ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags31f08 |
|---|---|
| Clone Library Name | barley_pub |
>EMF2_ARATH (Q8L6Y4) Polycomb protein EMBRYONIC FLOWER 2| Length = 631 Score = 90.5 bits (223), Expect = 3e-18 Identities = 37/55 (67%), Positives = 42/55 (76%) Frame = -3 Query: 594 HIPWACEAFTHQHGQELVQNPRLRWCWRVLMIKLWNHGLLNGRTMNICNKHLESL 430 HIPWACEAF+ HG +V+ P L WCWRV M+KLWNHGLL+ RTMN CN LE L Sbjct: 575 HIPWACEAFSRLHGPIMVRTPHLIWCWRVFMVKLWNHGLLDARTMNNCNTFLEQL 629
>VRN2_ARATH (Q8W5B1) Polycomb group protein VERNALIZATION 2| Length = 440 Score = 68.2 bits (165), Expect = 2e-11 Identities = 29/59 (49%), Positives = 39/59 (66%) Frame = -3 Query: 594 HIPWACEAFTHQHGQELVQNPRLRWCWRVLMIKLWNHGLLNGRTMNICNKHLESLASQS 418 HI WACE F+ + +EL L WCWR+ +IKLWNHGL++ T+N CN LE+ + S Sbjct: 337 HISWACEVFSRFYEKELHCYSSLFWCWRLFLIKLWNHGLVDSATINNCNTILENCRNTS 395
>FIS2_ARATH (Q9ZNT9) Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2| Length = 632 Score = 58.5 bits (140), Expect = 1e-08 Identities = 23/59 (38%), Positives = 35/59 (59%) Frame = -3 Query: 594 HIPWACEAFTHQHGQELVQNPRLRWCWRVLMIKLWNHGLLNGRTMNICNKHLESLASQS 418 H+PWACE F H +E+ + W WR+ IKLWN+GL+ +T + C L S + ++ Sbjct: 553 HVPWACEEFAKLHKEEMKNSSSFDWWWRMFRIKLWNNGLICAKTFHKCTTILLSNSDEA 611
>Y2536_DEIRA (Q9RRF6) UPF0190 protein DR2536| Length = 361 Score = 35.0 bits (79), Expect = 0.16 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Frame = -2 Query: 595 PYTLGVRGIHPSA-WTGTRAEPETTMVLARTDDQAL--EPRPAKWPHHEYLQQTSRELGK 425 P+ G +GI T TR +P+TT LA D+ PA PH + Q T + +G+ Sbjct: 243 PWKYGFKGIKAIVRMTLTRTQPQTTWALAAPDEYGFYANVNPAV-PHPRWSQATEQRIGE 301 Query: 424 PKRRP 410 RRP Sbjct: 302 SGRRP 306
>RGYR1_AERPE (Q9YCB6) Reverse gyrase 1 [Includes: Helicase (EC 3.6.1.-);| Topoisomerase (EC 5.99.1.3)] Length = 1376 Score = 31.6 bits (70), Expect = 1.8 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 4/88 (4%) Frame = +2 Query: 236 GPTQNNPQCKRPSCPRMQPRRGRQKSKCYHAALPKKGIAGWTSPAQLAQCFLPSHDRLGS 415 GP + CPR PR LP+KG++GWT A+L L LG+ Sbjct: 27 GPNSEERLSRGLPCPRCLPR------------LPRKGVSGWTGLARL----LRREGTLGA 70 Query: 416 AL----WLAKLSRCLLQIFMVRPFSRPW 487 + L + +R L + F S PW Sbjct: 71 GVKAMASLEEEARSLWRFFEKAVGSPPW 98
>PHLA1_MOUSE (Q62392) Pleckstrin homology-like domain family A member 1 (T-cell| death-associated gene 51 protein) (Proline- and glutamine-rich protein) (PQR protein) Length = 261 Score = 30.8 bits (68), Expect = 3.1 Identities = 12/32 (37%), Positives = 15/32 (46%) Frame = +2 Query: 29 HRYPQPFVSPYTHPSYNRYPQSFVFVFPCIHP 124 H YP P PY+HP + +P P HP Sbjct: 203 HSYPHPHPHPYSHPHQHPHPHPHPHPHPHPHP 234
>HOG1_HORVU (P17990) Gamma-hordein-1 precursor| Length = 305 Score = 30.4 bits (67), Expect = 4.0 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +2 Query: 23 PGHRYPQPFVSPYTHPSYNRYPQSFVFVFPCIHPRIHV 136 P YPQP + P+ P +YP+ FP P I + Sbjct: 120 PPQSYPQPPLQPFPQPPQQKYPEQPQQPFPWQQPTIQL 157
>GLGA_CHLPN (Q9Z6V8) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 476 Score = 30.0 bits (66), Expect = 5.3 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%) Frame = -1 Query: 380 GLAEQGWSSRQCPFLAVQHDNTLIS--GVLVEAASEDKTVSY-----IGDYFGL 240 G+ E W+ + P LAVQ+D +L+S VL E++ V Y DYF L Sbjct: 243 GIDEDVWNPKTDPALAVQYDASLLSEPDVLFTKKEENRAVLYEKLGISSDYFPL 296
>ANC5_MOUSE (Q8BTZ4) Anaphase-promoting complex subunit 5 (APC5) (Cyclosome| subunit 5) Length = 740 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Frame = -2 Query: 184 VCFMHCLKHLLTLGPGHVDSWVYAWKHKHKR---LGISVVAGMGVR 56 VC HCL L LG DS+V +H K+ G+ +A +G++ Sbjct: 323 VCLQHCLSWLYVLGQKRADSYVLL-EHSVKKAVHFGLPYLASLGIQ 367
>RFT1_YEAST (P38206) Oligosaccharide translocation protein RFT1 (Requiring| fifty-three protein 1) Length = 574 Score = 29.6 bits (65), Expect = 6.9 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -2 Query: 244 GWAESANVVFCLDYYFHFLLVCFMHCLKHLLTLG 143 G+ +S + F D HF V F C KHLLT G Sbjct: 272 GYPKSTSYFFQNDILQHFKKVYFQLCFKHLLTEG 305
>HYPF2_RALEU (O07451) Carbamoyltransferase hypF2 (EC 2.1.3.-) (Carbamoyl| phosphate-converting enzyme hypF2) ([NiFe]-hydrogenase maturation factor hypF2) (Hydrogenase maturation protein hypF2) Length = 806 Score = 29.3 bits (64), Expect = 9.0 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -1 Query: 344 PFLAVQHDNTLISGVLVEAASEDKTVSYIGDYFGLGRIGK 225 P +AVQH + I+ VL E S++ + D GLG G+ Sbjct: 509 PAVAVQHHHAHIAAVLAEHGSDEPAIGLALDGVGLGDDGQ 548
>ANC5_HUMAN (Q9UJX4) Anaphase-promoting complex subunit 5 (APC5) (Cyclosome| subunit 5) Length = 755 Score = 29.3 bits (64), Expect = 9.0 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Frame = -2 Query: 184 VCFMHCLKHLLTLGPGHVDSWVYAWKHKHKR---LGISVVAGMGVR 56 VC HCL L LG DS+V +H K+ G+ +A +G++ Sbjct: 338 VCLQHCLSWLYVLGQKRSDSYVLL-EHSVKKAVHFGLPYLASLGIQ 382 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,608,351 Number of Sequences: 219361 Number of extensions: 2140805 Number of successful extensions: 6473 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 6187 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6463 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
