ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31e20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TUSD_BUCAP (Q8K944) Sulfurtransferase tusD (EC 2.8.1.-) (tRNA 2-... 32 2.0
2AOX_YARLI (Q8J0I8) Alternative oxidase, mitochondrial precursor ... 30 4.5
3TDXH_METMP (Q6LY19) Probable peroxiredoxin (EC 1.11.1.15) 30 5.9
4VIT6_CAEEL (P18948) Vitellogenin 6 precursor 30 7.7

>TUSD_BUCAP (Q8K944) Sulfurtransferase tusD (EC 2.8.1.-) (tRNA 2-thiouridine|
           synthesizing protein D)
          Length = 128

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -1

Query: 413 FMSPTGTTFDALGLVKQINEQNAPXXXXXXXXXASRSLCNEENIKHIVIKKEHVTTNQTS 234
           F  P+   FD L   KQ+NE+N           + R +  +E I +  IK  +  +   S
Sbjct: 50  FNKPSVDEFDLLSAWKQLNEKNKVKLYVCVSAASRRGVIEDEKISNTKIKNGNFASFFQS 109

Query: 233 NGLSE 219
           +GL E
Sbjct: 110 SGLLE 114



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>AOX_YARLI (Q8J0I8) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)|
          Length = 353

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 198 VEIKNPCFGQAVGCLIGCNMFLLDNNMFYVFLIT*APTCQEFMGFLQSRSVL 353
           ++++ P      G LIG  +F    N+F++  +    TC  F+G+L+  +V+
Sbjct: 204 LKLQKPSVQMRTGLLIGQIIFY---NLFFISYLISPATCHRFVGYLEEEAVI 252



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>TDXH_METMP (Q6LY19) Probable peroxiredoxin (EC 1.11.1.15)|
          Length = 217

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -1

Query: 614 RKLNTPTKSFSKDIIFSRSKPTELLVEKSYADYEYVNILADTPG---IKRGLESP 459
           R+LNT     S D +FS  K  E + EK   D E+  I+AD  G   +K G+ SP
Sbjct: 61  RELNTELIGLSIDQVFSHIKWVEWIKEKLDVDIEF-PIIADDRGELAVKLGMISP 114



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>VIT6_CAEEL (P18948) Vitellogenin 6 precursor|
          Length = 1650

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 282  KTYCYQEGTCYNQSDIQRLVRSKDS*FQRVHHTCEEERRQEM 157
            K+Y Y++  C    + +R +  K+  FQR+    EEE+ QEM
Sbjct: 1505 KSYLYKDSKC----NYEREMFEKEENFQRIEKNQEEEKDQEM 1542


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,875,756
Number of Sequences: 219361
Number of extensions: 1881830
Number of successful extensions: 3974
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3974
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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