ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_483366.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.87
2emb|CR382340.7| Zebrafish DNA sequence from clone DKEY-151G10 in... 42 0.87
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.87
4dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.87
5dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.87
6dbj|AK069912.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.87
7emb|CR735113.6| Zebrafish DNA sequence from clone CH211-232J17 i... 42 0.87
8gb|AC108034.2| Homo sapiens BAC clone RP11-137J16 from 4, comple... 40 3.4

>ref|XM_483366.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1878

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 56   aaatacatccgttactctgttaagg 80
            ||||||||| |||||||||||||||
Sbjct: 1812 aaatacatctgttactctgttaagg 1788



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>emb|CR382340.7| Zebrafish DNA sequence from clone DKEY-151G10 in linkage group 23,
             complete sequence
          Length = 158509

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 117   aacagtacagtacagtaatga 137
             |||||||||||||||||||||
Sbjct: 72353 aacagtacagtacagtaatga 72373



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 56       aaatacatccgttactctgttaagg 80
                ||||||||| |||||||||||||||
Sbjct: 25851877 aaatacatctgttactctgttaagg 25851901



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>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1003_A09
          Length = 150755

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 56    aaatacatccgttactctgttaagg 80
             ||||||||| |||||||||||||||
Sbjct: 37664 aaatacatctgttactctgttaagg 37688



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>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0689E12
          Length = 147516

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 56     aaatacatccgttactctgttaagg 80
              ||||||||| |||||||||||||||
Sbjct: 124088 aaatacatctgttactctgttaagg 124112



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>dbj|AK069912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037G11, full
            insert sequence
          Length = 1877

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 56   aaatacatccgttactctgttaagg 80
            ||||||||| |||||||||||||||
Sbjct: 1811 aaatacatctgttactctgttaagg 1787



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>emb|CR735113.6| Zebrafish DNA sequence from clone CH211-232J17 in linkage group 19,
             complete sequence
          Length = 55980

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 113   tgtcaacagtacagtacagta 133
             |||||||||||||||||||||
Sbjct: 54769 tgtcaacagtacagtacagta 54749



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>gb|AC108034.2| Homo sapiens BAC clone RP11-137J16 from 4, complete sequence
          Length = 164396

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   acaagcaaatgaaaagctct 186
             ||||||||||||||||||||
Sbjct: 11716 acaagcaaatgaaaagctct 11697


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,891,114
Number of Sequences: 3902068
Number of extensions: 1891114
Number of successful extensions: 34920
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34900
Number of HSP's gapped (non-prelim): 20
length of query: 264
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 242
effective length of database: 17,147,199,772
effective search space: 4149622344824
effective search space used: 4149622344824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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