clone RP23-335F6 on chromosome 12, complete
             sequence
          Length = 189879

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   gcaatgatgtccacacagat 354
             ||||||||||||||||||||
Sbjct: 32994 gcaatgatgtccacacagat 32975

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>emb|CT025645.16| Mouse DNA sequence from clone RP23-233D21 on chromosome 13, complete
             sequence
          Length = 225179

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 579   gagctttggtttgttccctt 598
             ||||||||||||||||||||
Sbjct: 74411 gagctttggtttgttccctt 74430

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>emb|AL929548.8| Zebrafish DNA sequence from clone CH211-159E17, complete sequence
          Length = 168842

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 688    aaatcagaagataagaatga 707
              ||||||||||||||||||||
Sbjct: 142960 aaatcagaagataagaatga 142941

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>gb|AC147987.5| Mus musculus BAC clone RP24-456B4 from 5, complete sequence
          Length = 195371

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    ttggttgccatttccccttc 248
              ||||||||||||||||||||
Sbjct: 174128 ttggttgccatttccccttc 174109

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>gb|AC147986.3| Mus musculus BAC clone RP24-404L1 from 5, complete sequence
          Length = 177652

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    ttggttgccatttccccttc 248
              ||||||||||||||||||||
Sbjct: 158452 ttggttgccatttccccttc 158471

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>emb|AJ879075.1| Uncultured bacterium adh gene, ORF1, ORF2 and ORF3
          Length = 5163

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 109 aaagaatgatacgaagcgat 128
           ||||||||||||||||||||
Sbjct: 541 aaagaatgatacgaagcgat 560

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>gb|AC123661.22| Mus musculus chromosome 5, clone RP23-211E12, complete sequence
          Length = 190017

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 469    agctgtattaagctcttaat 488
              ||||||||||||||||||||
Sbjct: 149895 agctgtattaagctcttaat 149914

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>gb|AC124325.10| Mus musculus chromosome 7, clone RP24-462O14, complete sequence
          Length = 137613

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   caaagaaccattcttccttt 434
             ||||||||||||||||||||
Sbjct: 73343 caaagaaccattcttccttt 73324

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>dbj|AP001578.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB1954F7
          Length = 239057

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    taaaaaataaggccatgttt 292
              ||||||||||||||||||||
Sbjct: 119307 taaaaaataaggccatgttt 119288


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,883,284
Number of Sequences: 3902068
Number of extensions: 6883284
Number of successful extensions: 122651
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122493
Number of HSP's gapped (non-prelim): 153
length of query: 712
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 689
effective length of database: 17,143,297,704
effective search space: 11811732118056
effective search space used: 11811732118056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result