ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GAT29_ARATH (Q5PP38) GATA transcription factor 29 33 0.27
2GAT28_ARATH (Q8W4H1) GATA transcription factor 28 29 5.1

>GAT29_ARATH (Q5PP38) GATA transcription factor 29|
          Length = 470

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 18/27 (66%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = -2

Query: 363 YMDN--SDQDLLLEVPLNARQPDAELL 289
           Y DN  SDQDLLL+VP N   P AELL
Sbjct: 441 YEDNDISDQDLLLDVPSNGSFPQAELL 467



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>GAT28_ARATH (Q8W4H1) GATA transcription factor 28|
          Length = 510

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = -2

Query: 354 NSDQDLLL-EVPLNARQPDAELLYQ 283
           +SDQDLLL ++P N   P AELL+Q
Sbjct: 485 SSDQDLLLLDLPSNGSFPQAELLHQ 509


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,002,823
Number of Sequences: 219361
Number of extensions: 1097390
Number of successful extensions: 2254
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2254
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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