ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31f06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 190 4e-45
2dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic D... 190 4e-45
3ref|XM_478366.1| Oryza sativa (japonica cultivar-group), mRNA 186 6e-44
4dbj|AK060218.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 9e-43
5gb|AY105355.1| Zea mays PCO077861 mRNA sequence 151 3e-33
6gb|AC005162.1| Homo sapiens BAC clone CTB-113D17 from 7, complet... 42 2.0
7emb|AL132948.2|CEY39B6A Caenorhabditis elegans YAC Y39B6A, compl... 42 2.0
8emb|AL808138.27| Mouse DNA sequence from clone RP23-84C18 on chr... 42 2.0
9gb|AC091002.54| Mus musculus strain C57BL/6J clone rp23-7n16 map... 42 2.0
10gb|AC006082.22| Mus musculus strain 129/Sv ES cell line CJ7 chro... 42 2.0
11ref|XM_624319.1| PREDICTED: Apis mellifera similar to CG10960-PB... 42 2.0
12gb|AC118542.20| Mus musculus strain C57BL/6J chromosome 16 clone... 42 2.0
13gb|AC087064.27| Mus musculus strain C57BL/6J chromosome 16 clone... 42 2.0
14gb|AC153630.1| Mus musculus 6 BAC RP23-289O16 (Roswell Park Canc... 40 8.0
15gb|AY714221.1| Homo sapiens peptidylprolyl isomerase D (cyclophi... 40 8.0
16gb|AC005153.2| Homo sapiens PAC clone RP4-537P9 from 7, complete... 40 8.0
17gb|AY875689.1| Microplitis demolitor bracovirus segment N, compl... 40 8.0
18gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 40 8.0
19emb|AL390125.23| Human DNA sequence from clone RP11-43O2 on chro... 40 8.0
20gb|AF112974.1| Homo sapiens cyclophilin 40 gene, promoter region... 40 8.0
21dbj|D63861.1| Homo sapiens DNA for cyclophilin 40, complete cds 40 8.0
22gb|AC107219.5| Homo sapiens BAC clone RP11-575B4 from 4, complet... 40 8.0
23gb|AC104701.5| Homo sapiens BAC clone RP11-772N1 from 4, complet... 40 8.0
24gb|AC145871.4| Pan troglodytes BAC clone RP43-6N15 from chromoso... 40 8.0
25gb|AC158678.6| Mus musculus 6 BAC RP23-142I6 (Roswell Park Cance... 40 8.0
26dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
27dbj|AP005394.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
28dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
29dbj|AK111070.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.0
30gb|M73888.1|MUSIGLHBT Mouse Ig rearranged heavy-chain gene V-D-J... 40 8.0 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  190 bits (96), Expect = 4e-45
 Identities = 129/140 (92%)
 Strand = Plus / Minus

                                                                            
Query: 438      gcttataactgcaaggcaagatctggctgttgtgcttccaaattgatgcctgaagactgt 497
                ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 19541005 gcttacaactgcaaagcaaggtctggctgttgtgcttccaaattgatgcccgaagactgt 19540946

                                                                            
Query: 498      cgagctggtggtgaacctggagagggaaacccaatgttcaagtctggacggagcatatcc 557
                ||||||||||||||||| ||||| || ||||| |||||||||||||| || |||||||||
Sbjct: 19540945 cgagctggtggtgaaccaggagaagggaacccgatgttcaagtctgggcgaagcatatcc 19540886

                                    
Query: 558      ttgtttggcttctgttgcat 577
                |||||||| |||||||||||
Sbjct: 19540885 ttgtttggtttctgttgcat 19540866



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 46/52 (88%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                    
Query: 51       tcctaaattctggtgcaaaaattt-caccgcagaatgctattgtgtggtcag 101
                |||||| ||||||||||||||||| |||||  ||| ||||| ||||||||||
Sbjct: 19541421 tcctaagttctggtgcaaaaatttccaccgtggaaagctatagtgtggtcag 19541370
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>dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0580A11
          Length = 174673

 Score =  190 bits (96), Expect = 4e-45
 Identities = 129/140 (92%)
 Strand = Plus / Minus

                                                                         
Query: 438   gcttataactgcaaggcaagatctggctgttgtgcttccaaattgatgcctgaagactgt 497
             ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 84349 gcttacaactgcaaagcaaggtctggctgttgtgcttccaaattgatgcccgaagactgt 84290

                                                                         
Query: 498   cgagctggtggtgaacctggagagggaaacccaatgttcaagtctggacggagcatatcc 557
             ||||||||||||||||| ||||| || ||||| |||||||||||||| || |||||||||
Sbjct: 84289 cgagctggtggtgaaccaggagaagggaacccgatgttcaagtctgggcgaagcatatcc 84230

                                 
Query: 558   ttgtttggcttctgttgcat 577
             |||||||| |||||||||||
Sbjct: 84229 ttgtttggtttctgttgcat 84210



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 46/52 (88%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                 
Query: 51    tcctaaattctggtgcaaaaattt-caccgcagaatgctattgtgtggtcag 101
             |||||| ||||||||||||||||| |||||  ||| ||||| ||||||||||
Sbjct: 84765 tcctaagttctggtgcaaaaatttccaccgtggaaagctatagtgtggtcag 84714
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>ref|XM_478366.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3720

 Score =  186 bits (94), Expect = 6e-44
 Identities = 124/134 (92%)
 Strand = Plus / Minus

                                                                        
Query: 444  aactgcaaggcaagatctggctgttgtgcttccaaattgatgcctgaagactgtcgagct 503
            |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3716 aactgcaaagcaaggtctggctgttgtgcttccaaattgatgcccgaagactgtcgagct 3657

                                                                        
Query: 504  ggtggtgaacctggagagggaaacccaatgttcaagtctggacggagcatatccttgttt 563
            ||||||||||| ||||| || ||||| |||||||||||||| || |||||||||||||||
Sbjct: 3656 ggtggtgaaccaggagaagggaacccgatgttcaagtctgggcgaagcatatccttgttt 3597

                          
Query: 564  ggcttctgttgcat 577
            || |||||||||||
Sbjct: 3596 ggtttctgttgcat 3583
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>dbj|AK060218.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-E04, full
            insert sequence
          Length = 1878

 Score =  182 bits (92), Expect = 9e-43
 Identities = 128/140 (91%)
 Strand = Plus / Minus

                                                                        
Query: 438  gcttataactgcaaggcaagatctggctgttgtgcttccaaattgatgcctgaagactgt 497
            ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 1243 gcttacaactgcaaagcaaggtctggctgttgtgcttccaaattgatgcccgaagactgt 1184

                                                                        
Query: 498  cgagctggtggtgaacctggagagggaaacccaatgttcaagtctggacggagcatatcc 557
            ||||||||||||||||| || || || ||||| |||||||||||||| || |||||||||
Sbjct: 1183 cgagctggtggtgaaccaggggaagggaacccgatgttcaagtctgggcgaagcatatcc 1124

                                
Query: 558  ttgtttggcttctgttgcat 577
            |||||||| |||||||||||
Sbjct: 1123 ttgtttggtttctgttgcat 1104



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 51   tcctaaattctggtgcaaaaatttc 75
            |||||| ||||||||||||||||||
Sbjct: 1659 tcctaagttctggtgcaaaaatttc 1635
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>gb|AY105355.1| Zea mays PCO077861 mRNA sequence
          Length = 1209

 Score =  151 bits (76), Expect = 3e-33
 Identities = 127/144 (88%)
 Strand = Plus / Minus

                                                                       
Query: 442 ataactgcaaggcaagatctggctgttgtgcttccaaattgatgcctgaagactgtcgag 501
           |||||||||| || || |||||||| |||||||||||||||||||| || || |||||||
Sbjct: 599 ataactgcaaagcgaggtctggctgctgtgcttccaaattgatgccggacgattgtcgag 540

                                                                       
Query: 502 ctggtggtgaacctggagagggaaacccaatgttcaagtctggacggagcatatccttgt 561
           ||||||||||||||||||| || ||||| ||||||||||| || ||||| | ||||||| 
Sbjct: 539 ctggtggtgaacctggagatgggaacccgatgttcaagtccgggcggagtacatccttgc 480

                                   
Query: 562 ttggcttctgttgcatgtgaggaa 585
            |||||||||||||||||| ||||
Sbjct: 479 ctggcttctgttgcatgtggggaa 456



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 204 gtagatatgatatgatttcgagcagtgctcatccatccat 243
           ||||| ||||| | ||||| ||||||| ||||||||||||
Sbjct: 866 gtagacatgatctcatttcaagcagtgttcatccatccat 827
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>gb|AC005162.1| Homo sapiens BAC clone CTB-113D17 from 7, complete sequence
          Length = 111682

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 425   ttacccactccctgcttataa 445
             |||||||||||||||||||||
Sbjct: 10155 ttacccactccctgcttataa 10135
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>emb|AL132948.2|CEY39B6A Caenorhabditis elegans YAC Y39B6A, complete sequence
          Length = 246237

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 55     aaattctggtgcaaaaatttc 75
              |||||||||||||||||||||
Sbjct: 217650 aaattctggtgcaaaaatttc 217630
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>emb|AL808138.27| Mouse DNA sequence from clone RP23-84C18 on chromosome 4, complete
            sequence
          Length = 84705

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 105  agcctgggcaggctttcagat 125
            |||||||||||||||||||||
Sbjct: 5865 agcctgggcaggctttcagat 5845
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>gb|AC091002.54| Mus musculus strain C57BL/6J clone rp23-7n16 map 16, complete sequence
          Length = 217939

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 504    ggtggtgaacctggagaggga 524
              |||||||||||||||||||||
Sbjct: 201031 ggtggtgaacctggagaggga 201011
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>gb|AC006082.22| Mus musculus strain 129/Sv ES cell line CJ7 chromosome 16 clone
             ct7-342a4, complete sequence
          Length = 154201

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 504   ggtggtgaacctggagaggga 524
             |||||||||||||||||||||
Sbjct: 92655 ggtggtgaacctggagaggga 92635
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>ref|XM_624319.1| PREDICTED: Apis mellifera similar to CG10960-PB, isoform B
            (LOC551936), mRNA
          Length = 1832

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 58   ttctggtgcaaaaatttcacc 78
            |||||||||||||||||||||
Sbjct: 1506 ttctggtgcaaaaatttcacc 1486
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>gb|AC118542.20| Mus musculus strain C57BL/6J chromosome 16 clone rp23-117j21, complete
             sequence
          Length = 215057

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 504   ggtggtgaacctggagaggga 524
             |||||||||||||||||||||
Sbjct: 95107 ggtggtgaacctggagaggga 95087
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>gb|AC087064.27| Mus musculus strain C57BL/6J chromosome 16 clone rp23-428i4, complete
            sequence
          Length = 211848

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 504  ggtggtgaacctggagaggga 524
            |||||||||||||||||||||
Sbjct: 4763 ggtggtgaacctggagaggga 4743
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>gb|AC153630.1| Mus musculus 6 BAC RP23-289O16 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 217496

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                              
Query: 448    gcaaggcaagatctggctgttgtgcttccaaa 479
              |||||||||||||||||| |||||||| ||||
Sbjct: 149266 gcaaggcaagatctggct-ttgtgcttacaaa 149236
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>gb|AY714221.1| Homo sapiens peptidylprolyl isomerase D (cyclophilin D) (PPID)
           gene, complete cds
          Length = 17435

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 369 tccttagatgcttcacattt 388
           ||||||||||||||||||||
Sbjct: 106 tccttagatgcttcacattt 87
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>gb|AC005153.2| Homo sapiens PAC clone RP4-537P9 from 7, complete sequence
          Length = 124191

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   atccactcatggacgtccca 329
             ||||||||||||||||||||
Sbjct: 14101 atccactcatggacgtccca 14120
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>gb|AY875689.1| Microplitis demolitor bracovirus segment N, complete sequence
          Length = 17355

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 470  tgcttccaaattgatgcctg 489
            ||||||||||||||||||||
Sbjct: 8559 tgcttccaaattgatgcctg 8578
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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 496     gtcgagctggtggtgaacct 515
               ||||||||||||||||||||
Sbjct: 2679511 gtcgagctggtggtgaacct 2679492
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>emb|AL390125.23| Human DNA sequence from clone RP11-43O2 on chromosome 6, complete
              sequence
          Length = 140782

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 251    atatcttgcacaggtaggat 270
              ||||||||||||||||||||
Sbjct: 125529 atatcttgcacaggtaggat 125548
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>gb|AF112974.1| Homo sapiens cyclophilin 40 gene, promoter region and partial cds
          Length = 4881

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 369  tccttagatgcttcacattt 388
            ||||||||||||||||||||
Sbjct: 3658 tccttagatgcttcacattt 3639
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>dbj|D63861.1| Homo sapiens DNA for cyclophilin 40, complete cds
          Length = 17133

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 369 tccttagatgcttcacattt 388
           ||||||||||||||||||||
Sbjct: 693 tccttagatgcttcacattt 674
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>gb|AC107219.5| Homo sapiens BAC clone RP11-575B4 from 4, complete sequence
          Length = 187431

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   tccttagatgcttcacattt 388
             ||||||||||||||||||||
Sbjct: 89215 tccttagatgcttcacattt 89234
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>gb|AC104701.5| Homo sapiens BAC clone RP11-772N1 from 4, complete sequence
          Length = 152547

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 439   cttataactgcaaggcaaga 458
             ||||||||||||||||||||
Sbjct: 75182 cttataactgcaaggcaaga 75201
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>gb|AC145871.4| Pan troglodytes BAC clone RP43-6N15 from chromosome 7, complete sequence
          Length = 230197

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    atccactcatggacgtccca 329
              ||||||||||||||||||||
Sbjct: 190316 atccactcatggacgtccca 190297
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>gb|AC158678.6| Mus musculus 6 BAC RP23-142I6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 217586

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                              
Query: 448    gcaaggcaagatctggctgttgtgcttccaaa 479
              |||||||||||||||||| |||||||| ||||
Sbjct: 153968 gcaaggcaagatctggct-ttgtgcttacaaa 153998
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 202     ccgtagatatgatatgattt 221
               ||||||||||||||||||||
Sbjct: 7236055 ccgtagatatgatatgattt 7236074
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>dbj|AP005394.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0620H05
          Length = 161808

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 202    ccgtagatatgatatgattt 221
              ||||||||||||||||||||
Sbjct: 135992 ccgtagatatgatatgattt 136011
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>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0035N08
          Length = 136267

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   ccgtagatatgatatgattt 221
             ||||||||||||||||||||
Sbjct: 11863 ccgtagatatgatatgattt 11882
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>dbj|AK111070.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-E05, full
           insert sequence
          Length = 532

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 202 ccgtagatatgatatgattt 221
           ||||||||||||||||||||
Sbjct: 474 ccgtagatatgatatgattt 455
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>gb|M73888.1|MUSIGLHBT Mouse Ig rearranged heavy-chain gene V-D-J region, isolate 2ZSP2
          Length = 333

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 240 ccataatactgatatcttgcacag 263
           |||| |||||||||||||||||||
Sbjct: 305 ccatcatactgatatcttgcacag 282


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,390,973
Number of Sequences: 3902068
Number of extensions: 5390973
Number of successful extensions: 93966
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 93834
Number of HSP's gapped (non-prelim): 134
length of query: 588
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 565
effective length of database: 17,143,297,704
effective search space: 9685963202760
effective search space used: 9685963202760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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