ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags31g03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK064216.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-F06, full insert sequence Length = 1399 Score = 236 bits (119), Expect = 5e-59 Identities = 237/275 (86%), Gaps = 6/275 (2%) Strand = Plus / Minus Query: 112 gttatttcacgttcggcttcggtgagtagcgaaacggggacgcgcgcgggccatcagaca 171 ||||||||||||||||||| ||||||||||| |||||||| || || |||||||| |||| Sbjct: 1156 gttatttcacgttcggcttgggtgagtagcggaacggggaagcacgggggccatcggaca 1097 Query: 172 tgctcctcatcggctgctgcccgtttgcgcgggcaaaagagccgtgcaccttgaggctgt 231 |||||||||||| ||||||||||| || ||||| || || |||||||||||| | Sbjct: 1096 ggctcctcatcggttgctgcccgttc---cgagcaaatgaaccctgcaccttgagggcat 1040 Query: 232 ggctgttcctgccgttcatgctgctcgaatgcgccatcctctcggcttgcatcgtctggt 291 |||| ||| || ||||||||||| || |||||||| ||||| |||||||| ||||| | Sbjct: 1039 ggct---cctaccattcatgctgcttgagtgcgccattctctcagcttgcattgtctgat 983 Query: 292 agaagtacgaggagctggccatgtccttgaggttaagcagtggcttcagagcttcaacca 351 |||||||||||||||| ||||||||||||||||| ||||||||||| ||| | || |||| Sbjct: 982 agaagtacgaggagctagccatgtccttgaggttgagcagtggcttgagaacctctacca 923 Query: 352 cttggctcatcagaggccgggctttggggtcccgg 386 ||||||||||||| ||||||||||| ||||||||| Sbjct: 922 cttggctcatcagtggccgggctttcgggtcccgg 888
>ref|XM_450601.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1399 Score = 228 bits (115), Expect = 1e-56 Identities = 236/275 (85%), Gaps = 6/275 (2%) Strand = Plus / Minus Query: 112 gttatttcacgttcggcttcggtgagtagcgaaacggggacgcgcgcgggccatcagaca 171 ||||||||||||||||||| ||||||||||| |||||||| || || |||||||| |||| Sbjct: 1156 gttatttcacgttcggcttgggtgagtagcggaacggggaagcacgggggccatcggaca 1097 Query: 172 tgctcctcatcggctgctgcccgtttgcgcgggcaaaagagccgtgcaccttgaggctgt 231 |||||||||||| ||||||||||| || ||||| || || |||||||| ||| | Sbjct: 1096 ggctcctcatcggttgctgcccgttc---cgagcaaatgaaccctgcaccttaagggcat 1040 Query: 232 ggctgttcctgccgttcatgctgctcgaatgcgccatcctctcggcttgcatcgtctggt 291 |||| ||| || ||||||||||| || |||||||| ||||| |||||||| ||||| | Sbjct: 1039 ggct---cctaccattcatgctgcttgagtgcgccattctctcagcttgcattgtctgat 983 Query: 292 agaagtacgaggagctggccatgtccttgaggttaagcagtggcttcagagcttcaacca 351 |||||||||||||||| ||||||||||||||||| ||||||||||| ||| | || |||| Sbjct: 982 agaagtacgaggagctagccatgtccttgaggttgagcagtggcttgagaacctctacca 923 Query: 352 cttggctcatcagaggccgggctttggggtcccgg 386 ||||||||||||| ||||||||||| ||||||||| Sbjct: 922 cttggctcatcagtggccgggctttcgggtcccgg 888
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 228 bits (115), Expect = 1e-56 Identities = 236/275 (85%), Gaps = 6/275 (2%) Strand = Plus / Minus Query: 112 gttatttcacgttcggcttcggtgagtagcgaaacggggacgcgcgcgggccatcagaca 171 ||||||||||||||||||| ||||||||||| |||||||| || || |||||||| |||| Sbjct: 11739365 gttatttcacgttcggcttgggtgagtagcggaacggggaagcacgggggccatcggaca 11739306 Query: 172 tgctcctcatcggctgctgcccgtttgcgcgggcaaaagagccgtgcaccttgaggctgt 231 |||||||||||| ||||||||||| || ||||| || || |||||||| ||| | Sbjct: 11739305 ggctcctcatcggttgctgcccgttc---cgagcaaatgaaccctgcaccttaagggcat 11739249 Query: 232 ggctgttcctgccgttcatgctgctcgaatgcgccatcctctcggcttgcatcgtctggt 291 |||| ||| || ||||||||||| || |||||||| ||||| |||||||| ||||| | Sbjct: 11739248 ggct---cctaccattcatgctgcttgagtgcgccattctctcagcttgcattgtctgat 11739192 Query: 292 agaagtacgaggagctggccatgtccttgaggttaagcagtggcttcagagcttcaacca 351 |||||||||||||||| ||||||||||||||||| ||||||||||| ||| | || |||| Sbjct: 11739191 agaagtacgaggagctagccatgtccttgaggttgagcagtggcttgagaacctctacca 11739132 Query: 352 cttggctcatcagaggccgggctttggggtcccgg 386 ||||||||||||| ||||||||||| ||||||||| Sbjct: 11739131 cttggctcatcagtggccgggctttcgggtcccgg 11739097
>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0711F01 Length = 193091 Score = 228 bits (115), Expect = 1e-56 Identities = 236/275 (85%), Gaps = 6/275 (2%) Strand = Plus / Minus Query: 112 gttatttcacgttcggcttcggtgagtagcgaaacggggacgcgcgcgggccatcagaca 171 ||||||||||||||||||| ||||||||||| |||||||| || || |||||||| |||| Sbjct: 173999 gttatttcacgttcggcttgggtgagtagcggaacggggaagcacgggggccatcggaca 173940 Query: 172 tgctcctcatcggctgctgcccgtttgcgcgggcaaaagagccgtgcaccttgaggctgt 231 |||||||||||| ||||||||||| || ||||| || || |||||||| ||| | Sbjct: 173939 ggctcctcatcggttgctgcccgttc---cgagcaaatgaaccctgcaccttaagggcat 173883 Query: 232 ggctgttcctgccgttcatgctgctcgaatgcgccatcctctcggcttgcatcgtctggt 291 |||| ||| || ||||||||||| || |||||||| ||||| |||||||| ||||| | Sbjct: 173882 ggct---cctaccattcatgctgcttgagtgcgccattctctcagcttgcattgtctgat 173826 Query: 292 agaagtacgaggagctggccatgtccttgaggttaagcagtggcttcagagcttcaacca 351 |||||||||||||||| ||||||||||||||||| ||||||||||| ||| | || |||| Sbjct: 173825 agaagtacgaggagctagccatgtccttgaggttgagcagtggcttgagaacctctacca 173766 Query: 352 cttggctcatcagaggccgggctttggggtcccgg 386 ||||||||||||| ||||||||||| ||||||||| Sbjct: 173765 cttggctcatcagtggccgggctttcgggtcccgg 173731
>gb|AY109566.1| Zea mays CL13678_1 mRNA sequence Length = 635 Score = 163 bits (82), Expect = 6e-37 Identities = 142/162 (87%) Strand = Plus / Plus Query: 233 gctgttcctgccgttcatgctgctcgaatgcgccatcctctcggcttgcatcgtctggta 292 |||| |||| ||||||||||||||||| |||||||||| |||||| |||||||||||| | Sbjct: 374 gctgctcctcccgttcatgctgctcgagtgcgccatccgctcggcctgcatcgtctggaa 433 Query: 293 gaagtacgaggagctggccatgtccttgaggttaagcagtggcttcagagcttcaaccac 352 |||||| |||| ||| ||||||||||||||||| |||| |||||||| | || ||||| Sbjct: 434 gaagtaggaggcgctcgccatgtccttgaggttctgcagcggcttcaggacctccaccac 493 Query: 353 ttggctcatcagaggccgggctttggggtcccggctcaggca 394 ||||||||||| ||||| || |||||||||||||||||||| Sbjct: 494 ctggctcatcaggggccgcgccttggggtcccggctcaggca 535
>ref|NM_192557.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1485 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 292 agaagtacgaggagctggccatgtccttgaggttaagcagtggcttcagagcttcaacca 351 ||||||| ||||||||||||||||| |||||||| || || ||||| || |||| |||| Sbjct: 1306 agaagtatgaggagctggccatgtctttgaggttcaggaggggcttgaggacttcgacca 1247 Query: 352 cttggctcatcagaggccgggctttggggtcccgg 386 |||| ||||| ||||||| ||| ||||| |||||| Sbjct: 1246 cttgactcatgagaggcctggccttgggatcccgg 1212 Score = 48.1 bits (24), Expect = 0.023 Identities = 45/52 (86%) Strand = Plus / Minus Query: 145 acggggacgcgcgcgggccatcagacatgctcctcatcggctgctgcccgtt 196 ||||||| ||| ||||||||| || | ||||||||| |||||||||||||| Sbjct: 1444 acggggaggcgtgcgggccataggagaggctcctcattggctgctgcccgtt 1393
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 292 agaagtacgaggagctggccatgtccttgaggttaagcagtggcttcagagcttcaacca 351 ||||||| ||||||||||||||||| |||||||| || || ||||| || |||| |||| Sbjct: 22915569 agaagtatgaggagctggccatgtctttgaggttcaggaggggcttgaggacttcgacca 22915628 Query: 352 cttggctcatcagaggccgggctttggggtcccgg 386 |||| ||||| ||||||| ||| ||||| |||||| Sbjct: 22915629 cttgactcatgagaggcctggccttgggatcccgg 22915663 Score = 48.1 bits (24), Expect = 0.023 Identities = 45/52 (86%) Strand = Plus / Plus Query: 145 acggggacgcgcgcgggccatcagacatgctcctcatcggctgctgcccgtt 196 ||||||| ||| ||||||||| || | ||||||||| |||||||||||||| Sbjct: 22915431 acggggaggcgtgcgggccataggagaggctcctcattggctgctgcccgtt 22915482
>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0700A11 Length = 136321 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 292 agaagtacgaggagctggccatgtccttgaggttaagcagtggcttcagagcttcaacca 351 ||||||| ||||||||||||||||| |||||||| || || ||||| || |||| |||| Sbjct: 119126 agaagtatgaggagctggccatgtctttgaggttcaggaggggcttgaggacttcgacca 119185 Query: 352 cttggctcatcagaggccgggctttggggtcccgg 386 |||| ||||| ||||||| ||| ||||| |||||| Sbjct: 119186 cttgactcatgagaggcctggccttgggatcccgg 119220 Score = 48.1 bits (24), Expect = 0.023 Identities = 45/52 (86%) Strand = Plus / Plus Query: 145 acggggacgcgcgcgggccatcagacatgctcctcatcggctgctgcccgtt 196 ||||||| ||| ||||||||| || | ||||||||| |||||||||||||| Sbjct: 118988 acggggaggcgtgcgggccataggagaggctcctcattggctgctgcccgtt 119039
>dbj|AK103037.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117E11, full insert sequence Length = 2501 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 292 agaagtacgaggagctggccatgtccttgaggttaagcagtggcttcagagcttcaacca 351 ||||||| ||||||||||||||||| |||||||| || || ||||| || |||| |||| Sbjct: 1495 agaagtatgaggagctggccatgtctttgaggttcaggaggggcttgaggacttcgacca 1436 Query: 352 cttggctcatcagaggccgggctttggggtcccgg 386 |||| ||||| ||||||| ||| ||||| |||||| Sbjct: 1435 cttgactcatgagaggcctggccttgggatcccgg 1401 Score = 48.1 bits (24), Expect = 0.023 Identities = 45/52 (86%) Strand = Plus / Minus Query: 145 acggggacgcgcgcgggccatcagacatgctcctcatcggctgctgcccgtt 196 ||||||| ||| ||||||||| || | ||||||||| |||||||||||||| Sbjct: 1633 acggggaggcgtgcgggccataggagaggctcctcattggctgctgcccgtt 1582
>gb|AY111890.1| Zea mays CL54662_1 mRNA sequence Length = 603 Score = 73.8 bits (37), Expect = 4e-10 Identities = 97/117 (82%) Strand = Plus / Plus Query: 278 ttgcatcgtctggtagaagtacgaggagctggccatgtccttgaggttaagcagtggctt 337 |||||| | |||| || |||| || ||||||||||||||||||||||| | || ||||| Sbjct: 386 ttgcatggactggaagtagtaggaagagctggccatgtccttgaggttctggagaggctt 445 Query: 338 cagagcttcaaccacttggctcatcagaggccgggctttggggtcccggctcaggca 394 ||| | || ||||| |||||||||||||||| || |||||||| ||||| ||||| Sbjct: 446 cagcacctccaccacctggctcatcagaggcctagccttggggtcacggctgaggca 502 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 gctcctcatcggctgctgcccgtt 196 ||||||||| |||||||||||||| Sbjct: 290 gctcctcatgggctgctgcccgtt 313
>gb|DQ438978.1| Bifidobacterium bifidum alpha-galactosidase (melA) gene, complete cds Length = 4800 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 233 gctgttcctgccgttcatgctg 254 |||||||||||||||||||||| Sbjct: 4119 gctgttcctgccgttcatgctg 4140
>ref|NM_110996.2| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT3G01300 mRNA, complete cds Length = 1942 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Minus Query: 276 gcttgcatcgtctggtagaagtacgaggagctggccatgtccttgaggt 324 |||||||| |||||| || |||| || | ||| |||||||||||||||| Sbjct: 1560 gcttgcattgtctggaagtagtaagaagcgctagccatgtccttgaggt 1512
>gb|AC008261.5|ATAC008261 Arabidopsis thaliana chromosome III BAC T4P13 genomic sequence, complete sequence Length = 93735 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Minus Query: 276 gcttgcatcgtctggtagaagtacgaggagctggccatgtccttgaggt 324 |||||||| |||||| || |||| || | ||| |||||||||||||||| Sbjct: 6185 gcttgcattgtctggaagtagtaagaagcgctagccatgtccttgaggt 6137
>gb|AC010676.6|ATAC010676 Arabidopsis thaliana chromosome III BAC T22N4 genomic sequence, complete sequence Length = 58448 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Minus Query: 276 gcttgcatcgtctggtagaagtacgaggagctggccatgtccttgaggt 324 |||||||| |||||| || |||| || | ||| |||||||||||||||| Sbjct: 47831 gcttgcattgtctggaagtagtaagaagcgctagccatgtccttgaggt 47783
>gb|AY057584.1| Arabidopsis thaliana AT3g01300/T22N4_7 mRNA, complete cds Length = 1841 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Minus Query: 276 gcttgcatcgtctggtagaagtacgaggagctggccatgtccttgaggt 324 |||||||| |||||| || |||| || | ||| |||||||||||||||| Sbjct: 1459 gcttgcattgtctggaagtagtaagaagcgctagccatgtccttgaggt 1411
>gb|AY087034.1| Arabidopsis thaliana clone 30775 mRNA, complete sequence Length = 1923 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Minus Query: 276 gcttgcatcgtctggtagaagtacgaggagctggccatgtccttgaggt 324 |||||||| |||||| || |||| || | ||| |||||||||||||||| Sbjct: 1560 gcttgcattgtctggaagtagtaagaagcgctagccatgtccttgaggt 1512
>emb|BX469913.15| Zebrafish DNA sequence from clone DKEY-237G5 in linkage group 20, complete sequence Length = 196927 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 accccacccccagaatgatcc 60 ||||||||||||||||||||| Sbjct: 109580 accccacccccagaatgatcc 109560
>dbj|AP006116.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT40C04, TM0199, complete sequence Length = 123325 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 309 gccatgtccttgaggttaagcagtggcttcagagctt 345 ||||||||||||||||| ||| |||||| ||||||| Sbjct: 116211 gccatgtccttgaggttttgcaatggctttagagctt 116175
>dbj|AP004901.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT13M13, TM0051b, complete sequence Length = 54022 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 309 gccatgtccttgaggttaagcagtggcttcagagctt 345 ||||||||||||||||| ||| |||||| ||||||| Sbjct: 12007 gccatgtccttgaggttttgcaatggctttagagctt 12043
>emb|AL928802.7| Human DNA sequence from clone RP13-338G2 on chromosome 9 Contains part of the ROR2 gene for receptor tyrosine kinase-like orphan receptor 2 and a CpG island, complete sequence Length = 27017 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 agcagtggcttcagagcttc 346 |||||||||||||||||||| Sbjct: 19795 agcagtggcttcagagcttc 19776
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 ggctgtggctgttcctgccg 245 |||||||||||||||||||| Sbjct: 875223 ggctgtggctgttcctgccg 875242
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 gagcttcaaccacttggctc 359 |||||||||||||||||||| Sbjct: 1378865 gagcttcaaccacttggctc 1378884
>ref|NM_212076.1| Eremothecium gossypii AGR348Wp (AGR348W), mRNA Length = 1629 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 gagcttcaaccacttggctc 359 |||||||||||||||||||| Sbjct: 1134 gagcttcaaccacttggctc 1153
>dbj|AP001107.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-867G23, complete sequences Length = 196662 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 cccacccccagaatgatcct 61 |||||||||||||||||||| Sbjct: 25233 cccacccccagaatgatcct 25214
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 ccaggactacgacgcgacgc 99 |||||||||||||||||||| Sbjct: 16685 ccaggactacgacgcgacgc 16666 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,742,216 Number of Sequences: 3902068 Number of extensions: 2742216 Number of successful extensions: 50377 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50286 Number of HSP's gapped (non-prelim): 91 length of query: 416 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 394 effective length of database: 17,147,199,772 effective search space: 6755996710168 effective search space used: 6755996710168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
