ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30p22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|CP000302.1| Shewanella denitrificans OS217, complete genome 44 0.63
2emb|AL390838.26| Human DNA sequence from clone RP11-158D2 on chr... 44 0.63
3gb|AC117491.9| Homo sapiens 12 BAC RP11-54A9 (Roswell Park Cance... 44 0.63
4ref|XM_450048.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.5
5emb|AL627346.14| Mouse DNA sequence from clone RP23-313I9 on chr... 42 2.5
6gb|AC152954.1| Mus musculus 6 BAC RP23-296N5 (Roswell Park Cance... 42 2.5
7dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
8gb|AC092442.5| Homo sapiens BAC clone RP11-488I16 from 4, comple... 42 2.5
9dbj|AP005884.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
10dbj|AP005789.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
11dbj|AK101351.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.5
12dbj|AK101139.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.5
13ref|NM_180252.1| Arabidopsis thaliana RAP2.2; DNA binding / tran... 40 9.8
14ref|NM_180251.1| Arabidopsis thaliana RAP2.2; DNA binding / tran... 40 9.8
15ref|NM_112281.2| Arabidopsis thaliana RAP2.2; DNA binding / tran... 40 9.8
16ref|NM_129610.2| Arabidopsis thaliana unknown protein AT2G40480 ... 40 9.8
17gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 9.8
18gb|AY735595.1| Arabidopsis thaliana hypothetical protein AT2G404... 40 9.8
19ref|XM_567398.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 9.8
20gb|AC126027.4| Mus musculus BAC clone RP24-490F3 from chromosome... 40 9.8
21gb|AC112257.5| Mus musculus BAC clone RP23-43A18 from 16, comple... 40 9.8
22gb|AC004932.4| Homo sapiens PAC clone RP5-943F2 from 7, complete... 40 9.8
23gb|AC149804.11| Medicago truncatula clone mth2-73h22, complete s... 40 9.8
24gb|BT000374.1| Arabidopsis thaliana transcription factor EREBP-l... 40 9.8
25emb|AL645739.9| Mouse DNA sequence from clone RP23-213I10 on chr... 40 9.8
26emb|AL590147.7| Zebrafish DNA sequence from clone RP71-21D15 in ... 40 9.8
27gb|AC007187.5| Arabidopsis thaliana chromosome 2 clone F7E22 map... 40 9.8
28gb|AC002336.3| Arabidopsis thaliana chromosome 2 clone T2P4 map ... 40 9.8
29gb|AY054539.1| Arabidopsis thaliana transcription factor EREBP-l... 40 9.8
30emb|BX825990.1|CNS0A6BB Arabidopsis thaliana Full-length cDNA Co... 40 9.8
31emb|BX823280.1|CNS0A4T0 Arabidopsis thaliana Full-length cDNA Co... 40 9.8
32gb|AC112510.9| Homo sapiens 3 BAC RP11-432A8 (Roswell Park Cance... 40 9.8
33gb|AY085580.1| Arabidopsis thaliana clone 158240 mRNA, complete ... 40 9.8
34dbj|AB022220.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 9.8
35gb|AC156038.2| Mus musculus BAC clone RP23-250I2 from 16, comple... 40 9.8
36dbj|AP001674.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 9.8
37emb|BX005067.6| Zebrafish DNA sequence from clone CH211-182K2 in... 40 9.8
38gb|AF003095.1|AF003095 Arabidopsis thaliana AP2 domain containin... 40 9.8
39emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 40 9.8
40dbj|AP006653.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 9.8
41emb|AL645972.10| Mouse DNA sequence from clone RP23-274J5 on chr... 40 9.8
42dbj|AP000431.3| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 9.8 
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 71     aatgttagtcttaatatttgtt 92
              ||||||||||||||||||||||
Sbjct: 885281 aatgttagtcttaatatttgtt 885302
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>emb|AL390838.26| Human DNA sequence from clone RP11-158D2 on chromosome 9 Contains a
             novel pseudogene and a novel gene, complete sequence
          Length = 193709

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 518   ataaaggacaacaccatatgtt 539
             ||||||||||||||||||||||
Sbjct: 20751 ataaaggacaacaccatatgtt 20730
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>gb|AC117491.9| Homo sapiens 12 BAC RP11-54A9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 115525

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 65    atttgcaatgttagtcttaata 86
             ||||||||||||||||||||||
Sbjct: 56668 atttgcaatgttagtcttaata 56647
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>ref|XM_450048.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3537

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 193  tactgaaggagttaaacacag 213
            |||||||||||||||||||||
Sbjct: 1499 tactgaaggagttaaacacag 1519
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>emb|AL627346.14| Mouse DNA sequence from clone RP23-313I9 on chromosome 11, complete
             sequence
          Length = 100292

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 279   cctcatcagagaaacagaact 299
             |||||||||||||||||||||
Sbjct: 29258 cctcatcagagaaacagaact 29238
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>gb|AC152954.1| Mus musculus 6 BAC RP23-296N5 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 203474

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 285    cagagaaacagaacttgctat 305
              |||||||||||||||||||||
Sbjct: 127400 cagagaaacagaacttgctat 127380
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 193     tactgaaggagttaaacacag 213
               |||||||||||||||||||||
Sbjct: 1251927 tactgaaggagttaaacacag 1251947
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>gb|AC092442.5| Homo sapiens BAC clone RP11-488I16 from 4, complete sequence
          Length = 160193

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 248   tgaatatataaattcctcatccatttcca 276
             ||||||||| | |||||||||||||||||
Sbjct: 12818 tgaatatatcatttcctcatccatttcca 12846
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>dbj|AP005884.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0598D02
          Length = 155238

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 193   tactgaaggagttaaacacag 213
             |||||||||||||||||||||
Sbjct: 22931 tactgaaggagttaaacacag 22951
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>dbj|AP005789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0563F09
          Length = 174905

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 193   tactgaaggagttaaacacag 213
             |||||||||||||||||||||
Sbjct: 82801 tactgaaggagttaaacacag 82821
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>dbj|AK101351.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034O16, full
            insert sequence
          Length = 3539

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 193  tactgaaggagttaaacacag 213
            |||||||||||||||||||||
Sbjct: 1500 tactgaaggagttaaacacag 1520
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>dbj|AK101139.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026L02, full
           insert sequence
          Length = 2217

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 193 tactgaaggagttaaacacag 213
           |||||||||||||||||||||
Sbjct: 713 tactgaaggagttaaacacag 733
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>ref|NM_180252.1| Arabidopsis thaliana RAP2.2; DNA binding / transcription factor
            AT3G14230 (RAP2.2) transcript variant AT3G14230.3 mRNA,
            complete cds
          Length = 1629

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  acgctataacaaagatcaaa 345
            ||||||||||||||||||||
Sbjct: 1551 acgctataacaaagatcaaa 1532
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>ref|NM_180251.1| Arabidopsis thaliana RAP2.2; DNA binding / transcription factor
            AT3G14230 (RAP2.2) transcript variant AT3G14230.2 mRNA,
            complete cds
          Length = 1632

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  acgctataacaaagatcaaa 345
            ||||||||||||||||||||
Sbjct: 1554 acgctataacaaagatcaaa 1535
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>ref|NM_112281.2| Arabidopsis thaliana RAP2.2; DNA binding / transcription factor
            AT3G14230 (RAP2.2) transcript variant AT3G14230.1 mRNA,
            complete cds
          Length = 1644

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  acgctataacaaagatcaaa 345
            ||||||||||||||||||||
Sbjct: 1566 acgctataacaaagatcaaa 1547
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>ref|NM_129610.2| Arabidopsis thaliana unknown protein AT2G40480 mRNA, complete cds
          Length = 1766

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 193  tactgaaggagttaaacacagtaa 216
            |||||||||||||||||| |||||
Sbjct: 1114 tactgaaggagttaaacaaagtaa 1137
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>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete
              sequence
          Length = 1085720

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 688    ctgcaccattgccgtcacct 707
              ||||||||||||||||||||
Sbjct: 995487 ctgcaccattgccgtcacct 995506
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>gb|AY735595.1| Arabidopsis thaliana hypothetical protein AT2G40480 mRNA, complete
            cds
          Length = 1807

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 193  tactgaaggagttaaacacagtaa 216
            |||||||||||||||||| |||||
Sbjct: 1115 tactgaaggagttaaacaaagtaa 1138
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>ref|XM_567398.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNJ03180) partial mRNA
          Length = 2035

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 688 ctgcaccattgccgtcacct 707
           ||||||||||||||||||||
Sbjct: 729 ctgcaccattgccgtcacct 710
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>gb|AC126027.4| Mus musculus BAC clone RP24-490F3 from chromosome 18, complete sequence
          Length = 172078

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 376   ctcctttcagtgcagggaaa 395
             ||||||||||||||||||||
Sbjct: 70330 ctcctttcagtgcagggaaa 70349
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>gb|AC112257.5| Mus musculus BAC clone RP23-43A18 from 16, complete sequence
          Length = 199117

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   cagaaccatctgaatatata 257
             ||||||||||||||||||||
Sbjct: 15375 cagaaccatctgaatatata 15394
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>gb|AC004932.4| Homo sapiens PAC clone RP5-943F2 from 7, complete sequence
          Length = 151183

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 376    ctcctttcagtgcagggaaa 395
              ||||||||||||||||||||
Sbjct: 113414 ctcctttcagtgcagggaaa 113433
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>gb|AC149804.11| Medicago truncatula clone mth2-73h22, complete sequence
          Length = 121763

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    taatatttgttaacaaactc 101
             ||||||||||||||||||||
Sbjct: 58052 taatatttgttaacaaactc 58033
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>gb|BT000374.1| Arabidopsis thaliana transcription factor EREBP-like protein
            (At3g14230) mRNA, complete cds
          Length = 1437

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  acgctataacaaagatcaaa 345
            ||||||||||||||||||||
Sbjct: 1418 acgctataacaaagatcaaa 1399
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>emb|AL645739.9| Mouse DNA sequence from clone RP23-213I10 on chromosome 11 Contains the
              Trpv3 gene for transient receptor potential cation channel
              subfamily V member 3, the Aspa gene for aspartoacylase
              (aminoacylase) 2, a novel gene, the genes for olfactory
              receptor MOR135-11, 12, 13, 2, 1, three olfactory receptor
              MOR135 pseudogenes and a CpG island, complete sequence
          Length = 208137

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 597    tcaccatcttgtggcatgga 616
              ||||||||||||||||||||
Sbjct: 105922 tcaccatcttgtggcatgga 105903
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>emb|AL590147.7| Zebrafish DNA sequence from clone RP71-21D15 in linkage group 24
             Contains part of a novel gene similar to human, rat and
             mouse CTNND2 (catenin delta 2, cadherin-associated protein
             delta 2, neural plakophilin-related arm-repeat protein)
             and a CpG island, complete sequence
          Length = 148485

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    ttagtcttaatatttgttaacaaa 98
             |||||||| |||||||||||||||
Sbjct: 12540 ttagtcttcatatttgttaacaaa 12517
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>gb|AC007187.5| Arabidopsis thaliana chromosome 2 clone F7E22 map mi421, complete
             sequence
          Length = 98432

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 579   gcagcaacacgaagaaaatc 598
             ||||||||||||||||||||
Sbjct: 78111 gcagcaacacgaagaaaatc 78092
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>gb|AC002336.3| Arabidopsis thaliana chromosome 2 clone T2P4 map CIC10A06, complete
             sequence
          Length = 84675

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 193   tactgaaggagttaaacacagtaa 216
             |||||||||||||||||| |||||
Sbjct: 51320 tactgaaggagttaaacaaagtaa 51297
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>gb|AY054539.1| Arabidopsis thaliana transcription factor EREBP-like protein
            (At3g14230; MLN21.1) mRNA, complete cds
          Length = 1509

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  acgctataacaaagatcaaa 345
            ||||||||||||||||||||
Sbjct: 1438 acgctataacaaagatcaaa 1419
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>emb|BX825990.1|CNS0A6BB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTSIL77ZG04 of Silique of strain col-0 of Arabidopsis
            thaliana (thale cress)
          Length = 1585

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  acgctataacaaagatcaaa 345
            ||||||||||||||||||||
Sbjct: 1540 acgctataacaaagatcaaa 1521
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>emb|BX823280.1|CNS0A4T0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS1ZA09 of Adult vegetative tissue of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1581

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  acgctataacaaagatcaaa 345
            ||||||||||||||||||||
Sbjct: 1531 acgctataacaaagatcaaa 1512
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>gb|AC112510.9| Homo sapiens 3 BAC RP11-432A8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 192749

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    tgagaaatactgaaggagtt 205
              ||||||||||||||||||||
Sbjct: 121128 tgagaaatactgaaggagtt 121147
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>gb|AY085580.1| Arabidopsis thaliana clone 158240 mRNA, complete sequence
          Length = 1636

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  acgctataacaaagatcaaa 345
            ||||||||||||||||||||
Sbjct: 1566 acgctataacaaagatcaaa 1547
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>dbj|AB022220.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLN21
          Length = 83906

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 326  acgctataacaaagatcaaa 345
            ||||||||||||||||||||
Sbjct: 1322 acgctataacaaagatcaaa 1341
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>gb|AC156038.2| Mus musculus BAC clone RP23-250I2 from 16, complete sequence
          Length = 202844

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    cagaaccatctgaatatata 257
              ||||||||||||||||||||
Sbjct: 120769 cagaaccatctgaatatata 120788
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>dbj|AP001674.1| Homo sapiens genomic DNA, chromosome 21q, section 18/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 368    atcatgtcctcctttcagtg 387
              ||||||||||||||||||||
Sbjct: 338994 atcatgtcctcctttcagtg 339013
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>emb|BX005067.6| Zebrafish DNA sequence from clone CH211-182K2 in linkage group 24,
             complete sequence
          Length = 162692

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    ttagtcttaatatttgttaacaaa 98
             |||||||| |||||||||||||||
Sbjct: 28496 ttagtcttcatatttgttaacaaa 28473
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>gb|AF003095.1|AF003095 Arabidopsis thaliana AP2 domain containing protein RAP2.2 mRNA,
            partial cds
          Length = 1101

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  acgctataacaaagatcaaa 345
            ||||||||||||||||||||
Sbjct: 1032 acgctataacaaagatcaaa 1013
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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 618    gtcagattttgaccagcaaa 637
              ||||||||||||||||||||
Sbjct: 558708 gtcagattttgaccagcaaa 558727
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>dbj|AP006653.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT05M24, TM0338,
             complete sequence
          Length = 94745

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 331   ataacaaagatcaaacatgc 350
             ||||||||||||||||||||
Sbjct: 35912 ataacaaagatcaaacatgc 35931



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 331   ataacaaagatcaaacatgc 350
             ||||||||||||||||||||
Sbjct: 26887 ataacaaagatcaaacatgc 26906
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>emb|AL645972.10| Mouse DNA sequence from clone RP23-274J5 on chromosome 11, complete
              sequence
          Length = 192586

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 283    atcagagaaacagaacttgctatt 306
              ||||||||||||||| ||||||||
Sbjct: 166879 atcagagaaacagaaattgctatt 166856
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>dbj|AP000431.3| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B28M9,
             LL56-APP region, complete sequence
          Length = 152487

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   atcatgtcctcctttcagtg 387
             ||||||||||||||||||||
Sbjct: 39361 atcatgtcctcctttcagtg 39380


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,556,439
Number of Sequences: 3902068
Number of extensions: 6556439
Number of successful extensions: 122859
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122698
Number of HSP's gapped (non-prelim): 161
length of query: 714
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 691
effective length of database: 17,143,297,704
effective search space: 11846018713464
effective search space used: 11846018713464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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