>NIPA2_MOUSE (Q9JJC8) Non-imprinted in Prader-Willi/Angelman syndrome region|
           protein 2 homolog
          Length = 359

 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 33/70 (47%), Positives = 47/70 (67%)
 Frame = -2

Query: 674 LNKALDTFNTAVVSPIYYVMFTSLTIIASVIMFKDWDRQNPTQIVTEMCGFVTILSGTFL 495
           LN+ALD FNT++V+PIYYV FT+  +  S I+FK+W       ++  + GF TI+ G FL
Sbjct: 236 LNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFL 295

Query: 494 LHKTKDMNDS 465
           LH  KD++ S
Sbjct: 296 LHAFKDVSFS 305

>NIPA2_PONPY (Q5R7Q3) Non-imprinted in Prader-Willi/Angelman syndrome region|
           protein 2 homolog
          Length = 360

 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 33/70 (47%), Positives = 47/70 (67%)
 Frame = -2

Query: 674 LNKALDTFNTAVVSPIYYVMFTSLTIIASVIMFKDWDRQNPTQIVTEMCGFVTILSGTFL 495
           LN+ALD FNT++V+PIYYV FT+  +  S I+FK+W       ++  + GF TI+ G FL
Sbjct: 236 LNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFL 295

Query: 494 LHKTKDMNDS 465
           LH  KD++ S
Sbjct: 296 LHAFKDVSFS 305

>NIPA2_HUMAN (Q8N8Q9) Non-imprinted in Prader-Willi/Angelman syndrome region|
           protein 2
          Length = 360

 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 33/70 (47%), Positives = 47/70 (67%)
 Frame = -2

Query: 674 LNKALDTFNTAVVSPIYYVMFTSLTIIASVIMFKDWDRQNPTQIVTEMCGFVTILSGTFL 495
           LN+ALD FNT++V+PIYYV FT+  +  S I+FK+W       ++  + GF TI+ G FL
Sbjct: 236 LNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFL 295

Query: 494 LHKTKDMNDS 465
           LH  KD++ S
Sbjct: 296 LHAFKDVSFS 305

>NIPA1_HUMAN (Q7RTP0) Non-imprinted in Prader-Willi/Angelman syndrome region|
           protein 1
          Length = 329

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 27/72 (37%), Positives = 44/72 (61%)
 Frame = -2

Query: 674 LNKALDTFNTAVVSPIYYVMFTSLTIIASVIMFKDWDRQNPTQIVTEMCGFVTILSGTFL 495
           +NKAL+ F+++V   IYYV+FT+L ++AS I+F++W        +   CGF T+  G  L
Sbjct: 248 INKALECFDSSVFGAIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTTVSVGIVL 307

Query: 494 LHKTKDMNDSTG 459
           +   K+ N + G
Sbjct: 308 IQVFKEFNFNLG 319

>NIPA1_MOUSE (Q8BHK1) Non-imprinted in Prader-Willi/Angelman syndrome region|
           protein 1 homolog
          Length = 323

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 27/72 (37%), Positives = 44/72 (61%)
 Frame = -2

Query: 674 LNKALDTFNTAVVSPIYYVMFTSLTIIASVIMFKDWDRQNPTQIVTEMCGFVTILSGTFL 495
           +NKAL+ F+++V   IYYV+FT+L ++AS I+F++W        +   CGF T+  G  L
Sbjct: 242 INKALECFDSSVFGAIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTTVSVGIVL 301

Query: 494 LHKTKDMNDSTG 459
           +   K+ N + G
Sbjct: 302 IQVFKEFNFNLG 313

>CAC1D_RAT (P27732) Voltage-dependent L-type calcium channel alpha-1D subunit|
            (Voltage-gated calcium channel alpha subunit Cav1.3)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 2)
            (RAT brain class D) (RBD)
          Length = 2203

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 143  STYNFHNLILSNSKDEIKPPSSVPHQLILP 232
            S++NF  L   NS+D++ P  ++PH+  LP
Sbjct: 1963 SSFNFECLRRQNSQDDVLPSPALPHRAALP 1992

>CP26A_XENLA (O93323) Cytochrome P450 26A1 (EC 1.14.-.-) (Retinoic acid|
           degrading enzyme CYP26) (xCYP26) (Retinoic
           acid-converting enzyme) (RACE)
          Length = 492

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = -2

Query: 518 TILSGTFLLHKTKDMNDSTGPTLSTR---RTKHASQTAFAIEVLP-LKYQDCVDDETLPL 351
           T L+    LHK  D+ +     L T+    TK   +   +IEVL  LKY  CV  ETL L
Sbjct: 304 TSLTSFLALHK--DVLEKVRKELETQGLLSTKPEEKKELSIEVLQQLKYTSCVIKETLRL 361

Query: 350 SLPKA 336
           S P A
Sbjct: 362 SPPVA 366

>RPOC2_CHLRE (Q7PCJ6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 3120

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 20/44 (45%), Positives = 27/44 (61%)
 Frame = -2

Query: 503  TFLLHKTKDMNDSTGPTLSTRRTKHASQTAFAIEVLPLKYQDCV 372
            TFLL KT  ++ ++  TLST      +Q AFAIE  P+KY+  V
Sbjct: 3017 TFLL-KTASVDRASRETLSTDPLNPNNQVAFAIE--PIKYEPIV 3057

>YDN1_SCHPO (P87293) Hypothetical protein C16A10.01 in chromosome I|
          Length = 830

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 638 VSPIYYVMFTSLTIIASVIMFKDWDRQNPTQIVTEMCGFV 519
           VSP +Y++   +  ++ +I+ +   RQ P Q+    CG+V
Sbjct: 662 VSPYWYILLIPIFTLSLLIVTQSHPRQWPIQMFVACCGYV 701


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,014,845
Number of Sequences: 219361
Number of extensions: 2098954
Number of successful extensions: 4786
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4786
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)