ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2a23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P2RX2_CAVPO (O70397) P2X purinoceptor 2 (ATP receptor) (P2X2) (P... 32 2.2
2Y1178_SYNY3 (P74178) Hypothetical protein sll1178 32 2.8
3GPMI_CLOPE (Q8XKU2) 2,3-bisphosphoglycerate-independent phosphog... 31 4.8
4LRC40_CHICK (Q5ZLN0) Leucine-rich repeat-containing protein 40 31 4.8
5NFI_THEVO (Q97AL5) Bifunctional methyltransferase/endonuclease [... 30 6.3
6KINB_BACSU (Q08430) Sporulation kinase B (EC 2.7.13.3) 30 8.2

>P2RX2_CAVPO (O70397) P2X purinoceptor 2 (ATP receptor) (P2X2) (Purinergic|
           receptor)
          Length = 474

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = -2

Query: 741 NCAGGDTDVIVNGRELHKRDLDLLVGRGLPRISGKSYSIEISGNVTDEANGKKLRSLGKL 562
           +C  G+ D++ NG         L  GR +P   G++ + E+SG    E        LGK+
Sbjct: 137 DCTAGELDMLGNG---------LRTGRCVPYYHGEAKTCEVSGWCPVEDGAAVSHFLGKM 187

Query: 561 APTIEKLKRGFGMHVPE 511
           AP    L +   +H P+
Sbjct: 188 APNFTILIKN-SIHYPK 203



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>Y1178_SYNY3 (P74178) Hypothetical protein sll1178|
          Length = 615

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 115 RLPVMRKYIKTITLISTASRDEKIHQDNNTHKYRLQRN*CCLTDC 249
           +L + R  +  IT +  ++R + +H + N   Y+L R    LTDC
Sbjct: 509 KLNIPRSQLPAITHVDNSARIQTVHPETNPRYYQLLRQFEALTDC 553



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>GPMI_CLOPE (Q8XKU2) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (iPGM)
          Length = 512

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 609 VTDEANGKKLRSLGKLAPTIEKLKRGFGMHVPEEFR*LDIMRGSCIFN 466
           V+ +A GK L+  GKLA     +    G+ VP E      M G+C+ N
Sbjct: 470 VSKDAEGKSLKDGGKLADIAPTMLTVMGLEVPSE------MTGTCLLN 511



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>LRC40_CHICK (Q5ZLN0) Leucine-rich repeat-containing protein 40|
          Length = 603

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = -2

Query: 585 KLRSLGKLAPTIEKLKRGFGMHVPEEFR*LDIMRGSCIFNNQFNHLPRSYLLEGKFVIST 406
           +L +L KL  +  KLK      +PEE   L  ++G  + +N+ +HLP  +   G+ V   
Sbjct: 126 QLENLQKLDVSHNKLKS-----IPEELLQLSHLKGLLLQHNELSHLPDGF---GQLVSLE 177

Query: 405 ELDM 394
           ELD+
Sbjct: 178 ELDL 181



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>NFI_THEVO (Q97AL5) Bifunctional methyltransferase/endonuclease [Includes:|
           Probable methylated-DNA--protein-cysteine
           methyltransferase (EC 2.1.1.-)
           (O-6-methylbase-DNA-alkyltransferase); Endonuclease V
           (EC 3.1.21.7) (Deoxyinosine 3'endonuclease) (Deoxyrib
          Length = 321

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 17/67 (25%), Positives = 35/67 (52%)
 Frame = -2

Query: 741 NCAGGDTDVIVNGRELHKRDLDLLVGRGLPRISGKSYSIEISGNVTDEANGKKLRSLGKL 562
           NC    +D++++G    K     ++G       G   ++E +G + ++  GK++RSL +L
Sbjct: 237 NCTVKGSDLLISGVVAGK-----MIGHHTIVSPGNRINVEEAGRLIEQREGKEMRSLLRL 291

Query: 561 APTIEKL 541
           A  + +L
Sbjct: 292 AHNLTRL 298



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>KINB_BACSU (Q08430) Sporulation kinase B (EC 2.7.13.3)|
          Length = 429

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = -2

Query: 666 GRGLPRISGKSYSIEISGNVTDEANGKKLRSLGKLAPTIEKLK-RGFGMHVPEEFR*LDI 490
           G+G+  IS K     I  N+TD   G     + KL      LK  G G+ +   F  ++ 
Sbjct: 343 GKGMIHISAKRNGHTIMINITDNGVGMTDHQMQKLGEPYYSLKTNGTGLGLTVTFSIIEH 402

Query: 489 MRGSCIFNNQF 457
             G+  FN+ F
Sbjct: 403 HHGTISFNSSF 413


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,315,643
Number of Sequences: 219361
Number of extensions: 1902711
Number of successful extensions: 4363
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4361
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 8127969984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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