Clone Information

BLAST Search Result

Clone Name	rbags30p13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3	258	8e-69
2	PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)	112	7e-25
3	PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB) ...	112	1e-24
4	PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB...	109	6e-24
5	PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB) ...	106	7e-23
6	ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)	103	3e-22
7	ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)	103	6e-22
8	ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)	102	1e-21
9	PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neura...	101	2e-21
10	PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Bra...	101	2e-21
11	PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neu...	101	2e-21
12	PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB...	88	2e-17
13	HNRPL_HUMAN (P14866) Heterogeneous nuclear ribonucleoprotein L (...	82	1e-15
14	HNRPL_MOUSE (Q8R081) Heterogeneous nuclear ribonucleoprotein L (...	79	9e-15
15	HNRLL_HUMAN (Q8WVV9) Heterogeneous nuclear ribonucleoprotein L-l...	76	1e-13
16	HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like	73	7e-13
17	PTBP2_ARATH (Q9FGL9) Polypyrimidine tract-binding protein homolog 2	46	9e-05
18	PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-bi...	44	3e-04
19	PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-bi...	44	3e-04
20	PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-bi...	44	3e-04
21	PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-bi...	44	3e-04
22	PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-bi...	44	3e-04
23	PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-bi...	44	3e-04
24	MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog) (SMA...	44	3e-04
25	MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog) (SMA...	43	0.001
26	PTBP1_ARATH (Q9MAC5) Polypyrimidine tract-binding protein homolog 1	41	0.003
27	NUCL_XENLA (P20397) Nucleolin (Protein C23)	40	0.006
28	ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (...	39	0.011
29	RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch...	39	0.014
30	PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bi...	39	0.014
31	PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g...	37	0.052
32	ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur...	37	0.068
33	RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1	36	0.089
34	EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Emb...	36	0.089
35	EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (...	35	0.15
36	NUCL_CHICK (P15771) Nucleolin (Protein C23)	35	0.15
37	TNR6A_HUMAN (Q8NDV7) Trinucleotide repeat-containing gene 6A pro...	35	0.26
38	NSR1_YEAST (P27476) Nuclear localization sequence-binding protei...	35	0.26
39	EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (...	34	0.34
40	RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41	34	0.34
41	ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro...	34	0.34
42	RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40	34	0.44
43	S17P_SPIOL (O20252) Sedoheptulose-1,7-bisphosphatase, chloroplas...	34	0.44
44	ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec...	33	0.76
45	NUCL_MESAU (P08199) Nucleolin (Protein C23)	33	0.99
46	RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-ri...	33	0.99
47	ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precur...	32	1.3
48	ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor	32	1.3
49	SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a...	32	1.7
50	PDXJ_PORGI (Q51843) Pyridoxal phosphate biosynthetic protein pdx...	32	2.2
51	ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1	32	2.2
52	NUCL_RAT (P13383) Nucleolin (Protein C23)	32	2.2
53	RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protei...	32	2.2
54	TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10 (Tran...	31	3.7
55	TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10 (Tr...	31	3.7
56	TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10 (Tr...	31	3.7
57	ILL1_ARATH (P54969) IAA-amino acid hydrolase ILR1-like 1 precurs...	30	4.9
58	YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4 ...	30	4.9
59	NUCL_MOUSE (P09405) Nucleolin (Protein C23)	30	4.9
60	DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111...	30	4.9
61	ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur...	30	6.4
62	YKV4_YEAST (P36036) Hypothetical 23.8 kDa protein in URA1-DOA1 i...	30	6.4
63	NUCL_PONPY (Q5RF26) Nucleolin	30	6.4
64	SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attach...	30	6.4
65	RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2	30	6.4
66	NUCL_MACFA (Q4R4J7) Nucleolin	30	6.4
67	NUCL_HUMAN (P19338) Nucleolin (Protein C23)	30	6.4
68	YJ9G_YEAST (P47170) Hypothetical 182.0 kDa protein in NMD5-HOM6 ...	30	6.4
69	DNE21_RHIME (Q92LA6) Error-prone DNA polymerase 1 (EC 2.7.7.7)	30	8.3
70	CKAP5_HUMAN (Q14008) Cytoskeleton-associated protein 5 (Colonic ...	30	8.3

>PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3|
          Length = 432

 Score =  258 bits (660), Expect = 8e-69
 Identities = 119/172 (69%), Positives = 146/172 (84%)
 Frame = -3

Query: 659 KLFNLFSIYGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYP 480
           KLFNLFS+YGNIVRIK+LRN PDHALVQM DG Q ELA+H+LKGAML G++LEVNFSK+P
Sbjct: 261 KLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHP 320

Query: 479 SITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGT 300
           +ITP  D+HDY  SNLNRFN N AKNYR+CC+PTK+IH+S L  +++E+ ++ H+ EHG 
Sbjct: 321 NITPGTDSHDYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGA 380

Query: 299 IVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGSTIRISFSQMQNI 144
           +V +K+FE +GK QALVQFE+EEEA EALVCKHA+ L GS IRISFSQ+Q I
Sbjct: 381 VVNTKVFEMNGKKQALVQFENEEEAAEALVCKHATSLGGSIIRISFSQLQTI 432



 Score = 36.2 bits (82), Expect = 0.089
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = -3

Query: 380 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEAL--VC 207
           +K++H+  +  EISE+ +++     G I K  +  A  K QAL+Q +    A  AL    
Sbjct: 5   SKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRA--KNQALLQMQDVSSAVSALQFFT 62

Query: 206 KHASKLEGSTIRISFSQMQNI 144
                + G  + + FS  Q +
Sbjct: 63  NVQPTIRGRNVYVQFSSHQEL 83

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>PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)|
          Length = 531

 Score =  112 bits (281), Expect = 7e-25
 Identities = 67/175 (38%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPS 477
           LF LF +YG++ R+KVL N  ++ALVQMADG Q +LA+ +L G  L G+ + +  SK+ S
Sbjct: 354 LFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQS 413

Query: 476 ITPAPDAH-------DYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEH 318
           +    +         DY  S L+RF    +KN+++   P+  +H+S + P ISED +   
Sbjct: 414 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEDDLKIL 473

Query: 317 LSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 156
            S +G IVK   F    +  AL+Q  S EEA +AL+  H   L E   +R+SFS+
Sbjct: 474 FSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 528



 Score = 32.0 bits (71), Expect = 1.7
 Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 45/216 (20%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVL-RNXPDHALVQMADGLQTELAIHYLKGAMLLGQ--KLEVNFSK 486
           L  +FS +G +++I    +N    AL+Q AD +  + A   L G  +      L ++FSK
Sbjct: 200 LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 259

Query: 485 YPSITPAPD---AHDYSTSNLNRFNSNVA-------------KNYRHCCAP--------- 381
             S+    +   + DY+  +L   +S  +              N     AP         
Sbjct: 260 LTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAA 319

Query: 380 ----------------TKIIHISALSPE-ISEDAIIEHLSEHGTIVKSKLFEASGKTQAL 252
                             ++ +S L+PE ++  ++      +G + + K+   + K  AL
Sbjct: 320 AAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKVL-FNKKENAL 378

Query: 251 VQFESEEEATEALVCKHASKLEGSTIRISFSQMQNI 144
           VQ     +A  A+   +  KL G  +RI+ S+ Q++
Sbjct: 379 VQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQSV 414



 Score = 31.6 bits (70), Expect = 2.2
 Identities = 35/183 (19%), Positives = 75/183 (40%), Gaps = 19/183 (10%)
 Frame = -3

Query: 635 YGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGA--MLLGQKLEVNFSKYPSI-TPA 465
           +G +  + +L+   + A ++M         ++Y      +L GQ + + FS +  + T +
Sbjct: 82  FGKVTNLLMLKGK-NQAFIEMHTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140

Query: 464 PDAHDYSTSNLNRFNSNVAKNYRHCCA--------------PTKIIHISALSPEISEDAI 327
                 + + L   NS  + N     +              P   I +  L   ++ D +
Sbjct: 141 SPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVL 200

Query: 326 IEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGS--TIRISFSQM 153
            +  S+ GT++K   F  + + QAL+Q+     A  A +      +  +  T+RI FS++
Sbjct: 201 HQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 260

Query: 152 QNI 144
            ++
Sbjct: 261 TSL 263

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>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
           (Pyrimidine-binding protein) (PYBP)
          Length = 555

 Score =  112 bits (280), Expect = 1e-24
 Identities = 63/175 (36%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPS 477
           LF LF +YG++ R+K+L N  ++ALV+MADG Q +LA+ +L G  L G+ + +  SK+ S
Sbjct: 378 LFILFGVYGDVQRVKILFNKKENALVEMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQS 437

Query: 476 ITPAPDAH-------DYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEH 318
           +    +         DY +S L+RF    +KN+++   P+  +H+S + P +SED +   
Sbjct: 438 VQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSL 497

Query: 317 LSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 156
            S +G +VK   F    +  AL+Q  S EEA +AL+  H   L E   +R+SFS+
Sbjct: 498 FSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 552



 Score = 32.7 bits (73), Expect = 0.99
 Identities = 35/183 (19%), Positives = 76/183 (41%), Gaps = 19/183 (10%)
 Frame = -3

Query: 635 YGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGA--MLLGQKLEVNFSKYPSI-TPA 465
           +G +  + +L+   + A ++M+        ++Y      +L GQ + + FS +  + T +
Sbjct: 81  FGKVTNLLMLKGK-NQAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139

Query: 464 PDAHDYSTSNLNRFNSNVAKNYRHCCA--------------PTKIIHISALSPEISEDAI 327
                 + + L   NS  + N     +              P   I +  L   ++ D +
Sbjct: 140 SPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVL 199

Query: 326 IEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGS--TIRISFSQM 153
            +  S+ GT++K   F  + + QAL+Q+     A  A +      +  +  T+RI FS++
Sbjct: 200 HQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 259

Query: 152 QNI 144
            ++
Sbjct: 260 TSL 262



 Score = 31.2 bits (69), Expect = 2.9
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = -3

Query: 386 APTKIIHISALSPE-ISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALV 210
           A   ++ +S L+PE ++  ++      +G + + K+   + K  ALV+     +A  A+ 
Sbjct: 358 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL-FNKKENALVEMADGSQAQLAMS 416

Query: 209 CKHASKLEGSTIRISFSQMQNI 144
             +  KL G ++RI+ S+ Q++
Sbjct: 417 HLNGHKLHGKSVRITLSKHQSV 438

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>PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
           (57 kDa RNA-binding protein PPTB-1)
          Length = 531

 Score =  109 bits (273), Expect = 6e-24
 Identities = 62/175 (35%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPS 477
           LF LF +YG++ R+K+L N  ++ALVQMADG Q +LA+ +L G  L G+ + +  SK+ +
Sbjct: 354 LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 413

Query: 476 ITPAPDAH-------DYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEH 318
           +    +         DY  S L+RF    +KN+++   P+  +H+S + P +SE+ +   
Sbjct: 414 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVL 473

Query: 317 LSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 156
            S +G +VK   F    +  AL+Q  S EEA +AL+  H   L E   +R+SFS+
Sbjct: 474 FSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 528



 Score = 34.7 bits (78), Expect = 0.26
 Identities = 48/216 (22%), Positives = 86/216 (39%), Gaps = 45/216 (20%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVL-RNXPDHALVQMADGLQTELAIHYLKGAMLLGQ--KLEVNFSK 486
           L  +FS +G +++I    +N    AL+Q AD +  + A   L G  +      L ++FSK
Sbjct: 200 LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 259

Query: 485 YPSITPAPD---AHDYSTSNLNRFNSNVA-------------KNYRHCCAP--------- 381
             S+    +   + DY+  +L   +S  +              N     AP         
Sbjct: 260 LTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAA 319

Query: 380 ----------------TKIIHISALSPE-ISEDAIIEHLSEHGTIVKSKLFEASGKTQAL 252
                             ++ +S L+PE ++  ++      +G + + K+   + K  AL
Sbjct: 320 AAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL-FNKKENAL 378

Query: 251 VQFESEEEATEALVCKHASKLEGSTIRISFSQMQNI 144
           VQ     +A  A+   +  KL G  IRI+ S+ QN+
Sbjct: 379 VQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 414



 Score = 31.6 bits (70), Expect = 2.2
 Identities = 35/183 (19%), Positives = 75/183 (40%), Gaps = 19/183 (10%)
 Frame = -3

Query: 635 YGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGA--MLLGQKLEVNFSKYPSI-TPA 465
           +G +  + +L+   + A ++M         ++Y      +L GQ + + FS +  + T +
Sbjct: 82  FGKVTNLLMLKGK-NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140

Query: 464 PDAHDYSTSNLNRFNSNVAKNYRHCCA--------------PTKIIHISALSPEISEDAI 327
                 + + L   NS  + N     +              P   I +  L   ++ D +
Sbjct: 141 SPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVL 200

Query: 326 IEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGS--TIRISFSQM 153
            +  S+ GT++K   F  + + QAL+Q+     A  A +      +  +  T+RI FS++
Sbjct: 201 HQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 260

Query: 152 QNI 144
            ++
Sbjct: 261 TSL 263

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>PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
          Length = 557

 Score =  106 bits (264), Expect = 7e-23
 Identities = 63/175 (36%), Positives = 99/175 (56%), Gaps = 8/175 (4%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPS 477
           LF LF +Y ++ R+K+L N  ++ALVQMADG Q +LA+ +L G  L G+ + +  SK+ +
Sbjct: 380 LFILFGVYCDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQN 439

Query: 476 ITPAPDAH-------DYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEH 318
           +    +         DY  S L+RF    +KN+++   P+  +H+S + P ISE+ +   
Sbjct: 440 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEEDLKIL 499

Query: 317 LSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 156
            S +G IVK   F    +  AL+Q  S EEA +AL+  H   L E   +R+SFS+
Sbjct: 500 FSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 554



 Score = 31.6 bits (70), Expect = 2.2
 Identities = 35/183 (19%), Positives = 75/183 (40%), Gaps = 19/183 (10%)
 Frame = -3

Query: 635 YGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGA--MLLGQKLEVNFSKYPSI-TPA 465
           +G +  + +L+   + A ++M         ++Y      +L GQ + + FS +  + T +
Sbjct: 82  FGKVTNLLMLKGK-NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140

Query: 464 PDAHDYSTSNLNRFNSNVAKNYRHCCA--------------PTKIIHISALSPEISEDAI 327
                 + + L   NS  + N     +              P   I +  L   ++ D +
Sbjct: 141 SPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVL 200

Query: 326 IEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGS--TIRISFSQM 153
            +  S+ GT++K   F  + + QAL+Q+     A  A +      +  +  T+RI FS++
Sbjct: 201 HQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 260

Query: 152 QNI 144
            ++
Sbjct: 261 TSL 263



 Score = 30.0 bits (66), Expect = 6.4
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = -3

Query: 386 APTKIIHISALSPE-ISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALV 210
           A   ++ +S L+PE ++  ++      +  + + K+   + K  ALVQ     +A  A+ 
Sbjct: 360 AGNSVLLVSNLNPERVTPQSLFILFGVYCDVQRVKIL-FNKKENALVQMADGSQAQLAMS 418

Query: 209 CKHASKLEGSTIRISFSQMQNI 144
             +  KL G  +RI+ S+ QN+
Sbjct: 419 HLNGHKLHGKPVRITLSKHQNV 440

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>ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)|
          Length = 523

 Score =  103 bits (258), Expect = 3e-22
 Identities = 60/175 (34%), Positives = 99/175 (56%), Gaps = 8/175 (4%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPS 477
           LF LF +YG++ R+K++ N  ++ALVQMAD  Q +LA+++L G  L G+ L    SK+ +
Sbjct: 346 LFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSKHQA 405

Query: 476 ITPAPDAH-------DYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEH 318
           +    +         D+S S L+RF    +KN+++   P+  +H+S + P ++ D +   
Sbjct: 406 VQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNL 465

Query: 317 LSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 156
            +E G  VK+  F    +  AL+Q  S EEA +AL+  H   L E   +R+SFS+
Sbjct: 466 FTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 520



 Score = 33.1 bits (74), Expect = 0.76
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = -3

Query: 407 KNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEE 228
           K  R  C+P++++H+  +  +++E  +I      G +  + L    GK+QA ++  SEE 
Sbjct: 20  KGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKV--TNLLMLKGKSQAFLEMASEEA 77

Query: 227 A 225
           A
Sbjct: 78  A 78



 Score = 29.6 bits (65), Expect = 8.3
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = -3

Query: 386 APTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVC 207
           +P   I I  L   ++ + + +  S+ GT++K   F  + + QAL+Q+     A  A + 
Sbjct: 150 SPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMA 209

Query: 206 KHASKLEGS--TIRISFSQMQNI 144
                +  +  T+RI FS++ ++
Sbjct: 210 LDGQNIYNACCTLRIDFSKLTSL 232

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>ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)|
          Length = 523

 Score =  103 bits (256), Expect = 6e-22
 Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 8/175 (4%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPS 477
           LF LF +YG++ R+K++ N  ++ALVQMAD  Q ++A+++L G  L G+ L    SK+ +
Sbjct: 346 LFILFGVYGDVHRVKIMFNKKENALVQMADASQAQIAMNHLSGQRLYGKVLRATLSKHQA 405

Query: 476 ITPAPDAH-------DYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEH 318
           +    +         D+S S L+RF    +KN+++   P+  +H+S + P ++ D +   
Sbjct: 406 VQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNL 465

Query: 317 LSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 156
            +E G  VK+  F    +  AL+Q  S EEA +AL+  H   L E   +R+SFS+
Sbjct: 466 FTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 520



 Score = 33.1 bits (74), Expect = 0.76
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = -3

Query: 407 KNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEE 228
           K  R  C+P++++H+  +  +++E  +I      G +  + L    GK+QA ++  SEE 
Sbjct: 20  KGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKV--TNLLMLKGKSQAFLEMASEEA 77

Query: 227 A 225
           A
Sbjct: 78  A 78



 Score = 29.6 bits (65), Expect = 8.3
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = -3

Query: 386 APTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVC 207
           +P   I I  L   ++ + + +  S+ GT++K   F  + + QAL+Q+     A  A + 
Sbjct: 150 SPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMA 209

Query: 206 KHASKLEGS--TIRISFSQMQNI 144
                +  +  T+RI FS++ ++
Sbjct: 210 LDGQNIYNACCTLRIDFSKLTSL 232

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>ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)|
          Length = 521

 Score =  102 bits (254), Expect = 1e-21
 Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 8/175 (4%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPS 477
           LF LF +YG++ R+K++ N  ++ALVQMAD  Q +LA+++L G  L G+ L    SK+ +
Sbjct: 344 LFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQA 403

Query: 476 ITPAPDAH-------DYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEH 318
           +    +         D+S S L+RF    +KN+++   P+  +H+S + P ++ D +   
Sbjct: 404 VQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNL 463

Query: 317 LSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 156
             E G  VK+  F    +  AL+Q  S EEA +AL+  H   L E   +R+SFS+
Sbjct: 464 FIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 518



 Score = 35.8 bits (81), Expect = 0.12
 Identities = 23/74 (31%), Positives = 40/74 (54%)
 Frame = -3

Query: 446 STSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASG 267
           ST+N N  +S   K  R  C+P++++H+  +  +++E  II      G +  + L    G
Sbjct: 7   STANGN--DSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKV--TNLLMLKG 62

Query: 266 KTQALVQFESEEEA 225
           K+QA ++  SEE A
Sbjct: 63  KSQAFLEMASEEAA 76

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>PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neural|
           polypyrimidine tract-binding protein) (PTB-like protein)
          Length = 531

 Score =  101 bits (251), Expect = 2e-21
 Identities = 59/175 (33%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPS 477
           LF LF +YG++ R+K+L N  D AL+QMADG Q++LA+++L G  + G+ + V  SK+ +
Sbjct: 355 LFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQT 414

Query: 476 ITPAPD-------AHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEH 318
           +    +         D+  S L+RF    +KN+++   P+  +H+S + P ++E+ +   
Sbjct: 415 VQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTL 474

Query: 317 LSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 156
            +  G  VK+  F    K  AL+Q  + EEA +AL+  H   L E   +R+SFS+
Sbjct: 475 FANTGGTVKAFKFFQDHK-MALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528



 Score = 31.6 bits (70), Expect = 2.2
 Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
 Frame = -3

Query: 569 DGLQTELAIHYLKGA--MLLGQKLEVNFSKYPSITPAPDAHDYSTSNLNRFNSNVAKNYR 396
           DG+ TE+A+   +G+  +L G  L    S    +    + +D       +F      +  
Sbjct: 2   DGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSGMVVTANGNDSK-----KFKGEDKMDG- 55

Query: 395 HCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEA 225
              AP++++HI  L  E++E  +I      G +  + +    GK QA ++  +EE A
Sbjct: 56  ---APSRVLHIRKLPGEVTETEVIALGLPFGKV--TNILMLKGKNQAFLELATEEAA 107

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>PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Brain-enriched|
           polypyrimidine tract-binding protein) (Brain-enriched
           PTB) (RRM-type RNA-binding protein brPTB) (Neural
           polypyrimidine tract-binding protein)
          Length = 531

 Score =  101 bits (251), Expect = 2e-21
 Identities = 59/175 (33%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPS 477
           LF LF +YG++ R+K+L N  D AL+QMADG Q++LA+++L G  + G+ + V  SK+ +
Sbjct: 355 LFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQT 414

Query: 476 ITPAPD-------AHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEH 318
           +    +         D+  S L+RF    +KN+++   P+  +H+S + P ++E+ +   
Sbjct: 415 VQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTL 474

Query: 317 LSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 156
            +  G  VK+  F    K  AL+Q  + EEA +AL+  H   L E   +R+SFS+
Sbjct: 475 FANTGGTVKAFKFFQDHK-MALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528



 Score = 31.6 bits (70), Expect = 2.2
 Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
 Frame = -3

Query: 569 DGLQTELAIHYLKGA--MLLGQKLEVNFSKYPSITPAPDAHDYSTSNLNRFNSNVAKNYR 396
           DG+ TE+A+   +G+  +L G  L    S    +    + +D       +F      +  
Sbjct: 2   DGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSGMVVTANGNDSK-----KFKGEDKMDG- 55

Query: 395 HCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEA 225
              AP++++HI  L  E++E  +I      G +  + +    GK QA ++  +EE A
Sbjct: 56  ---APSRVLHIRKLPGEVTETEVIALGLPFGKV--TNILMLKGKNQAFLELATEEAA 107

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>PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neurally-enriched|
           homolog of PTB) (Neural polypyrimidine tract-binding
           protein) (PTB-like protein)
          Length = 531

 Score =  101 bits (251), Expect = 2e-21
 Identities = 59/175 (33%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPS 477
           LF LF +YG++ R+K+L N  D AL+QMADG Q++LA+++L G  + G+ + V  SK+ +
Sbjct: 355 LFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQT 414

Query: 476 ITPAPD-------AHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEH 318
           +    +         D+  S L+RF    +KN+++   P+  +H+S + P ++E+ +   
Sbjct: 415 VQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTL 474

Query: 317 LSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 156
            +  G  VK+  F    K  AL+Q  + EEA +AL+  H   L E   +R+SFS+
Sbjct: 475 FANTGGTVKAFKFFQDHK-MALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528



 Score = 33.1 bits (74), Expect = 0.76
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
 Frame = -3

Query: 569 DGLQTELAIHYLKGA--MLLGQKLEVNFSKYPSITPAPDAHDYSTSNLNRFNSNVAKNYR 396
           DG+ TE+A+   +G+  +L G  L    S   S+    + +D       +F      +  
Sbjct: 2   DGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSK-----KFKGEDKMDG- 55

Query: 395 HCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEA 225
              AP++++HI  L  E++E  +I      G +  + +    GK QA ++  +EE A
Sbjct: 56  ---APSRVLHIRKLPGEVTETEVIALGLPFGKV--TNILMLKGKNQAFLELATEEAA 107

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>PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
          Length = 527

 Score = 88.2 bits (217), Expect = 2e-17
 Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 7/174 (4%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVLRNXPDHALVQMADGLQTELAI--HYLKGAMLLGQKLEVNFSKY 483
           LF LF +YG++ R+K+L N  ++ALVQMADG Q +L       + A  +     V  S+ 
Sbjct: 352 LFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLGEPPERAQAAREVSAHYTVQASEC 411

Query: 482 PSITPAPD----AHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHL 315
            +     +      DY +S L RF    +KN+++   P+  +H+S + P +SED +    
Sbjct: 412 AAAREGQEDQGLTKDYGSSPL-RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLF 470

Query: 314 SEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 156
           S +G +VK   F    +  AL+Q  S EEA +AL+  H   L E   +R+SFS+
Sbjct: 471 SSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 524



 Score = 31.2 bits (69), Expect = 2.9
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = -3

Query: 386 APTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVC 207
           +P   I +  L   ++ D + +  S+ GT++K   F  + + QAL+Q+     A  A + 
Sbjct: 180 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 239

Query: 206 KHASKLEGS--TIRISFSQMQNI 144
                +  +  T+RI FS++ ++
Sbjct: 240 LDGQNIYNACCTLRIDFSKLTSL 262

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>HNRPL_HUMAN (P14866) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)|
          Length = 558

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 13/162 (8%)
 Frame = -3

Query: 659 KLFNLFSIYGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYP 480
           ++FN+F +YGN+ ++K +++ P  A+V+MADG   + AI +L    + GQKL V  SK P
Sbjct: 367 RVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQP 426

Query: 479 SITPAP---------DAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAI 327
           +I P              D+S S  NRF++           P+ ++H      E++E+  
Sbjct: 427 AIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENF 486

Query: 326 IEHLSEHGTIVKSKLFEASGKTQ----ALVQFESEEEATEAL 213
            E   E G    S +   SGK++     L+++ES+ +A E L
Sbjct: 487 FEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 528

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>HNRPL_MOUSE (Q8R081) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)|
          Length = 555

 Score = 79.3 bits (194), Expect = 9e-15
 Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 13/162 (8%)
 Frame = -3

Query: 659 KLFNLFSIYGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYP 480
           ++FN+F +YGN+ ++K +++ P  A+V+MADG   + AI +L    + GQK+ V  SK P
Sbjct: 364 RVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 423

Query: 479 SITPAP---------DAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAI 327
           +I P              D+S S  NRF++           P+ ++H      E++E+  
Sbjct: 424 AIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENF 483

Query: 326 IEHLSEHGTIVKSKLFEASGKTQ----ALVQFESEEEATEAL 213
            E   E G    + +   SGK++     L++++S+ +A E L
Sbjct: 484 FEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETL 525

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>HNRLL_HUMAN (Q8WVV9) Heterogeneous nuclear ribonucleoprotein L-like (Stromal|
           RNA-regulating factor) (BLOCK24 protein)
          Length = 542

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 20/192 (10%)
 Frame = -3

Query: 659 KLFNLFSIYGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYP 480
           ++FNLF +YGNI ++K ++  P  ALV+M D    E A+ +L    L G++L V  SK  
Sbjct: 351 RVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQH 410

Query: 479 SITPA---------PDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAI 327
           S+ P+             D++ S  NRF S    +      P+ ++H   +   ++E+  
Sbjct: 411 SVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETF 470

Query: 326 IEHLSEHG--TIVKSKLFEA--SGKT-QALVQFESEEEATEALVCKHASKL---EGS--- 180
            +  ++H   T +K K+F+A  S KT   L+++E + +A EAL   +  ++    GS   
Sbjct: 471 TKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPY 530

Query: 179 TIRISFSQMQNI 144
           T+++ FS   ++
Sbjct: 531 TLKLCFSTSSHL 542



 Score = 33.9 bits (76), Expect = 0.44
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -3

Query: 425 FNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQ 246
           F+   A    H  + + ++H+  L   + E  ++E L + GTI    +     K QALV+
Sbjct: 60  FSQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVE 117

Query: 245 FESEEEATEAL 213
           FE+ + A E +
Sbjct: 118 FENIDSAKECV 128

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>HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like|
          Length = 591

 Score = 73.2 bits (178), Expect = 7e-13
 Identities = 53/192 (27%), Positives = 98/192 (51%), Gaps = 20/192 (10%)
 Frame = -3

Query: 659 KLFNLFSIYGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYP 480
           ++FNLF +YGNI ++K ++  P  ALV+M D    E A+ +L    L G++L V  SK  
Sbjct: 400 RVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQH 459

Query: 479 SITPA---------PDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAI 327
           S+ P+             D++ S  NRF S    +      P+ ++H   +   ++E+  
Sbjct: 460 SVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETF 519

Query: 326 IEHLSEHGTI--VKSKLFE--ASGKT-QALVQFESEEEATEALVCKHASKL---EGS--- 180
            +  ++H  +  +K K+F+  AS KT   L++++ + +A EAL   +  ++    GS   
Sbjct: 520 TKLCNDHEVLPFIKYKVFDAKASAKTLSGLLEWKCKTDAVEALTALNHYQIRVPNGSNPY 579

Query: 179 TIRISFSQMQNI 144
           T+++ FS   ++
Sbjct: 580 TLKLCFSTSSHL 591



 Score = 32.7 bits (73), Expect = 0.99
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = -3

Query: 395 HCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEA 216
           H  + + ++H+  L   + E  ++E L + GTI    +     K QALV+FE+ + A E 
Sbjct: 119 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKEC 176

Query: 215 L 213
           +
Sbjct: 177 V 177

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>PTBP2_ARATH (Q9FGL9) Polypyrimidine tract-binding protein homolog 2|
          Length = 429

 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
 Frame = -3

Query: 401 YRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEAT 222
           +R+   P+K++H+  L  E +E+ +IE     GT+V +K    + + QA ++FE   +A 
Sbjct: 10  FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAI 69

Query: 221 EALVCKHASKLE-----GSTIRISFSQMQNI 144
           + ++  +AS  E     G T+ + +S  Q I
Sbjct: 70  Q-MISYYASSSEPAQVRGKTVYLQYSNRQEI 99

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>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 6/173 (3%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVL---RNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSK 486
           LF LFS +GNI+  KV+        +A V          AI ++ G  L  +++ V   K
Sbjct: 122 LFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFK 181

Query: 485 YPSITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEH 306
           +P       A +  T +   F +   KN               +  +I ++ + E   E+
Sbjct: 182 FPE----ERAAEVRTRDRATFTNVFVKN---------------IGDDIDDEKLKELFCEY 222

Query: 305 GTIVKSKLF-EASGKTQ--ALVQFESEEEATEALVCKHASKLEGSTIRISFSQ 156
           G     K+  +ASGK++    V++E+ E A +A++  H   ++G  + +  +Q
Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 275

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>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 6/173 (3%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVL---RNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSK 486
           LF LFS +GNI+  KV+        +A V          AI ++ G  L  +++ V   K
Sbjct: 122 LFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFK 181

Query: 485 YPSITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEH 306
           +P       A +  T +   F +   KN               +  +I ++ + E   E+
Sbjct: 182 FPE----ERAAEVRTRDRATFTNVFVKN---------------IGDDIDDEKLKELFCEY 222

Query: 305 GTIVKSKLF-EASGKTQ--ALVQFESEEEATEALVCKHASKLEGSTIRISFSQ 156
           G     K+  +ASGK++    V++E+ E A +A++  H   ++G  + +  +Q
Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 275

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>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 6/173 (3%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVL---RNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSK 486
           LF LFS +GNI+  KV+        +A V          AI ++ G  L  +++ V   K
Sbjct: 122 LFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFK 181

Query: 485 YPSITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEH 306
           +P       A +  T +   F +   KN               +  +I ++ + E   E+
Sbjct: 182 FPE----ERAAEVRTRDRATFTNVFVKN---------------IGDDIDDEKLKELFCEY 222

Query: 305 GTIVKSKLF-EASGKTQ--ALVQFESEEEATEALVCKHASKLEGSTIRISFSQ 156
           G     K+  +ASGK++    V++E+ E A +A++  H   ++G  + +  +Q
Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 275

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>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 6/173 (3%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVL---RNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSK 486
           LF LFS +GNI+  KV+        +A V          AI ++ G  L  +++ V   K
Sbjct: 122 LFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFK 181

Query: 485 YPSITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEH 306
           +P       A +  T +   F +   KN               +  +I ++ + E   E+
Sbjct: 182 FPE----ERAAEVRTRDRATFTNVFVKN---------------IGDDIDDEKLKELFCEY 222

Query: 305 GTIVKSKLF-EASGKTQ--ALVQFESEEEATEALVCKHASKLEGSTIRISFSQ 156
           G     K+  +ASGK++    V++E+ E A +A++  H   ++G  + +  +Q
Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 275

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>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 6/173 (3%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVL---RNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSK 486
           LF LFS +GNI+  KV+        +A V          AI ++ G  L  +++ V   K
Sbjct: 122 LFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFK 181

Query: 485 YPSITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEH 306
           +P       A +  T +   F +   KN               +  +I ++ + E   E+
Sbjct: 182 FPE----ERAAEVRTRDRATFTNVFVKN---------------IGDDIDDEKLKELFCEY 222

Query: 305 GTIVKSKLF-EASGKTQ--ALVQFESEEEATEALVCKHASKLEGSTIRISFSQ 156
           G     K+  +ASGK++    V++E+ E A +A++  H   ++G  + +  +Q
Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 275

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>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 6/173 (3%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVL---RNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSK 486
           LF LFS +GNI+  KV+        +A V          AI ++ G  L  +++ V   K
Sbjct: 122 LFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFK 181

Query: 485 YPSITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEH 306
           +P       A +  T +   F +   KN               +  +I ++ + E   E+
Sbjct: 182 FPE----ERAAEVRTRDRATFTNVFVKN---------------IGDDIDDEKLKELFCEY 222

Query: 305 GTIVKSKLF-EASGKTQ--ALVQFESEEEATEALVCKHASKLEGSTIRISFSQ 156
           G     K+  +ASGK++    V++E+ E A +A++  H   ++G  + +  +Q
Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 275

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>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3644

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 2/177 (1%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRI--KVLRNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKY 483
           L N+F  +G IV I  K +   P +A +Q  D      AI  + G  L   +L++ F K 
Sbjct: 455 LRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGEYLGNNRLKLGFGK- 513

Query: 482 PSITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHG 303
                                            PT  + +  LS  +S+  +  H   +G
Sbjct: 514 -------------------------------SMPTNCVWLDGLSSNVSDQYLTRHFCRYG 542

Query: 302 TIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGSTIRISFSQMQNI*QFF 132
            +VK       G   ALV +   E+A  A+      K+ G+ I++ F+  ++   F+
Sbjct: 543 PVVKVVFDRLKG--MALVLYSEIEDAQAAVKETKGRKIGGNKIKVDFANRESQLAFY 597

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>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3664

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 2/177 (1%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRI--KVLRNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKY 483
           L N+F  +G IV I  K +   P +A +Q  D      AI  + G  L   +L++ F K 
Sbjct: 454 LRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGEYLGNNRLKLGFGK- 512

Query: 482 PSITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHG 303
                                            PT  + +  LS  +S+  +  H   +G
Sbjct: 513 -------------------------------SMPTNCVWLDGLSSNVSDQYLTRHFCRYG 541

Query: 302 TIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGSTIRISFSQMQNI*QFF 132
            +VK       G   ALV +   E A  A+      K+ G+ I++ F+  ++   F+
Sbjct: 542 PVVKVVFDRLKG--MALVLYNEIEYAQAAVKETKGRKIGGNKIKVDFANRESQLAFY 596

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>PTBP1_ARATH (Q9MAC5) Polypyrimidine tract-binding protein homolog 1|
          Length = 399

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
 Frame = -3

Query: 422 NSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQF 243
           +S+    +R+   P+K++H+  L  E  E+ +I+     G IV +K    + + QA V+F
Sbjct: 2   SSSGQTQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEF 61

Query: 242 ESEEEATEALVCKHAS-----KLEGSTIRISFSQMQNI 144
               +A  ++V  +AS     ++ G T+ I +S    I
Sbjct: 62  ADLNQAI-SMVSYYASSSEPAQIRGKTVYIQYSNRHEI 98



 Score = 32.3 bits (72), Expect = 1.3
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = -3

Query: 344 ISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGSTI 174
           ++ D +    S +GT+ K  +FE +G TQAL+Q+    +   A + K A  LEG  I
Sbjct: 256 VTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQY---SDIPTAAMAKEA--LEGHCI 307



 Score = 29.6 bits (65), Expect = 8.3
 Identities = 23/60 (38%), Positives = 29/60 (48%)
 Frame = -3

Query: 353 SPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGSTI 174
           S E+S D I    S  G + K   FE +   QALVQF   E A+ A      S L+G +I
Sbjct: 121 SHEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAA-----RSALDGRSI 175

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>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 22/75 (29%), Positives = 45/75 (60%)
 Frame = -3

Query: 380 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 201
           +K++ ++ LS   +ED++ E + E  T ++    +   K  A ++F S E+A +A+   +
Sbjct: 413 SKVLVVNNLSYSATEDSLRE-VFEKATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCN 471

Query: 200 ASKLEGSTIRISFSQ 156
            +++EG +IR+ FSQ
Sbjct: 472 NTEIEGRSIRLEFSQ 486



 Score = 32.3 bits (72), Expect = 1.3
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = -3

Query: 278 EASGKTQALVQFESEEEATEALVCKHASKLEGSTIRISFS 159
           + S K  A V+F +E+EA +AL  K  +++EG +I + F+
Sbjct: 357 DGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFT 396

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>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)|
          Length = 305

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
 Frame = -3

Query: 479 SITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGT 300
           ++  +P A D +T  L R  S          A  K + +  L  +++E  +IEH S+ GT
Sbjct: 64  AMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGT 123

Query: 299 IVKSKLF--EASGKTQ--ALVQFESEEEATEALVCK 204
           + K+++   + SGK +    V F++ + A +A V K
Sbjct: 124 VEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVK 159

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>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 4/131 (3%)
 Frame = -3

Query: 545 IHYLKGAMLLGQKLEVNFSKYPSITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIH 366
           I  L    + G+K++VN ++ P      +  D +T+         A++ +   +P K+ +
Sbjct: 142 IEKLNDTEIGGRKIKVNITEKPL-----EGMDIATTQ--------AEDSQFVESPYKV-Y 187

Query: 365 ISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQA----LVQFESEEEATEALVCKHA 198
           I  L+  ++ + + +  SE G ++ +K+    G +++     V F SEEE   A+   + 
Sbjct: 188 IGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNN 247

Query: 197 SKLEGSTIRIS 165
           S LEG  IR++
Sbjct: 248 SVLEGQKIRVN 258

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>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = -3

Query: 371 IHISALSPEISEDAIIEHLSEHGTIVKSKLFE---ASGKTQALVQFESEEEATEALVCKH 201
           +++  L P IS++ + E  S  GT+  SK+      + K    V F + EEATEA+    
Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 379

Query: 200 ASKLEGSTIRISFSQ 156
              +E   + ++ +Q
Sbjct: 380 GKMIESKPLYVAIAQ 394

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>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660|
           (Poly(A)-binding protein At2g36660) (PABP)
          Length = 609

 Score = 37.0 bits (84), Expect = 0.052
 Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
 Frame = -3

Query: 371 IHISALSPEISEDAIIEHLSEHGTIVKSKLF-EASGKTQ--ALVQFESEEEATEALVCKH 201
           I++  ++  ++E+ + +H S+ GTI  +KL  +  GK++    V F + EEA +A+   H
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365

Query: 200 ASKLEGSTIRISFSQ 156
                G  + ++ +Q
Sbjct: 366 GQMFHGKPLYVAIAQ 380

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>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 36.6 bits (83), Expect = 0.068
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
 Frame = -3

Query: 383 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLF--EASGKTQAL--VQFESEEEATEA 216
           PT  I++  +  +I +  + +  SEHG +V +++     SG+++    V   SE E +EA
Sbjct: 189 PTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEA 248

Query: 215 LVCKHASKLEGSTIRISFSQ 156
           +       L+G TIR++ ++
Sbjct: 249 IANLDGQTLDGRTIRVNAAE 268

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>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1|
          Length = 283

 Score = 36.2 bits (82), Expect = 0.089
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
 Frame = -3

Query: 383 PTKIIHISALSPEISEDAIIEHLSEHGTIVK-----SKLFEASGKTQALVQFESEEEATE 219
           PTK+ HI  L+  +++D I+E  S +G I        +      K  A V+FE+ EEA +
Sbjct: 137 PTKV-HIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEK 195

Query: 218 ALVCKHASKLEGSTIRIS 165
           AL      +++G  I  S
Sbjct: 196 ALKHMDGGQIDGQEITAS 213

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>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)|
           binding protein) (ePABP)
          Length = 629

 Score = 36.2 bits (82), Expect = 0.089
 Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 6/155 (3%)
 Frame = -3

Query: 659 KLFNLFSIYGNIVRIKVLRNXPDHA----LVQMADGLQTELAIHYLKGAMLLGQKLEVNF 492
           +L  +FS +GN + +KV+ +    +     V   +  + + A+  + G  + G+ + V  
Sbjct: 206 RLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGR 265

Query: 491 SKYPSITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLS 312
           ++            +      R N     N          +++  L   I +D + +  S
Sbjct: 266 AQKRIERQGELKRKFEQIKQERINRYQGVN----------LYVKNLDDGIDDDRLRKEFS 315

Query: 311 EHGTIVKSKLFEASGKTQ--ALVQFESEEEATEAL 213
            +GTI  +K+    G ++    V F S EEAT+A+
Sbjct: 316 PYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350

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>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic|
           poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B)
          Length = 629

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 6/155 (3%)
 Frame = -3

Query: 659 KLFNLFSIYGNIVRIKVLRNXPDHA----LVQMADGLQTELAIHYLKGAMLLGQKLEVNF 492
           +L  +FS +GN + +KV+ +    +     V   +  + + A+  + G  + G+ + V  
Sbjct: 206 RLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGR 265

Query: 491 SKYPSITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLS 312
           ++            +      R N     N          +++  L   I +D + +  S
Sbjct: 266 AQKRIERQGELKRKFEQIKQERINRYQGVN----------LYVKNLDDGIDDDRLRKEFS 315

Query: 311 EHGTIVKSKLFEASGKTQ--ALVQFESEEEATEAL 213
            +GTI  +K+    G ++    V F S EEAT+A+
Sbjct: 316 PYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAV 350

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>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 22/74 (29%), Positives = 40/74 (54%)
 Frame = -3

Query: 380 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 201
           +K + ++ LS   SE+ + E   +  +I   +  +   K  A V+F + E+A EAL   +
Sbjct: 460 SKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCN 519

Query: 200 ASKLEGSTIRISFS 159
            +++EG  IR+ FS
Sbjct: 520 NTEIEGRAIRLEFS 533

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>TNR6A_HUMAN (Q8NDV7) Trinucleotide repeat-containing gene 6A protein (CAG repeat|
            protein 26) (Glycin-tryptophan protein of 182 kDa) (GW182
            autoantigen) (GW1 protein) (EMSY interactor protein)
          Length = 1962

 Score = 34.7 bits (78), Expect = 0.26
 Identities = 23/85 (27%), Positives = 40/85 (47%)
 Frame = -3

Query: 380  TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 201
            T  + +  L+P+I    +     +HG ++   L    G   ALV++ S+EE  +A    H
Sbjct: 1780 TNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGN--ALVRYSSKEEVVKAQKSLH 1837

Query: 200  ASKLEGSTIRISFSQMQNI*QFFLE 126
               L  +TI   F+  + I +FF +
Sbjct: 1838 MCVLGNTTILAEFASEEEISRFFAQ 1862

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>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 34.7 bits (78), Expect = 0.26
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
 Frame = -3

Query: 452 DYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKL--- 282
           D STS     N    K       P+  + +  LS     DAI E  ++HG +V  ++   
Sbjct: 242 DMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTH 301

Query: 281 -FEASGKTQALVQFESEEEATEALVCKHASKLEGSTIRISFS 159
                 K    VQF + E+A +AL       ++   +R+ FS
Sbjct: 302 PETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFS 343

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>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic|
           poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A)
          Length = 629

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 6/155 (3%)
 Frame = -3

Query: 659 KLFNLFSIYGNIVRIKVLRNXPDHA----LVQMADGLQTELAIHYLKGAMLLGQKLEVNF 492
           +L  +FS +GN + +KV+ +    +     V   +  + + A+  + G  + G+ + V  
Sbjct: 206 RLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGR 265

Query: 491 SKYPSITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLS 312
           ++      +     +      R N     N          +++  L   I +D + +   
Sbjct: 266 AQKRIERQSELKRKFEQIKQERINRYQGVN----------LYVKNLDDGIDDDRLRKEFL 315

Query: 311 EHGTIVKSKLFEASGKTQ--ALVQFESEEEATEAL 213
            +GTI  +K+    G ++    V F S EEAT+A+
Sbjct: 316 PYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350

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>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41|
          Length = 356

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 3/169 (1%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGAML--LGQKLEVNFSKY 483
           L  LF  YG + R+ +       A V M D    E AI  L        G++L V ++K 
Sbjct: 18  LERLFRKYGKVERVDMKAGF---AFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKN 74

Query: 482 PSITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIE-HLSEH 306
                  D      S  +R +S+  +       P+K + +     + +    +E H   +
Sbjct: 75  -------DRGGAGRSGGSRRSSSGLR-------PSKTLFVINFDAQNTRTRDLERHFEPY 120

Query: 305 GTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGSTIRISFS 159
           G IV  ++     +  A +Q+E++E+AT AL   ++SKL    I + ++
Sbjct: 121 GKIVNVRI----RRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYA 165

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>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 13/178 (7%)
 Frame = -3

Query: 659 KLFNLFSIYGNIVRIKVLRN-----XPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVN 495
           +L  LF   GN+  ++V+ +           V M+   + E A     G  L G+ L VN
Sbjct: 106 QLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN 165

Query: 494 FSKYPSITPAPDAHDYST----SNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAI 327
                   P P   D  +    S+     S               +++  LS  + + A+
Sbjct: 166 AGP-----PPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMAL 220

Query: 326 IEHLSEHGTIVKSKLF--EASGKTQAL--VQFESEEEATEALVCKHASKLEGSTIRIS 165
               SE G +V++++     SG+++    V ++S +E   A+     + L+G  IR+S
Sbjct: 221 ESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278

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>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40|
          Length = 350

 Score = 33.9 bits (76), Expect = 0.44
 Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 3/169 (1%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGAML--LGQKLEVNFSKY 483
           L  LF  YG + R+ +       A V M D    E AI  L        G++L V ++K 
Sbjct: 18  LERLFRKYGKVERVDMKAGF---AFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTK- 73

Query: 482 PSITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIE-HLSEH 306
                +    D  +   +R +S+  +       P+K + +     + +    +E H   +
Sbjct: 74  -----SERGGDKRSGGGSRRSSSSMR-------PSKTLFVINFDADNTRTRDLEKHFEPY 121

Query: 305 GTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGSTIRISFS 159
           G IV  ++     +  A +Q+E++E+AT AL   + SKL    I + ++
Sbjct: 122 GKIVNVRI----RRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYA 166

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>S17P_SPIOL (O20252) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor|
           (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase)
           (SED(1,7)P2ase)
          Length = 387

 Score = 33.9 bits (76), Expect = 0.44
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 232 SSLSNCTRACVLPLASNSFDLTMVPCSLRCSMIASSDISGESAEM 366
           +S++ C+R+ VLP  S      +VP S+    + SS + GES  M
Sbjct: 3   TSMACCSRSIVLPRVSPQHSSALVPSSINLKSLKSSSLFGESLRM 47

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>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 33.1 bits (74), Expect = 0.76
 Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 22/196 (11%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVLRN-----XPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNF 492
           L  LF   GN+  ++V+ +           V M+   + E A     G  + G+ + VN 
Sbjct: 103 LAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNA 162

Query: 491 SKYPSITPAPDAHDYSTSNLNRFNSNV-------------AKNYRHCCAPTKIIHISALS 351
                  PAP   + S+    R  ++              A+  R   +  ++ ++  LS
Sbjct: 163 G------PAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRV-YVGNLS 215

Query: 350 PEISEDAIIEHLSEHGTIVKSKLF--EASGKTQAL--VQFESEEEATEALVCKHASKLEG 183
             + + A+ E  SE G +V +K+     SG+++    V + S +E  +A+   +   L+G
Sbjct: 216 WGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDG 275

Query: 182 STIRISFSQMQNI*QF 135
            +IR+S ++ +   QF
Sbjct: 276 RSIRVSAAEERPRRQF 291

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>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 32.7 bits (73), Expect = 0.99
 Identities = 21/71 (29%), Positives = 37/71 (52%)
 Frame = -3

Query: 380 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 201
           +K + +S LS   +E+ + E   +   I   +  +   K  A ++F S E+A EAL   +
Sbjct: 484 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCN 543

Query: 200 ASKLEGSTIRI 168
             ++EG TIR+
Sbjct: 544 KMEIEGRTIRL 554

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>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 32.7 bits (73), Expect = 0.99
 Identities = 15/72 (20%), Positives = 35/72 (48%)
 Frame = -3

Query: 371 IHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASK 192
           +++  L  ++ E  + +   ++G I    +    G   A V+FE   +A +A+  +   +
Sbjct: 11  VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70

Query: 191 LEGSTIRISFSQ 156
            +G  IR+ F++
Sbjct: 71  FDGRRIRVEFTR 82

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>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)|
          Length = 292

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
 Frame = -3

Query: 371 IHISALSPEISEDAIIEHLSEHGTIVKSKLF--EASGKTQAL--VQFESEEEATEALVCK 204
           +++  LS  + + A+ E  SE G +V +K+     SG+++    V + S +E  +A+   
Sbjct: 210 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSL 269

Query: 203 HASKLEGSTIRISFSQMQNI*QF 135
           +   L+G +IR+S ++ +   QF
Sbjct: 270 NGIDLDGRSIRVSAAEERPRRQF 292

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>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
 Frame = -3

Query: 338 EDAIIEHL-SEHGTIVKSKLF--EASGKTQAL--VQFESEEEATEALVCKHASKLEGSTI 174
           +DA +E L SEHG +V +++     +G+++    V   SE E ++A+       L+G TI
Sbjct: 242 DDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTI 301

Query: 173 RISFSQ 156
           R++ ++
Sbjct: 302 RVNVAE 307

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>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
 Frame = -3

Query: 371 IHISALSPEISEDAIIEHLSEHGTIVKSKLFE--ASGKTQA--LVQFESEEEATEALVCK 204
           +++  L  ++SE  + E   + G +V + + +   +G+ Q    V+F SEE+A  A+   
Sbjct: 15  VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74

Query: 203 HASKLEGSTIRISFSQMQN 147
           +  KL G  IR++ +   N
Sbjct: 75  NMIKLYGKPIRVNKASAHN 93

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>PDXJ_PORGI (Q51843) Pyridoxal phosphate biosynthetic protein pdxJ (PNP|
           synthase)
          Length = 238

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 476 ITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLS 312
           +T  PDA D  TSN      +VA+NY H C   +  H   +   I  D  ++++S
Sbjct: 89  VTMVPDAPDVLTSNAGW---DVARNYDHLCRLVERFHAWGIRTSIFIDTDLDNIS 140

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>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1|
          Length = 346

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
 Frame = -3

Query: 431 NRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLF--EASGKTQ 258
           NR  SNV+         TK +++S +  + +ED + E+ +++GT+ KS++   +A+ K +
Sbjct: 105 NRSESNVS---------TKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPR 155

Query: 257 --ALVQFESEEEATEALVCK 204
               V F+  +   + ++ K
Sbjct: 156 GFGFVTFDDHDSVDQCVLQK 175

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>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 21/71 (29%), Positives = 36/71 (50%)
 Frame = -3

Query: 380 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 201
           +K + +S LS   +E+ + E   +   I   +      K  A ++F S E+A EAL   +
Sbjct: 487 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCN 546

Query: 200 ASKLEGSTIRI 168
             ++EG TIR+
Sbjct: 547 KMEIEGRTIRL 557

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>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)|
          Length = 197

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 644 FSIYGNIVRIKVLRNXPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSK 486
           F+ YG +  + +  N P  A V+       E A   L G+ LLG +L V  SK
Sbjct: 27  FTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELLGSQLRVEISK 79

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>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (RA301)
          Length = 288

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
 Frame = -3

Query: 458 AHDYST-SNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVK-SK 285
           +H +S  S   R   N A    +CC     + +  LS   +E  + E  S++G I   S 
Sbjct: 95  SHSHSPMSTRRRHVGNRANPDPNCC-----LGVFGLSLYTTERDLREVFSKYGPIADVSI 149

Query: 284 LFEASGKTQ---ALVQFESEEEATEALVCKHASKLEGSTIRISFS 159
           +++   +     A V FE+ ++A EA    +  +L+G  IR+ FS
Sbjct: 150 VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194

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>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (Silica-induced gene 41 protein) (SIG-41)
          Length = 288

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
 Frame = -3

Query: 458 AHDYST-SNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVK-SK 285
           +H +S  S   R   N A    +CC     + +  LS   +E  + E  S++G I   S 
Sbjct: 95  SHSHSPMSTRRRHVGNRANPDPNCC-----LGVFGLSLYTTERDLREVFSKYGPIADVSI 149

Query: 284 LFEASGKTQ---ALVQFESEEEATEALVCKHASKLEGSTIRISFS 159
           +++   +     A V FE+ ++A EA    +  +L+G  IR+ FS
Sbjct: 150 VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194

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>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog)
          Length = 288

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
 Frame = -3

Query: 458 AHDYST-SNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVK-SK 285
           +H +S  S   R   N A    +CC     + +  LS   +E  + E  S++G I   S 
Sbjct: 95  SHSHSPMSTRRRHVGNRANPDPNCC-----LGVFGLSLYTTERDLREVFSKYGPIADVSI 149

Query: 284 LFEASGKTQ---ALVQFESEEEATEALVCKHASKLEGSTIRISFS 159
           +++   +     A V FE+ ++A EA    +  +L+G  IR+ FS
Sbjct: 150 VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194

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>ILL1_ARATH (P54969) IAA-amino acid hydrolase ILR1-like 1 precursor (EC|
           3.5.1.-)
          Length = 438

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +3

Query: 3   AGXILQPHRRYRQQSLVMVQTKTGTHNKLGKFRKKEGSSHFFQEELLYVLHLGERNPNGG 182
           A  ILQ HR++ Q ++V++           K  ++EG+      E ++ +HL  R P G 
Sbjct: 148 AAKILQQHRQHLQGTVVLIFQPAEEGLSGAKMMREEGA--LKNVEAIFGIHLSPRTPFGK 205

Query: 183 SLELA 197
           +  LA
Sbjct: 206 AASLA 210

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>YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4 intergenic|
           region
          Length = 1140

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +1

Query: 163 KEILMVDPSSLLACLQTRASVASSSLSNCTRACVLPLASNSFDLTMVPCSLRCSMIASSD 342
           KE+     S + + L + +S ASS++S       LP +S    +T  P S       SS 
Sbjct: 217 KEVFSSSTSDVSSLLSSTSSPASSTISE-----TLPFSSTILSITSSPVSSEAPSATSSS 271

Query: 343 ISGESA 360
           +S E++
Sbjct: 272 VSSEAS 277

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>NUCL_MOUSE (P09405) Nucleolin (Protein C23)|
          Length = 706

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = -3

Query: 380 TKIIHISALSPEISEDAIIEHLSEHGTIVK-SKLFEASGKTQALVQFESEEEATEALVCK 204
           +K + +S LS   +++ + E + E  T +K  +      K  A ++F S E+A EAL   
Sbjct: 485 SKTLVLSNLSYSATKETL-EEVFEKATFIKVPQNPHGKPKGYAFIEFASFEDAKEALNSC 543

Query: 203 HASKLEGSTIRI 168
           +  ++EG TIR+
Sbjct: 544 NKMEIEGRTIRL 555

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>DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111, chloroplast|
           precursor
          Length = 387

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
 Frame = -3

Query: 338 EDAIIEHLSEHGTIVKSKLFEASGKT-------QALVQFESEEEATEALVCKHASKLEGS 180
           ED +     ++GT+ +  +FE +          +  VQF   EE T+ALV        G 
Sbjct: 301 EDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRYFGGR 360

Query: 179 TIRISF 162
           T+R +F
Sbjct: 361 TVRATF 366

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>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
 Frame = -3

Query: 383 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLF--EASGKTQAL--VQFESEEEATEA 216
           P   +++  L  ++    + +  SEHG +V++++     +G+++    V     +E  EA
Sbjct: 242 PAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301

Query: 215 LVCKHASKLEGSTIRISFSQ 156
           +       LEG  IR++ ++
Sbjct: 302 ISALDGQNLEGRAIRVNVAE 321

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>YKV4_YEAST (P36036) Hypothetical 23.8 kDa protein in URA1-DOA1 intergenic|
           region
          Length = 203

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 17/76 (22%), Positives = 36/76 (47%)
 Frame = -3

Query: 377 KIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHA 198
           K I IS +  ++S+  + + + E G+ + SK+F+       + +FE  E   + +   + 
Sbjct: 64  KRIRISKIPLDVSDYTLDDMIKEFGSPIFSKIFDNKEDRTCIYEFEDPEVLEKIVERYNG 123

Query: 197 SKLEGSTIRISFSQMQ 150
            +L  + I +   Q Q
Sbjct: 124 HELHNAKIEVEIYQPQ 139

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>NUCL_PONPY (Q5RF26) Nucleolin|
          Length = 711

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -3

Query: 380 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 201
           +K + +S LS   +E+ + E   +   I   +      K  A ++F S E+A EAL   +
Sbjct: 486 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 545

Query: 200 ASKLEGSTIRI 168
             ++EG  IR+
Sbjct: 546 KREIEGRAIRL 556

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>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor|
           B1) (SAF-B)
          Length = 931

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
 Frame = -3

Query: 656 LFNLFSIYGNIVRIKVLRNXPD-----HALVQMADGLQTELAIHYLKGAMLLGQKLEVNF 492
           L NLFS YG +V  KV+ N        +  V M+   +    I++L    L G+ + V  
Sbjct: 444 LKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEK 503

Query: 491 SK-YPSITPAPDAHDYSTSNLNRFNSNVAKNYR 396
           +K  P+    PD  D  +       S+ + N +
Sbjct: 504 AKSEPAGKRVPDRRDGDSKKEKTSTSDRSANLK 536

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>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2|
          Length = 326

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 41/167 (24%), Positives = 62/167 (37%), Gaps = 15/167 (8%)
 Frame = -3

Query: 647 LFSIYGNIVRIKVLRN-----XPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNF-SK 486
           +FS YG IV I ++R+           +   D   T LA+    G  + G+ + V+  S 
Sbjct: 55  VFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVSN 114

Query: 485 YPSITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEH 306
           Y +   + D  D  T  L           + C   T      +  PE+SED   +   +H
Sbjct: 115 YRAPQESEDVDDV-TRELQE---------KGCGVKTP----PSSPPEVSEDEDAKLTKKH 160

Query: 305 GTIVKSKLFEASGKTQALVQFES---------EEEATEALVCKHASK 192
               K K      KT+   Q E          +E+  E    KH+SK
Sbjct: 161 KKDKKEKKKRKKEKTEGQAQAEQPSCSRSATVKEKKDERASRKHSSK 207

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>NUCL_MACFA (Q4R4J7) Nucleolin|
          Length = 710

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -3

Query: 380 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 201
           +K + +S LS   +E+ + E   +   I   +      K  A ++F S E+A EAL   +
Sbjct: 485 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 544

Query: 200 ASKLEGSTIRI 168
             ++EG  IR+
Sbjct: 545 KREIEGRAIRL 555

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>NUCL_HUMAN (P19338) Nucleolin (Protein C23)|
          Length = 709

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -3

Query: 380 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 201
           +K + +S LS   +E+ + E   +   I   +      K  A ++F S E+A EAL   +
Sbjct: 484 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 543

Query: 200 ASKLEGSTIRI 168
             ++EG  IR+
Sbjct: 544 KREIEGRAIRL 554

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>YJ9G_YEAST (P47170) Hypothetical 182.0 kDa protein in NMD5-HOM6 intergenic|
           region
          Length = 1584

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +1

Query: 91  ESLERKRGHLTFSRKNCYMFCIWEKEILMVDPSSLLACLQTRASVASSSLSN 246
           E++  KRG+L   +KN  +F +   EI+   PSS L    TR S   S++S+
Sbjct: 765 ENVISKRGNLII-KKNLSIFGLPSNEIMSGSPSSYLGSSHTRTSSKLSNMSD 815

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>DNE21_RHIME (Q92LA6) Error-prone DNA polymerase 1 (EC 2.7.7.7)|
          Length = 1116

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
 Frame = +3

Query: 90  GKFRKKEGSSHF-------FQEELLYVLHLGERNPNGGSLE-LARMLTDQSFGRLFLALE 245
           G  R K+G           +QEELL ++  GE  P   SLE L   L + +  RL+L L 
Sbjct: 100 GNLRSKKGDCTLHLADLLEWQEELLLIVMQGEGRPEPESLEVLLGTLKEHAGNRLYLGLA 159

Query: 246 LH 251
            H
Sbjct: 160 PH 161

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>CKAP5_HUMAN (Q14008) Cytoskeleton-associated protein 5 (Colonic and hepatic|
           tumor over-expressed protein) (Ch-TOG protein)
          Length = 2032

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = -3

Query: 413 VAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALV 249
           +A+++RHC A T  +  S L P  +  A+++H+++    V+   FEA G    +V
Sbjct: 420 IARSFRHCTAST--LPKSLLKPFCA--ALLKHINDSAPEVRDAAFEALGTALKVV 470


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,701,974
Number of Sequences: 219361
Number of extensions: 1828424
Number of successful extensions: 5032
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 4839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5009
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6314008338
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result