| Clone Name | rbags31e24 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK058904.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-C06, full insert sequence Length = 721 Score = 224 bits (113), Expect = 3e-55 Identities = 315/381 (82%), Gaps = 1/381 (0%) Strand = Plus / Minus Query: 226 acatcaaacatcaaccattaggctgaaggaatccgccatcgcaaagaactcttcctgaac 285 |||||| |||||| ||| ||||||||| ||||| ||||| |||| |||||||| | |||| Sbjct: 548 acatcatacatcagccactaggctgaatgaatctgccattgcaaggaactctttccgaac 489 Query: 286 cgacctccatgccgactccggtgcctgggcattcaaggtgtaaagtttgccgtctctcgc 345 || | |||| ||||||||||| ||||| || |||| |||||| ||||| || || |||| Sbjct: 488 cgccttccacgccgactccggagcctgagcgttcagggtgtatagtttcccatccttcgc 429 Query: 346 gcagcacaccgccacattgtgccgtcggaaggaagggctctcgactcggaactccagctt 405 ||||||||| || |||||| | ||||| ||||||||||| || ||||||||||| ||||| Sbjct: 428 gcagcacactgcgacattgcgtcgtcgaaaggaagggctttcaactcggaactctagctt 369 Query: 406 gtagtatttcacattgttcacggtgtcttctctcaacgcggcaccgatcagagtggcgct 465 ||||||||||||||||||| | | |||||||||| || ||| | | ||||||||| | Sbjct: 368 gtagtatttcacattgttcgctggatcttctctcagggcagcatcaagaagagtggcgtt 309 Query: 466 gatatccgggttccgctttgtccttgcgatcctcctcagcaccacttccccgacatcttt 525 ||||| | | |||||||||| |||||||||| || || ||||| ||||| |||||||| Sbjct: 308 tatatctgcgccccgctttgtctttgcgatccttctgagaaccacctccccaacatcttt 249 Query: 526 aggaccgccaaaagactcaatcgagaagtcttgtgggacggtcgacacaatgacgctgac 585 ||| || ||||||| ||| |||||||| ||||||||||| | || || ||||| ||||| Sbjct: 248 agggccaccaaaagcctcgatcgagaa-tcttgtgggacaggtgaaacgatgacactgac 190 Query: 586 gttgagctccccgttggatcc 606 ||||||||||| ||||||| Sbjct: 189 attgagctccccactggatcc 169
>ref|NM_190044.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 945 Score = 222 bits (112), Expect = 1e-54 Identities = 307/372 (82%) Strand = Plus / Minus Query: 235 atcaaccattaggctgaaggaatccgccatcgcaaagaactcttcctgaaccgacctcca 294 |||| ||| ||||||||| ||||| ||||| |||| |||||||| | |||||| | |||| Sbjct: 816 atcagccactaggctgaatgaatctgccattgcaaggaactctttccgaaccgccttcca 757 Query: 295 tgccgactccggtgcctgggcattcaaggtgtaaagtttgccgtctctcgcgcagcacac 354 ||||||||||| ||||| || |||| |||||| ||||| || || ||||||||||||| Sbjct: 756 cgccgactccggagcctgagcgttcagggtgtatagtttcccatccttcgcgcagcacac 697 Query: 355 cgccacattgtgccgtcggaaggaagggctctcgactcggaactccagcttgtagtattt 414 || |||||| | ||||| ||||||||||| || ||||||||||| |||||||||||||| Sbjct: 696 tgcgacattgcgtcgtcgaaaggaagggctttcaactcggaactctagcttgtagtattt 637 Query: 415 cacattgttcacggtgtcttctctcaacgcggcaccgatcagagtggcgctgatatccgg 474 |||||||||| | | |||||||||| || ||| | | ||||||||| | ||||| | Sbjct: 636 cacattgttcgctggatcttctctcagggcagcatcaagaagagtggcgtttatatctgc 577 Query: 475 gttccgctttgtccttgcgatcctcctcagcaccacttccccgacatctttaggaccgcc 534 | |||||||||| |||||||||| || || ||||| ||||| ||||||||||| || || Sbjct: 576 gccccgctttgtctttgcgatccttctgagaaccacctccccaacatctttagggccacc 517 Query: 535 aaaagactcaatcgagaagtcttgtgggacggtcgacacaatgacgctgacgttgagctc 594 ||||| ||| |||||||| ||||||||||| | || || ||||| ||||| |||||||| Sbjct: 516 aaaagcctcgatcgagaaatcttgtgggacaggtgaaacgatgacactgacattgagctc 457 Query: 595 cccgttggatcc 606 ||| ||||||| Sbjct: 456 cccactggatcc 445
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 194 bits (98), Expect = 2e-46 Identities = 260/314 (82%) Strand = Plus / Minus Query: 226 acatcaaacatcaaccattaggctgaaggaatccgccatcgcaaagaactcttcctgaac 285 |||||| |||||| ||| ||||||||| ||||| ||||| |||| |||||||| | |||| Sbjct: 40989494 acatcatacatcagccactaggctgaatgaatctgccattgcaaggaactctttccgaac 40989435 Query: 286 cgacctccatgccgactccggtgcctgggcattcaaggtgtaaagtttgccgtctctcgc 345 || | |||| ||||||||||| ||||| || |||| |||||| ||||| || || |||| Sbjct: 40989434 cgccttccacgccgactccggagcctgagcgttcagggtgtatagtttcccatccttcgc 40989375 Query: 346 gcagcacaccgccacattgtgccgtcggaaggaagggctctcgactcggaactccagctt 405 ||||||||| || |||||| | ||||| ||||||||||| || ||||||||||| ||||| Sbjct: 40989374 gcagcacactgcgacattgcgtcgtcgaaaggaagggctttcaactcggaactctagctt 40989315 Query: 406 gtagtatttcacattgttcacggtgtcttctctcaacgcggcaccgatcagagtggcgct 465 ||||||||||||||||||| | | |||||||||| || ||| | | ||||||||| | Sbjct: 40989314 gtagtatttcacattgttcgctggatcttctctcagggcagcatcaagaagagtggcgtt 40989255 Query: 466 gatatccgggttccgctttgtccttgcgatcctcctcagcaccacttccccgacatcttt 525 ||||| | | |||||||||| |||||||||| || || ||||| ||||| |||||||| Sbjct: 40989254 tatatctgcgccccgctttgtctttgcgatccttctgagaaccacctccccaacatcttt 40989195 Query: 526 aggaccgccaaaag 539 ||| || ||||||| Sbjct: 40989194 agggccaccaaaag 40989181 Score = 40.1 bits (20), Expect = 8.3 Identities = 50/60 (83%) Strand = Plus / Minus Query: 547 cgagaagtcttgtgggacggtcgacacaatgacgctgacgttgagctccccgttggatcc 606 |||||| ||||||||||| | || || ||||| ||||| ||||||||||| ||||||| Sbjct: 40988919 cgagaaatcttgtgggacaggtgaaacgatgacactgacattgagctccccactggatcc 40988860
>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492G09 Length = 142239 Score = 194 bits (98), Expect = 2e-46 Identities = 260/314 (82%) Strand = Plus / Minus Query: 226 acatcaaacatcaaccattaggctgaaggaatccgccatcgcaaagaactcttcctgaac 285 |||||| |||||| ||| ||||||||| ||||| ||||| |||| |||||||| | |||| Sbjct: 26424 acatcatacatcagccactaggctgaatgaatctgccattgcaaggaactctttccgaac 26365 Query: 286 cgacctccatgccgactccggtgcctgggcattcaaggtgtaaagtttgccgtctctcgc 345 || | |||| ||||||||||| ||||| || |||| |||||| ||||| || || |||| Sbjct: 26364 cgccttccacgccgactccggagcctgagcgttcagggtgtatagtttcccatccttcgc 26305 Query: 346 gcagcacaccgccacattgtgccgtcggaaggaagggctctcgactcggaactccagctt 405 ||||||||| || |||||| | ||||| ||||||||||| || ||||||||||| ||||| Sbjct: 26304 gcagcacactgcgacattgcgtcgtcgaaaggaagggctttcaactcggaactctagctt 26245 Query: 406 gtagtatttcacattgttcacggtgtcttctctcaacgcggcaccgatcagagtggcgct 465 ||||||||||||||||||| | | |||||||||| || ||| | | ||||||||| | Sbjct: 26244 gtagtatttcacattgttcgctggatcttctctcagggcagcatcaagaagagtggcgtt 26185 Query: 466 gatatccgggttccgctttgtccttgcgatcctcctcagcaccacttccccgacatcttt 525 ||||| | | |||||||||| |||||||||| || || ||||| ||||| |||||||| Sbjct: 26184 tatatctgcgccccgctttgtctttgcgatccttctgagaaccacctccccaacatcttt 26125 Query: 526 aggaccgccaaaag 539 ||| || ||||||| Sbjct: 26124 agggccaccaaaag 26111 Score = 40.1 bits (20), Expect = 8.3 Identities = 50/60 (83%) Strand = Plus / Minus Query: 547 cgagaagtcttgtgggacggtcgacacaatgacgctgacgttgagctccccgttggatcc 606 |||||| ||||||||||| | || || ||||| ||||| ||||||||||| ||||||| Sbjct: 25849 cgagaaatcttgtgggacaggtgaaacgatgacactgacattgagctccccactggatcc 25790
>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423A12 Length = 178649 Score = 194 bits (98), Expect = 2e-46 Identities = 260/314 (82%) Strand = Plus / Minus Query: 226 acatcaaacatcaaccattaggctgaaggaatccgccatcgcaaagaactcttcctgaac 285 |||||| |||||| ||| ||||||||| ||||| ||||| |||| |||||||| | |||| Sbjct: 117919 acatcatacatcagccactaggctgaatgaatctgccattgcaaggaactctttccgaac 117860 Query: 286 cgacctccatgccgactccggtgcctgggcattcaaggtgtaaagtttgccgtctctcgc 345 || | |||| ||||||||||| ||||| || |||| |||||| ||||| || || |||| Sbjct: 117859 cgccttccacgccgactccggagcctgagcgttcagggtgtatagtttcccatccttcgc 117800 Query: 346 gcagcacaccgccacattgtgccgtcggaaggaagggctctcgactcggaactccagctt 405 ||||||||| || |||||| | ||||| ||||||||||| || ||||||||||| ||||| Sbjct: 117799 gcagcacactgcgacattgcgtcgtcgaaaggaagggctttcaactcggaactctagctt 117740 Query: 406 gtagtatttcacattgttcacggtgtcttctctcaacgcggcaccgatcagagtggcgct 465 ||||||||||||||||||| | | |||||||||| || ||| | | ||||||||| | Sbjct: 117739 gtagtatttcacattgttcgctggatcttctctcagggcagcatcaagaagagtggcgtt 117680 Query: 466 gatatccgggttccgctttgtccttgcgatcctcctcagcaccacttccccgacatcttt 525 ||||| | | |||||||||| |||||||||| || || ||||| ||||| |||||||| Sbjct: 117679 tatatctgcgccccgctttgtctttgcgatccttctgagaaccacctccccaacatcttt 117620 Query: 526 aggaccgccaaaag 539 ||| || ||||||| Sbjct: 117619 agggccaccaaaag 117606 Score = 40.1 bits (20), Expect = 8.3 Identities = 50/60 (83%) Strand = Plus / Minus Query: 547 cgagaagtcttgtgggacggtcgacacaatgacgctgacgttgagctccccgttggatcc 606 |||||| ||||||||||| | || || ||||| ||||| ||||||||||| ||||||| Sbjct: 117344 cgagaaatcttgtgggacaggtgaaacgatgacactgacattgagctccccactggatcc 117285
>emb|AL732559.9| Mouse DNA sequence from clone RP23-9A5 on chromosome 2, complete sequence Length = 167364 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 100 aacatttatttatgttacattttact 125 ||||||||||||| |||||||||||| Sbjct: 128934 aacatttatttatattacattttact 128909
>gb|AC165351.2| Mus musculus BAC clone RP23-197K16 from chromosome 12, complete sequence Length = 211170 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 acatttatttatgttacattt 121 ||||||||||||||||||||| Sbjct: 107828 acatttatttatgttacattt 107848
>ref|XM_452388.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C04279g predicted mRNA Length = 2655 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 105 ttatttatgttacattttact 125 ||||||||||||||||||||| Sbjct: 138 ttatttatgttacattttact 158
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 atccgccatcgcaaagaactc 276 ||||||||||||||||||||| Sbjct: 2852163 atccgccatcgcaaagaactc 2852183
>gb|AC124499.3| Mus musculus BAC clone RP24-68G23 from chromosome 12, complete sequence Length = 209276 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 acatttatttatgttacattt 121 ||||||||||||||||||||| Sbjct: 64303 acatttatttatgttacattt 64283
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 atccgccatcgcaaagaactc 276 ||||||||||||||||||||| Sbjct: 3580632 atccgccatcgcaaagaactc 3580652
>ref|XM_789881.1| PREDICTED: Strongylocentrotus purpuratus similar to AF-10 protein (LOC590272), mRNA Length = 3301 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 483 ttgtccttgcgatcctcctca 503 ||||||||||||||||||||| Sbjct: 1566 ttgtccttgcgatcctcctca 1546
>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1753957 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 105 ttatttatgttacattttact 125 ||||||||||||||||||||| Sbjct: 392305 ttatttatgttacattttact 392325
>gb|AC113170.2| Homo sapiens chromosome 3 clone RP11-604J9, complete sequence Length = 182020 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 gtgatacagaaacatttattt 110 ||||||||||||||||||||| Sbjct: 34882 gtgatacagaaacatttattt 34902
>gb|AC132515.6| Homo sapiens 3 BAC RP11-692F18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 79564 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 gtgatacagaaacatttattt 110 ||||||||||||||||||||| Sbjct: 28543 gtgatacagaaacatttattt 28523
>dbj|BS000220.1| Pan troglodytes chromosome 22 clone:PTB-057K02, map 22, complete sequences Length = 150817 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 tgatgtcacaaagaacattgt 91 ||||||||||||||||||||| Sbjct: 93811 tgatgtcacaaagaacattgt 93831
>emb|BX004992.13| Zebrafish DNA sequence from clone CH211-120E13 in linkage group 16, complete sequence Length = 195432 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 219 agatcaaacatcaaacatcaa 239 ||||||||||||||||||||| Sbjct: 165471 agatcaaacatcaaacatcaa 165491
>emb|CR354430.16| Zebrafish DNA sequence from clone CH211-218P2 in linkage group 25, complete sequence Length = 197231 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 acatttatttatgttacattt 121 ||||||||||||||||||||| Sbjct: 52486 acatttatttatgttacattt 52466
>dbj|AP001700.1| Homo sapiens genomic DNA, chromosome 21q, section 44/105 Length = 340000 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 tgatgtcacaaagaacattgt 91 ||||||||||||||||||||| Sbjct: 119439 tgatgtcacaaagaacattgt 119459
>dbj|AP001608.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1919E1, APP-D21S292 region, complete sequence Length = 158485 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 tgatgtcacaaagaacattgt 91 ||||||||||||||||||||| Sbjct: 25196 tgatgtcacaaagaacattgt 25216
>gb|AC146382.4| Pan troglodytes BAC clone RP43-112E23 from 7, complete sequence Length = 181957 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 tttatttatgttacatttta 123 |||||||||||||||||||| Sbjct: 20493 tttatttatgttacatttta 20512
>gb|AC146370.3| Pan troglodytes BAC clone RP43-58J3 from 7, complete sequence Length = 80817 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 tttatttatgttacatttta 123 |||||||||||||||||||| Sbjct: 68674 tttatttatgttacatttta 68655
>emb|AL356010.9| Human DNA sequence from clone RP11-136B18 on chromosome 1 Contains a pseudogene similar to part of POM (POM121 homolog, rat) and ZP3 fusion (POMZP3), a novel gene and a CpG island, complete sequence Length = 151182 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 atttatttatgttacatttt 122 |||||||||||||||||||| Sbjct: 91086 atttatttatgttacatttt 91067
>emb|AL135932.7| Human DNA sequence from clone RP4-535H23 on chromosome 11p12-14.1 Contains STSs, complete sequence Length = 143321 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 aaacatttatttatgttaca 118 |||||||||||||||||||| Sbjct: 61459 aaacatttatttatgttaca 61478
>gb|AC008534.7| Homo sapiens chromosome 5 clone CTC-484P3, complete sequence Length = 253402 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 aacatttatttatgttacat 119 |||||||||||||||||||| Sbjct: 1725 aacatttatttatgttacat 1744
>gb|AC124854.2| Homo sapiens chromosome 5 clone RP11-133F8, complete sequence Length = 149205 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 acatttatttatgttacattttac 124 |||||||||||| ||||||||||| Sbjct: 10554 acatttatttattttacattttac 10531
>emb|CR927553.8| Zebrafish DNA sequence from clone DKEY-206P8 in linkage group 17, complete sequence Length = 162064 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 aacatttatttatgttacat 119 |||||||||||||||||||| Sbjct: 12393 aacatttatttatgttacat 12412
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 Length = 1779707 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 accatgacattcgcaagcga 160 |||||||||||||||||||| Sbjct: 1211947 accatgacattcgcaagcga 1211928
>emb|BX511223.6| Zebrafish DNA sequence from clone DKEYP-96B6 in linkage group 14, complete sequence Length = 190254 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 aaacatttatttatgttaca 118 |||||||||||||||||||| Sbjct: 24174 aaacatttatttatgttaca 24193
>gb|AC012312.9| Homo sapiens chromosome 5 clone CTC-558O19, complete sequence Length = 181226 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 aacatttatttatgttacat 119 |||||||||||||||||||| Sbjct: 104456 aacatttatttatgttacat 104437
>gb|AC026780.5| Homo sapiens chromosome 5 clone CTC-529L17, complete sequence Length = 170059 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 acatttatttatgttacattttac 124 |||||||||||| ||||||||||| Sbjct: 106220 acatttatttattttacattttac 106197
>dbj|AK086347.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930023D13 product:unclassifiable, full insert sequence Length = 3338 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 atcaaacatcaaacatcaac 240 |||||||||||||||||||| Sbjct: 54 atcaaacatcaaacatcaac 35
>gb|AC096667.1| Homo sapiens BAC clone RP11-363K21 from 2, complete sequence Length = 194508 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 attgtgatacagaaacattt 106 |||||||||||||||||||| Sbjct: 60320 attgtgatacagaaacattt 60339
>emb|AL954666.10| Zebrafish DNA sequence from clone CH211-81I19 in linkage group 24, complete sequence Length = 163872 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 gatgtcacaaagaacattgt 91 |||||||||||||||||||| Sbjct: 20829 gatgtcacaaagaacattgt 20810
>gb|AC004095.1|AC004095 Human Cosmid g1248a143 from 7q31.3, complete sequence Length = 38162 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 tttatttatgttacatttta 123 |||||||||||||||||||| Sbjct: 21463 tttatttatgttacatttta 21482
>emb|AL845268.2| Mouse DNA sequence from clone RP23-69A6 on chromosome X, complete sequence Length = 106589 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 atttatttatgttacatttt 122 |||||||||||||||||||| Sbjct: 962 atttatttatgttacatttt 981
>emb|AL669848.12| Mouse DNA sequence from clone RP23-209F17 on chromosome X, complete sequence Length = 114708 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 atttatttatgttacatttt 122 |||||||||||||||||||| Sbjct: 113670 atttatttatgttacatttt 113689 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,226,533 Number of Sequences: 3902068 Number of extensions: 4226533 Number of successful extensions: 87249 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87103 Number of HSP's gapped (non-prelim): 140 length of query: 607 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 584 effective length of database: 17,143,297,704 effective search space: 10011685859136 effective search space used: 10011685859136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)