ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags31f06 |
|---|---|
| Clone Library Name | barley_pub |
>FBLN5_MOUSE (Q9WVH9) Fibulin-5 precursor (FIBL-5) (Developmental arteries and| neural crest EGF-like protein) (Dance) Length = 448 Score = 32.7 bits (73), Expect = 0.80 Identities = 31/125 (24%), Positives = 52/125 (41%) Frame = +1 Query: 214 YDFEQCSSIHNTDILHR*DRSTT*PVIPKFVCIHSWTSHFCCCPILWPGSTSP*MLHISV 393 Y+ E+ IH +D+ D + + + C++ S+FC CP PG ++ + Sbjct: 236 YELEE-DGIHCSDM----DECSFSEFLCQHECVNQPGSYFCSCP---PG-------YVLL 280 Query: 394 SDIRSCSHMFITHSLLITARQDLAVVLPN*CLKTVELVVNLERETQCSSLDGAYPCLASV 573 D RSC QD+ N C +L+ C +L G + C+ + Sbjct: 281 DDNRSC--------------QDI-----NECEHRNHTCTSLQT---CYNLQGGFKCIDPI 318 Query: 574 ACEEP 588 +CEEP Sbjct: 319 SCEEP 323
>KRA43_HUMAN (Q9BYR4) Keratin-associated protein 4-3 (Keratin-associated protein| 4.3) (Ultrahigh sulfur keratin-associated protein 4.3) (Fragment) Length = 98 Score = 32.0 bits (71), Expect = 1.4 Identities = 21/74 (28%), Positives = 27/74 (36%) Frame = +2 Query: 218 ISSSAHPSIILISCTGRIGLRHDL*SPNLCVSTHGRPISAVAQFCGPGPQVLRCFTFLCL 397 ISS PS + SC + P+ C+S+ RP C P + C C Sbjct: 9 ISSCCRPSCCISSCCKPSCCQTTCCRPSCCISSCYRPQCCQPSCCRPACCISSCCHPSCC 68 Query: 398 TSDLAVTCSLPTPC 439 S S PT C Sbjct: 69 VSSCRCPFSCPTTC 82
>PGMP_ARATH (Q9SCY0) Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)| (Glucose phosphomutase) (PGM) Length = 623 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +3 Query: 81 RMLLCGQKSLGRLSDH-RHATNIYPTTAFLQMLNSRTKQNGPVDMI 215 ++ +CG++S G SDH R I+ A+L +L R K P D + Sbjct: 427 KLSICGEESFGTGSDHIREKDGIWAVLAWLSILAHRNKDTKPGDKL 472
>FBLN5_RAT (Q9WVH8) Fibulin-5 precursor (FIBL-5) (Developmental arteries and| neural crest EGF-like protein) (Dance) (Embryonic vascular EGF repeat-containing protein) (EVEC) Length = 448 Score = 31.2 bits (69), Expect = 2.3 Identities = 31/125 (24%), Positives = 50/125 (40%) Frame = +1 Query: 214 YDFEQCSSIHNTDILHR*DRSTT*PVIPKFVCIHSWTSHFCCCPILWPGSTSP*MLHISV 393 Y+ E+ IH +D+ D + + + C++ S+FC CP PG ++ + Sbjct: 236 YELEE-DGIHCSDM----DECSFSEFLCQHECVNQPGSYFCSCP---PG-------YVLL 280 Query: 394 SDIRSCSHMFITHSLLITARQDLAVVLPN*CLKTVELVVNLERETQCSSLDGAYPCLASV 573 D RSC QD+ N C L+ C +L G + C+ + Sbjct: 281 EDNRSC--------------QDI-----NECEHRNHTCTPLQT---CYNLQGGFKCIDPI 318 Query: 574 ACEEP 588 CEEP Sbjct: 319 VCEEP 323
>ADAM1_RAT (P70505) ADAM 1 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 1) (Fertilin alpha subunit) Length = 789 Score = 30.0 bits (66), Expect = 5.2 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 10/77 (12%) Frame = +3 Query: 366 KSLDASHFCV*HPILQSHVHYPLPAYNCKARSGC-------CASKLMPEDCRAGGEPG-- 518 K + C H LQ H P C C C + P DC +GG G Sbjct: 652 KKVCMESICTGHATLQYDCH---PQEMCHGNGVCNNFKHCHCDAGFSPPDCSSGGNGGSV 708 Query: 519 EGNPMFK-SGRSISLFG 566 + P+ K + R++SLFG Sbjct: 709 DSGPVGKPADRNLSLFG 725
>PGMC_PEA (Q9SM60) Phosphoglucomutase, cytoplasmic (EC 5.4.2.2) (Glucose| phosphomutase) (PGM) Length = 582 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +3 Query: 90 LCGQKSLGRLSDH-RHATNIYPTTAFLQMLNSRTKQN 197 +CG++S G SDH R I+ A+L +L +TK N Sbjct: 384 VCGEESFGTGSDHIREKDGIWAVLAWLSILAYKTKDN 420
>PGMP_BRANA (Q9SMM0) Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)| (Glucose phosphomutase) (PGM) Length = 629 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = +3 Query: 81 RMLLCGQKSLGRLSDH-RHATNIYPTTAFLQMLNSRTKQNGP 203 ++ +CG++S G SDH R I+ A+L +L R K P Sbjct: 433 KLSICGEESFGTGSDHIREKDGIWAVLAWLSILAHRIKDKKP 474
>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1| Length = 2173 Score = 29.6 bits (65), Expect = 6.7 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -2 Query: 161 CCGGVYVGSMPMI*KPAQALLT 96 CCGG Y+ SMP KP + ++T Sbjct: 2104 CCGGTYLPSMPRSYKPQRVVIT 2125
>OXSM_HUMAN (Q9NWU1) 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial| precursor (EC 2.3.1.41) (Beta-ketoacyl synthase) Length = 459 Score = 29.6 bits (65), Expect = 6.7 Identities = 20/57 (35%), Positives = 30/57 (52%) Frame = +2 Query: 146 IPHHSISPNAELPYQTKWTRRYDMISSSAHPSIILISCTGRIGLRHDL*SPNLCVST 316 IP +S A L +QTK Y+ +S P I++ G++ +R+ L PN VST Sbjct: 155 IPLEVVSETA-LNFQTKG---YNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVST 207
>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor| with BRCT domains 1) Length = 2089 Score = 29.6 bits (65), Expect = 6.7 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -2 Query: 161 CCGGVYVGSMPMI*KPAQALLT 96 CCGG Y+ SMP KP + ++T Sbjct: 2020 CCGGTYLPSMPRSYKPQRVVIT 2041
>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1| Length = 2171 Score = 29.6 bits (65), Expect = 6.7 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -2 Query: 161 CCGGVYVGSMPMI*KPAQALLT 96 CCGG Y+ SMP KP + ++T Sbjct: 2102 CCGGTYLPSMPRSYKPQRVVIT 2123
>CCD71_MOUSE (Q8VEG0) Coiled-coil domain-containing protein 71| Length = 433 Score = 29.6 bits (65), Expect = 6.7 Identities = 18/55 (32%), Positives = 25/55 (45%) Frame = -1 Query: 519 LQVHHQLDSLQASIWKHNSQILPCSYKQGVGNEHVTARSDVRHRNVKHLRTCGPG 355 L V H SLQ S+ K P ++ GN A + + +KHL + GPG Sbjct: 186 LDVKHGAQSLQLSLAKS-----PLKVRKASGNPKSKAPRKITSKGLKHLTSKGPG 235
>OXSM_MOUSE (Q9D404) 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial| precursor (EC 2.3.1.41) (Beta-ketoacyl synthase) Length = 459 Score = 29.3 bits (64), Expect = 8.8 Identities = 20/57 (35%), Positives = 30/57 (52%) Frame = +2 Query: 146 IPHHSISPNAELPYQTKWTRRYDMISSSAHPSIILISCTGRIGLRHDL*SPNLCVST 316 +P IS A L +QTK Y+ +S P I++ G++ +R+ L PN VST Sbjct: 155 VPLEVISETALL-FQTKG---YNKVSPFFVPKILINMAAGQVSIRYKLKGPNHSVST 207
>TVB2_MOUSE (P01735) T-cell receptor beta chain V region 86T1 precursor| Length = 133 Score = 29.3 bits (64), Expect = 8.8 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 11/119 (9%) Frame = +2 Query: 50 LLNSGAKISPQNAIVWSEEPGQAFRS*ACYQHIPHHSI---SPNAELPYQTKWTRRY-DM 217 L+N+ SP+ I+ G+A +S C QH+ H+++ +AE P + + + Sbjct: 18 LMNTKITQSPRYLIL-----GRANKSLECEQHLGHNAMYWYKQSAEKPPELMFLYNLKQL 72 Query: 218 ISSSAHPSIILISC--TGRIGLRHDL*SPN-----LCVSTHGRPISAVAQFCGPGPQVL 373 I + PS + C + ++ L P C S+HG+ +S + G G +++ Sbjct: 73 IRNETVPSRFIPECPDSSKLLLHISAVDPEDSAVYFCASSHGQGVSGNTLYFGEGSRLI 131
>TMSP8_MOUSE (Q9QYZ9) Transmembrane serine protease 8 precursor (EC 3.4.21.-)| (Distal intestinal serine protease) Length = 310 Score = 29.3 bits (64), Expect = 8.8 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Frame = -2 Query: 314 WIHTNLGITGHVVDRSYLCKISVLWMD-EHCSKSYHIYGSILFGTGVQHLEKCCGGVYVG 138 W+ T G T S L +++V +D E C K YH GS L G + + C G G Sbjct: 162 WV-TGWGATQERDMASVLQELAVPLLDSEDCEKMYHTQGSSLSGERIIQSDMLCAGYVEG 220 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,471,087 Number of Sequences: 219361 Number of extensions: 2360476 Number of successful extensions: 5868 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5545 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5865 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
