ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31e22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1INX1_DROME (P27716) Innexin inx1 (Innexin-1) (Protein ogre) (Pro... 35 0.21
2MOL2A_MOUSE (Q8BSU7) Mps one binder kinase activator-like 2A (Mo... 30 6.8
3NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 p... 30 6.8
4NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4... 30 6.8
5S35D1_HUMAN (Q9NTN3) UDP-glucuronic acid/UDP-N-acetylgalactosami... 30 6.8

>INX1_DROME (P27716) Innexin inx1 (Innexin-1) (Protein ogre) (Protein optic|
           ganglion reduced)
          Length = 362

 Score = 35.0 bits (79), Expect = 0.21
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 654 AMSCFTTPFSWRNILGILIAVVGMGLYSYFCTRETQPKPTEA 529
           AM+C+T  F W    G L+ ++ MGL    CTRE +    +A
Sbjct: 120 AMACYTPKFLWNKFEGGLMRMIVMGLNITICTREEKEAKRDA 161



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>MOL2A_MOUSE (Q8BSU7) Mps one binder kinase activator-like 2A (Mob1 homolog 2A)|
          Length = 217

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 283 NYVYNTMNQGPKRRSCPRALGAPHGHLQRSEEQR-SCPCILGAP 411
           N +Y T++ G   +SCP   G P    +  +EQR   P  L AP
Sbjct: 73  NLIYGTISDGCTEQSCPVMSGGPKYEYRWQDEQRFRKPTALSAP 116



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>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -1

Query: 422  RSPCGAPSMHGHERCSSDL*RCPCGAPSARGHERRFGPW 306
            R+ CG P  H H   +S   R P  AP    H R  G W
Sbjct: 1211 RARCGCPRPHPHRPRASH--RAPAAAPHHHRHRRAAGGW 1247



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>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -1

Query: 422  RSPCGAPSMHGHERCSSDL*RCPCGAPSARGHERRFGPW 306
            R+ CG P  H H   +S   R P  AP    H R  G W
Sbjct: 1211 RARCGCPRPHPHRPRASH--RAPAAAPHHHRHRRAAGGW 1247



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>S35D1_HUMAN (Q9NTN3) UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter|
           (UDP-GlcA/UDP-GalNAc transporter) (Solute carrier family
           35 member D1) (UDP-galactose transporter-related protein
           7) (UGTrel7)
          Length = 355

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 630 FSWRNILGILIAVVGMGLYSYFC-TRETQPKPTEAS 526
           F+W N +G+ I++ G  +YSY   T E   K +EA+
Sbjct: 309 FTWTNFIGLNISIAGSLVYSYITFTEEQLSKQSEAN 344


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,428,355
Number of Sequences: 219361
Number of extensions: 1824939
Number of successful extensions: 4863
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4857
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6712189044
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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