ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30p24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YCE5_YEAST (P25574) Hypothetical 87.2 kDa protein in APA1/DTP-PD... 40 0.004
2YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in c... 32 1.2
3CYPC_BACSU (O31440) Cytochrome P450 152A1 (EC 1.14.-.-) (P450BsB... 30 3.5
4CYNT_SYNP7 (P27134) Carbonic anhydrase (EC 4.2.1.1) 29 7.8

>YCE5_YEAST (P25574) Hypothetical 87.2 kDa protein in APA1/DTP-PDI1 intergenic|
           region
          Length = 760

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 16/39 (41%), Positives = 27/39 (69%)
 Frame = -1

Query: 536 IVSIPAKLESTTLVFTYGVDLFYTRLAPSRTYDSLTDEF 420
           ++SIP  LEST+++   G+D+F TR+ PS  +D ++  F
Sbjct: 687 LISIPTNLESTSIICDLGLDVFCTRITPSGQFDLMSPTF 725



to top

>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III|
          Length = 654

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 6   FYXKKVHVEYENFNKLQSTNILLKSLVAEVHFITYKDATSDLPVL*C 146
           ++ K++   +  F K++   IL K  +A VHF+  +DA   +  L C
Sbjct: 310 YHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLSC 356



to top

>CYPC_BACSU (O31440) Cytochrome P450 152A1 (EC 1.14.-.-) (P450BsBeta) (Fatty|
           acid beta-hydroxylase)
          Length = 417

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +2

Query: 161 LTAQVPHAVSSQESNFTLK---CYINNRTLALNKRKITMSTRAQNFICITTLEAS 316
           +  Q+PH  S   S   LK    +I NRT   N          +NFIC+T  EA+
Sbjct: 1   MNEQIPHDKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAA 55



to top

>CYNT_SYNP7 (P27134) Carbonic anhydrase (EC 4.2.1.1)|
          Length = 272

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
 Frame = -3

Query: 327 VEVIEASNVVMQMKFWALVDIVIFLLFSARVLLFM*HFKVKFD--------SWDDTA*GT 172
           VE++ A NV+ Q++      IV   LF  ++ +F   ++V+          S DDT    
Sbjct: 147 VEILVAENVLTQIENLKTYPIVRSRLFQGKLQIFGWIYEVESGEVLQISRTSSDDTGIDE 206

Query: 171 CAVRNPGHDIKELADHSWHPYT 106
           C VR PG   K +      P T
Sbjct: 207 CPVRLPGSQEKAILGRCVVPLT 228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,227,352
Number of Sequences: 219361
Number of extensions: 1347653
Number of successful extensions: 2809
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2809
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top