Clone Information

BLAST Search Result

Clone Name	rbags31e15
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK066017.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	555	e-155
2	dbj\|AK071393.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	547	e-152
3	gb\|AC108224.6\| Oryza sativa (japonica cultivar-group) chromosome...	190	4e-45
4	gb\|AC108223.5\| Oryza sativa (japonica cultivar-group) chromosome...	190	4e-45
5	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	190	4e-45
6	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	190	4e-45
7	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	54	6e-04
8	dbj\|AP005905.3\| Oryza sativa (japonica cultivar-group) genomic D...	54	6e-04
9	dbj\|AP005590.3\| Oryza sativa (japonica cultivar-group) genomic D...	54	6e-04
10	ref\|XM_763859.1\| Giardia lamblia ATCC 50803 hypothetical protein...	46	0.15
11	emb\|AL731616.5\|OSJN00262 Oryza sativa genomic DNA, chromosome 4,...	44	0.59
12	emb\|AL731600.3\|OSJN00243 Oryza sativa genomic DNA, chromosome 4,...	44	0.59
13	gb\|AC024934.38\| Homo sapiens 12 BAC RP11-329A19 (Roswell Park Ca...	44	0.59
14	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.59
15	dbj\|AK072373.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.59
16	emb\|AL731629.2\|OSJN00274 Oryza sativa genomic DNA, chromosome 4,...	44	0.59
17	gb\|AC146051.2\| Pan troglodytes BAC clone RP43-73B15 from 7, comp...	42	2.3
18	gb\|AC084872.6\| Homo sapiens BAC clone RP11-702N14 from 7, comple...	42	2.3
19	emb\|AL359697.23\| Human DNA sequence from clone RP11-399C16 on ch...	42	2.3
20	gb\|AC008731.8\| Homo sapiens chromosome 16 clone CTD-2515A14, com...	42	2.3
21	ref\|XM_419659.1\| PREDICTED: Gallus gallus similar to SAM and SH3...	40	9.2
22	gb\|AC127415.3\| Mus musculus BAC clone RP23-450L4 from chromosome...	40	9.2
23	gb\|DQ452068.1\| Homo sapiens lipoprotein, Lp(a) (LPA) gene, compl...	40	9.2
24	gb\|AE017244.1\| Mycoplasma hyopneumoniae 7448, complete genome	40	9.2
25	gb\|AC144430.14\| Medicago truncatula clone mth2-16j2, complete se...	40	9.2
26	emb\|Z99495.1\|HS441J1 Human DNA sequence from clone RP3-441J1 on ...	40	9.2
27	emb\|AL596089.19\| Human DNA sequence from clone RP11-414A5 on chr...	40	9.2
28	emb\|AL390242.17\| Human DNA sequence from clone RP11-31F15 on chr...	40	9.2
29	emb\|AL078462.9\|HSJ159G19 Human DNA sequence from clone RP1-159G1...	40	9.2
30	gb\|AE006640.1\| Homo sapiens 16p13.3 sequence section 8 of 8	40	9.2
31	gb\|AC097639.2\| Homo sapiens chromosome 3 clone RP11-384L8, compl...	40	9.2
32	gb\|AC107878.2\| Homo sapiens chromosome 18, clone RP11-138C8, com...	40	9.2
33	gb\|AC103558.2\| Homo sapiens chromosome 3 clone RP11-46B13, compl...	40	9.2
34	gb\|AC091823.3\| Homo sapiens chromosome 5 clone CTC-417G23, compl...	40	9.2
35	gb\|AC013660.9\| Homo sapiens, clone RP11-20A14, complete sequence	40	9.2
36	dbj\|AK049877.1\| Mus musculus adult male hippocampus cDNA, RIKEN ...	40	9.2
37	gb\|AC008209.5\|AC008209 Drosophila melanogaster, chromosome 3R, r...	40	9.2
38	gb\|AC010580.5\|AC010580 Drosophila melanogaster, chromosome 3R, r...	40	9.2
39	gb\|AC011310.3\|AC011310 Homo sapiens BAC clone CTD-2590C17 from 7...	40	9.2
40	gb\|AY190083.1\| Entamoeba invadens rDNA-containing episome sequence	40	9.2
41	gb\|AC018641.3\|AC018641 Human Chromosome 7 clone RP11-182G3, comp...	40	9.2
42	gb\|AC018637.3\|AC018637 Human Chromosome 7 clone RP11-175P8, comp...	40	9.2
43	dbj\|AK000115.1\| Homo sapiens cDNA FLJ20108 fis, clone COL05052	40	9.2
44	gb\|AE003753.3\| Drosophila melanogaster chromosome 3R, section 91...	40	9.2
45	emb\|AL772399.9\| Mouse DNA sequence from clone RP23-220L1 on chro...	40	9.2
46	emb\|BX000694.9\| Mouse DNA sequence from clone RP23-30B5 on chrom...	40	9.2
47	emb\|AL928992.7\| Mouse DNA sequence from clone RP23-208O9 on chro...	40	9.2
48	gb\|AC171070.2\| Rhesus Macaque CHR5 BAC CH250-450H6 (Children's H...	40	9.2

>dbj|AK066017.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050C10, full
            insert sequence
          Length = 2235

 Score =  555 bits (280), Expect = e-155
 Identities = 452/508 (88%), Gaps = 6/508 (1%)
 Strand = Plus / Minus

                                                                        
Query: 149  tcctaggaaacagaagctcgtgtatctgcttctctgcgctgaactccgaactagcctttg 208
            |||||||||||||||| |||||||| ||||||||||| |  ||||| ||| | |||||||
Sbjct: 1538 tcctaggaaacagaagttcgtgtatttgcttctctgcaccaaactctgaagtggcctttg 1479

                                                                        
Query: 209  tagggaaagcaaatctcagtgtctgcacttgtgttcctgagcacaatctcaagtcgaacc 268
             |||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 1478 cagggaacgcaaatctcagtgtctgcacttgtgttcctgagcacactctcaagtcaaacc 1419

                                                                        
Query: 269  caaggcagtccacgccgataattgctgcttcctctacttggatggccttgcacctccaac 328
            ||||||||||||| || || |  ||||| ||||||| ||||||||||||||||||||| |
Sbjct: 1418 caaggcagtccactccaatgacagctgcctcctctatttggatggccttgcacctccagc 1359

                                                                        
Query: 329  agagtgatttcagagcttgtgttatcttgtctccaccggctctcaagcgcgatattatgt 388
            |||||||||||||||| ||  |||||||||||||||| ||||||||||||||||||||||
Sbjct: 1358 agagtgatttcagagcctggcttatcttgtctccaccagctctcaagcgcgatattatgt 1299

                                                                        
Query: 389  tcggtgcagagtgcgcgatgatgtccggtctagatttccggtattcttctatctttacct 448
            |||||||||| ||||| ||||| || || |||| ||||||||||||  ||||||||||||
Sbjct: 1298 tcggtgcagaatgcgcaatgatatctggcctagctttccggtattcccctatctttacct 1239

                                                                        
Query: 449  tgggctctgtaccatatgcagtgatcagctcaatgctgagaacttcaaccttgaaaaatg 508
            | ||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1238 ttggctcagttccatatgcagtgatcagctcaatgctcagaacctcaaccttgaaaaatg 1179

                                                                        
Query: 509  tagccccacttccctttttgtcgtctttcagtggttcatcaccatttaataaatgcctgg 568
            |||| |||||   ||  ||||  |||||| |||||||||   ||||| |||||||||| |
Sbjct: 1178 tagcaccact---ctccttgttatctttccgtggttcat---catttgataaatgccttg 1125

                                                                        
Query: 569  aaaccatggtgctctcttcagcaaacgcaggtctcagctgaccctcaacaacaaggcttg 628
            ||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct: 1124 aaaccatggtgctctcttcagcaaaggctggtctcagttgaccctcaacaacaaggcttg 1065

                                        
Query: 629  caggtggtcggtccaaccaatctatact 656
            ||||||||| ||||||||| ||||||||
Sbjct: 1064 caggtggtctgtccaaccagtctatact 1037

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>dbj|AK071393.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023096A11, full
            insert sequence
          Length = 1612

 Score =  547 bits (276), Expect = e-152
 Identities = 451/508 (88%), Gaps = 6/508 (1%)
 Strand = Plus / Minus

                                                                        
Query: 149  tcctaggaaacagaagctcgtgtatctgcttctctgcgctgaactccgaactagcctttg 208
            |||||||||||||||| |||||||| ||||||||||| |  ||||| ||| | |||||||
Sbjct: 1452 tcctaggaaacagaagttcgtgtatttgcttctctgcaccaaactctgaagtggcctttg 1393

                                                                        
Query: 209  tagggaaagcaaatctcagtgtctgcacttgtgttcctgagcacaatctcaagtcgaacc 268
             |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct: 1392 cagggaacgcaaatctcagtgcctgcacttgtgttcctgagcacactctcaagtcaaacc 1333

                                                                        
Query: 269  caaggcagtccacgccgataattgctgcttcctctacttggatggccttgcacctccaac 328
            ||||||||||||| || || |  ||||| ||||||| ||||||||||||||||||||| |
Sbjct: 1332 caaggcagtccactccaatgacagctgcctcctctatttggatggccttgcacctccagc 1273

                                                                        
Query: 329  agagtgatttcagagcttgtgttatcttgtctccaccggctctcaagcgcgatattatgt 388
            |||||||||||||||| ||  |||||||||||||||| ||||||||||||||||||||||
Sbjct: 1272 agagtgatttcagagcctggcttatcttgtctccaccagctctcaagcgcgatattatgt 1213

                                                                        
Query: 389  tcggtgcagagtgcgcgatgatgtccggtctagatttccggtattcttctatctttacct 448
            |||||||||| ||||| ||||| || || |||| ||||||||||||  ||||||||||||
Sbjct: 1212 tcggtgcagaatgcgcaatgatatctggcctagctttccggtattcccctatctttacct 1153

                                                                        
Query: 449  tgggctctgtaccatatgcagtgatcagctcaatgctgagaacttcaaccttgaaaaatg 508
            | ||||| || |||||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct: 1152 ttggctcagttccatatgcagtgatcagctcaatgctcagaacctcaaccttgaaaaacg 1093

                                                                        
Query: 509  tagccccacttccctttttgtcgtctttcagtggttcatcaccatttaataaatgcctgg 568
            |||| ||||| |||   ||||  |||||| |||||||||   ||||| |||||||||| |
Sbjct: 1092 tagcaccactcccc---ttgttatctttccgtggttcat---catttgataaatgccttg 1039

                                                                        
Query: 569  aaaccatggtgctctcttcagcaaacgcaggtctcagctgaccctcaacaacaaggcttg 628
            ||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct: 1038 aaaccatggtgctctcttcagcaaaggctggtctcagttgaccctcaacaacaaggcttg 979

                                        
Query: 629  caggtggtcggtccaaccaatctatact 656
            ||||||||| ||||||||| ||||||||
Sbjct: 978  caggtggtctgtccaaccagtctatact 951

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>gb|AC108224.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0038F07, complete sequence
          Length = 175703

 Score =  190 bits (96), Expect = 4e-45
 Identities = 141/156 (90%)
 Strand = Plus / Minus

                                                                        
Query: 299  cctctacttggatggccttgcacctccaacagagtgatttcagagcttgtgttatcttgt 358
            |||||| ||||||||||||||||||||| ||||||||||||||||| ||  |||||||||
Sbjct: 2283 cctctatttggatggccttgcacctccagcagagtgatttcagagcctggcttatcttgt 2224

                                                                        
Query: 359  ctccaccggctctcaagcgcgatattatgttcggtgcagagtgcgcgatgatgtccggtc 418
            ||||||| |||||||||||||||||||||||||||||||| ||||| ||||| || || |
Sbjct: 2223 ctccaccagctctcaagcgcgatattatgttcggtgcagaatgcgcaatgatatctggcc 2164

                                                
Query: 419  tagatttccggtattcttctatctttaccttgggct 454
            ||| ||||||||||||  ||||||||||||| ||||
Sbjct: 2163 tagctttccggtattcccctatctttacctttggct 2128



 Score =  151 bits (76), Expect = 3e-33
 Identities = 94/100 (94%)
 Strand = Plus / Minus

                                                                        
Query: 557  ataaatgcctggaaaccatggtgctctcttcagcaaacgcaggtctcagctgaccctcaa 616
            |||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct: 1826 ataaatgccttgaaaccatggtgctctcttcagcaaaggctggtctcagttgaccctcaa 1767

                                                    
Query: 617  caacaaggcttgcaggtggtcggtccaaccaatctatact 656
            ||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 1766 caacaaggcttgcaggtggtctgtccaaccagtctatact 1727



 Score =  125 bits (63), Expect = 2e-25
 Identities = 75/79 (94%)
 Strand = Plus / Minus

                                                                        
Query: 203  cctttgtagggaaagcaaatctcagtgtctgcacttgtgttcctgagcacaatctcaagt 262
            |||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2469 cctttgcagggaacgcaaatctcagtgtctgcacttgtgttcctgagcacactctcaagt 2410

                               
Query: 263  cgaacccaaggcagtccac 281
            | |||||||||||||||||
Sbjct: 2409 caaacccaaggcagtccac 2391



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                       
Query: 460  ccatatgcagtgatcagctcaatgctgagaacttcaaccttgaaaaatgtagccccact 518
            |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct: 2006 ccatatgcagtgatcagctcaatgctcagaacctcaaccttgaaaaatgtagcaccact 1948



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 149  tcctaggaaacagaagctcgtgtatctgcttctctgc 185
            |||||||||||||||| |||||||| |||||||||||
Sbjct: 2700 tcctaggaaacagaagttcgtgtatttgcttctctgc 2664

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>gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019A16,
              complete sequence
          Length = 175425

 Score =  190 bits (96), Expect = 4e-45
 Identities = 141/156 (90%)
 Strand = Plus / Minus

                                                                          
Query: 299    cctctacttggatggccttgcacctccaacagagtgatttcagagcttgtgttatcttgt 358
              |||||| ||||||||||||||||||||| ||||||||||||||||| ||  |||||||||
Sbjct: 152520 cctctatttggatggccttgcacctccagcagagtgatttcagagcctggcttatcttgt 152461

                                                                          
Query: 359    ctccaccggctctcaagcgcgatattatgttcggtgcagagtgcgcgatgatgtccggtc 418
              ||||||| |||||||||||||||||||||||||||||||| ||||| ||||| || || |
Sbjct: 152460 ctccaccagctctcaagcgcgatattatgttcggtgcagaatgcgcaatgatatctggcc 152401

                                                  
Query: 419    tagatttccggtattcttctatctttaccttgggct 454
              ||| ||||||||||||  ||||||||||||| ||||
Sbjct: 152400 tagctttccggtattcccctatctttacctttggct 152365



 Score =  151 bits (76), Expect = 3e-33
 Identities = 94/100 (94%)
 Strand = Plus / Minus

                                                                          
Query: 557    ataaatgcctggaaaccatggtgctctcttcagcaaacgcaggtctcagctgaccctcaa 616
              |||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct: 152063 ataaatgccttgaaaccatggtgctctcttcagcaaaggctggtctcagttgaccctcaa 152004

                                                      
Query: 617    caacaaggcttgcaggtggtcggtccaaccaatctatact 656
              ||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 152003 caacaaggcttgcaggtggtctgtccaaccagtctatact 151964



 Score =  125 bits (63), Expect = 2e-25
 Identities = 75/79 (94%)
 Strand = Plus / Minus

                                                                          
Query: 203    cctttgtagggaaagcaaatctcagtgtctgcacttgtgttcctgagcacaatctcaagt 262
              |||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 152706 cctttgcagggaacgcaaatctcagtgtctgcacttgtgttcctgagcacactctcaagt 152647

                                 
Query: 263    cgaacccaaggcagtccac 281
              | |||||||||||||||||
Sbjct: 152646 caaacccaaggcagtccac 152628



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                         
Query: 460    ccatatgcagtgatcagctcaatgctgagaacttcaaccttgaaaaatgtagccccact 518
              |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct: 152243 ccatatgcagtgatcagctcaatgctcagaacctcaaccttgaaaaatgtagcaccact 152185



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                   
Query: 149    tcctaggaaacagaagctcgtgtatctgcttctctgc 185
              |||||||||||||||| |||||||| |||||||||||
Sbjct: 152937 tcctaggaaacagaagttcgtgtatttgcttctctgc 152901

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  190 bits (96), Expect = 4e-45
 Identities = 141/156 (90%)
 Strand = Plus / Minus

                                                                            
Query: 299      cctctacttggatggccttgcacctccaacagagtgatttcagagcttgtgttatcttgt 358
                |||||| ||||||||||||||||||||| ||||||||||||||||| ||  |||||||||
Sbjct: 19283732 cctctatttggatggccttgcacctccagcagagtgatttcagagcctggcttatcttgt 19283673

                                                                            
Query: 359      ctccaccggctctcaagcgcgatattatgttcggtgcagagtgcgcgatgatgtccggtc 418
                ||||||| |||||||||||||||||||||||||||||||| ||||| ||||| || || |
Sbjct: 19283672 ctccaccagctctcaagcgcgatattatgttcggtgcagaatgcgcaatgatatctggcc 19283613

                                                    
Query: 419      tagatttccggtattcttctatctttaccttgggct 454
                ||| ||||||||||||  ||||||||||||| ||||
Sbjct: 19283612 tagctttccggtattcccctatctttacctttggct 19283577



 Score =  151 bits (76), Expect = 3e-33
 Identities = 94/100 (94%)
 Strand = Plus / Minus

                                                                            
Query: 557      ataaatgcctggaaaccatggtgctctcttcagcaaacgcaggtctcagctgaccctcaa 616
                |||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct: 19283275 ataaatgccttgaaaccatggtgctctcttcagcaaaggctggtctcagttgaccctcaa 19283216

                                                        
Query: 617      caacaaggcttgcaggtggtcggtccaaccaatctatact 656
                ||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 19283215 caacaaggcttgcaggtggtctgtccaaccagtctatact 19283176



 Score =  125 bits (63), Expect = 2e-25
 Identities = 75/79 (94%)
 Strand = Plus / Minus

                                                                            
Query: 203      cctttgtagggaaagcaaatctcagtgtctgcacttgtgttcctgagcacaatctcaagt 262
                |||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 19283918 cctttgcagggaacgcaaatctcagtgtctgcacttgtgttcctgagcacactctcaagt 19283859

                                   
Query: 263      cgaacccaaggcagtccac 281
                | |||||||||||||||||
Sbjct: 19283858 caaacccaaggcagtccac 19283840



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                           
Query: 460      ccatatgcagtgatcagctcaatgctgagaacttcaaccttgaaaaatgtagccccact 518
                |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct: 19283455 ccatatgcagtgatcagctcaatgctcagaacctcaaccttgaaaaatgtagcaccact 19283397



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                     
Query: 149      tcctaggaaacagaagctcgtgtatctgcttctctgc 185
                |||||||||||||||| |||||||| |||||||||||
Sbjct: 19284149 tcctaggaaacagaagttcgtgtatttgcttctctgc 19284113

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  190 bits (96), Expect = 4e-45
 Identities = 141/156 (90%)
 Strand = Plus / Minus

                                                                            
Query: 299      cctctacttggatggccttgcacctccaacagagtgatttcagagcttgtgttatcttgt 358
                |||||| ||||||||||||||||||||| ||||||||||||||||| ||  |||||||||
Sbjct: 19443281 cctctatttggatggccttgcacctccagcagagtgatttcagagcctggcttatcttgt 19443222

                                                                            
Query: 359      ctccaccggctctcaagcgcgatattatgttcggtgcagagtgcgcgatgatgtccggtc 418
                ||||||| |||||||||||||||||||||||||||||||| ||||| ||||| || || |
Sbjct: 19443221 ctccaccagctctcaagcgcgatattatgttcggtgcagaatgcgcaatgatatctggcc 19443162

                                                    
Query: 419      tagatttccggtattcttctatctttaccttgggct 454
                ||| ||||||||||||  ||||||||||||| ||||
Sbjct: 19443161 tagctttccggtattcccctatctttacctttggct 19443126



 Score =  151 bits (76), Expect = 3e-33
 Identities = 94/100 (94%)
 Strand = Plus / Minus

                                                                            
Query: 557      ataaatgcctggaaaccatggtgctctcttcagcaaacgcaggtctcagctgaccctcaa 616
                |||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct: 19442824 ataaatgccttgaaaccatggtgctctcttcagcaaaggctggtctcagttgaccctcaa 19442765

                                                        
Query: 617      caacaaggcttgcaggtggtcggtccaaccaatctatact 656
                ||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 19442764 caacaaggcttgcaggtggtctgtccaaccagtctatact 19442725



 Score =  125 bits (63), Expect = 2e-25
 Identities = 75/79 (94%)
 Strand = Plus / Minus

                                                                            
Query: 203      cctttgtagggaaagcaaatctcagtgtctgcacttgtgttcctgagcacaatctcaagt 262
                |||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 19443467 cctttgcagggaacgcaaatctcagtgtctgcacttgtgttcctgagcacactctcaagt 19443408

                                   
Query: 263      cgaacccaaggcagtccac 281
                | |||||||||||||||||
Sbjct: 19443407 caaacccaaggcagtccac 19443389



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                           
Query: 460      ccatatgcagtgatcagctcaatgctgagaacttcaaccttgaaaaatgtagccccact 518
                |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct: 19443004 ccatatgcagtgatcagctcaatgctcagaacctcaaccttgaaaaatgtagcaccact 19442946



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                     
Query: 149      tcctaggaaacagaagctcgtgtatctgcttctctgc 185
                |||||||||||||||| |||||||| |||||||||||
Sbjct: 19443698 tcctaggaaacagaagttcgtgtatttgcttctctgc 19443662

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                          
Query: 54      ataaatttcctacaaaaagaagaaaat 80
               |||||||||||||||||||||||||||
Sbjct: 3894062 ataaatttcctacaaaaagaagaaaat 3894036

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>dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1080A02
          Length = 151360

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                         
Query: 54     ataaatttcctacaaaaagaagaaaat 80
              |||||||||||||||||||||||||||
Sbjct: 133578 ataaatttcctacaaaaagaagaaaat 133552

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>dbj|AP005590.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0574F11
          Length = 159891

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                        
Query: 54    ataaatttcctacaaaaagaagaaaat 80
             |||||||||||||||||||||||||||
Sbjct: 25574 ataaatttcctacaaaaagaagaaaat 25548

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>ref|XM_763859.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_577_4656_15497)
            partial mRNA
          Length = 10842

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 470  tgatcagctcaatgctgagaacttcaa 496
            |||||||||||||||||||||| ||||
Sbjct: 5569 tgatcagctcaatgctgagaacgtcaa 5543

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>emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073E02,
              complete sequence
          Length = 139080

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 54     ataaatttcctacaaaaagaagaaaa 79
              ||||||||||| ||||||||||||||
Sbjct: 103091 ataaatttcctgcaaaaagaagaaaa 103116

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>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08,
             complete sequence
          Length = 145670

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 54    ataaatttcctacaaaaagaagaaaa 79
             ||||||||||| ||||||||||||||
Sbjct: 69635 ataaatttcctgcaaaaagaagaaaa 69660

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>gb|AC024934.38| Homo sapiens 12 BAC RP11-329A19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 204819

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 230    tctgcacttgtgttcctgagca 251
              ||||||||||||||||||||||
Sbjct: 102287 tctgcacttgtgttcctgagca 102266

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 54       ataaatttcctacaaaaagaagaaaa 79
                ||||||||||| ||||||||||||||
Sbjct: 25885681 ataaatttcctgcaaaaagaagaaaa 25885706



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 54       ataaatttcctacaaaaagaagaaaa 79
                ||||||||||| ||||||||||||||
Sbjct: 19287803 ataaatttcctgcaaaaagaagaaaa 19287828

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>dbj|AK072373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065D01, full
            insert sequence
          Length = 3109

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 54   ataaatttcctacaaaaagaagaaaa 79
            ||||||||||| ||||||||||||||
Sbjct: 2475 ataaatttcctgcaaaaagaagaaaa 2450

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>emb|AL731629.2|OSJN00274 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13,
             complete sequence
          Length = 139226

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 54    ataaatttcctacaaaaagaagaaaa 79
             ||||||||||| ||||||||||||||
Sbjct: 11943 ataaatttcctgcaaaaagaagaaaa 11968

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>gb|AC146051.2| Pan troglodytes BAC clone RP43-73B15 from 7, complete sequence
          Length = 157886

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 63     ctacaaaaagaagaaaatatc 83
              |||||||||||||||||||||
Sbjct: 112423 ctacaaaaagaagaaaatatc 112403

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>gb|AC084872.6| Homo sapiens BAC clone RP11-702N14 from 7, complete sequence
          Length = 59281

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    ctacaaaaagaagaaaatatc 83
             |||||||||||||||||||||
Sbjct: 34701 ctacaaaaagaagaaaatatc 34721

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>emb|AL359697.23| Human DNA sequence from clone RP11-399C16 on chromosome 10 Contains the
              3' end of the MLLT10 gene for myeloid/lymphoid or
              mixed-lineage leukemia (trithorax homolog, Drosophila);
              translocated to, 10 (AF10), the 3' end of the DNAJC1 gene
              for DnaJ (Hsp40) homolog, subfamily C, member 1 (DNAJL1)
              and a CpG island, complete sequence
          Length = 171868

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 439    atctttaccttgggctctgta 459
              |||||||||||||||||||||
Sbjct: 134765 atctttaccttgggctctgta 134745

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>gb|AC008731.8| Homo sapiens chromosome 16 clone CTD-2515A14, complete sequence
          Length = 219013

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 548    caccatttaataaatgcctgg 568
              |||||||||||||||||||||
Sbjct: 134186 caccatttaataaatgcctgg 134206

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>ref|XM_419659.1| PREDICTED: Gallus gallus similar to SAM and SH3 domains containing
            protein 1 (Proline-glutamate repeat-containing protein)
            (LOC421621), mRNA
          Length = 9480

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 57   aatttcctacaaaaagaaga 76
            ||||||||||||||||||||
Sbjct: 7264 aatttcctacaaaaagaaga 7245

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>gb|AC127415.3| Mus musculus BAC clone RP23-450L4 from chromosome 19, complete sequence
          Length = 177302

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    actgctatttgtgttgctgg 53
             ||||||||||||||||||||
Sbjct: 89595 actgctatttgtgttgctgg 89576

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>gb|DQ452068.1| Homo sapiens lipoprotein, Lp(a) (LPA) gene, complete cds
          Length = 136345

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 553    tttaataaatgcctggaaac 572
              ||||||||||||||||||||
Sbjct: 110210 tttaataaatgcctggaaac 110191

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>gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome
          Length = 920079

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 54     ataaatttcctacaaaaagaagaaaata 81
              |||||||| ||| |||||||||||||||
Sbjct: 540045 ataaattttctaaaaaaagaagaaaata 540018

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>gb|AC144430.14| Medicago truncatula clone mth2-16j2, complete sequence
          Length = 125368

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    tacaaaaagaagaaaatatc 83
             ||||||||||||||||||||
Sbjct: 32450 tacaaaaagaagaaaatatc 32469

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>emb|Z99495.1|HS441J1 Human DNA sequence from clone RP3-441J1 on chromosome 6p24 Contains the
              5' end of gene KIAA1733, complete sequence
          Length = 151213

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    gcaaatctcagtgtctgcac 236
              ||||||||||||||||||||
Sbjct: 104266 gcaaatctcagtgtctgcac 104285

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>emb|AL596089.19| Human DNA sequence from clone RP11-414A5 on chromosome 6 Contains the
             3' end of the LPA gene for lipoprotein (Lp(a)) and a CpG
             island, complete sequence
          Length = 135751

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 553   tttaataaatgcctggaaac 572
             ||||||||||||||||||||
Sbjct: 40771 tttaataaatgcctggaaac 40790

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>emb|AL390242.17| Human DNA sequence from clone RP11-31F15 on chromosome 1p13.1-13.3
             Contains the 3' end of a novel gene, the 5' end of a novel
             gene and the 3' end of a novel gene, complete sequence
          Length = 68883

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    ataaatttcctacaaaaaga 73
             ||||||||||||||||||||
Sbjct: 14555 ataaatttcctacaaaaaga 14574

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>emb|AL078462.9|HSJ159G19 Human DNA sequence from clone RP1-159G19 on chromosome 6q14.1-14.3
             Contains the 3' part of a novel gene, complete sequence
          Length = 88509

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    tttcctacaaaaagaagaaa 78
             ||||||||||||||||||||
Sbjct: 68525 tttcctacaaaaagaagaaa 68544

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>gb|AE006640.1| Homo sapiens 16p13.3 sequence section 8 of 8
          Length = 81579

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   gtggtgactccccttcttga 141
             ||||||||||||||||||||
Sbjct: 36133 gtggtgactccccttcttga 36114

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>gb|AC097639.2| Homo sapiens chromosome 3 clone RP11-384L8, complete sequence
          Length = 177384

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 309    gatggccttgcacctccaacagagtgat 336
              ||||||||| ||||||||||| ||||||
Sbjct: 136609 gatggccttccacctccaacacagtgat 136582

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>gb|AC107878.2| Homo sapiens chromosome 18, clone RP11-138C8, complete sequence
          Length = 182375

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 638   ggtccaaccaatctatactt 657
             ||||||||||||||||||||
Sbjct: 28070 ggtccaaccaatctatactt 28089

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>gb|AC103558.2| Homo sapiens chromosome 3 clone RP11-46B13, complete sequence
          Length = 174539

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 309   gatggccttgcacctccaacagagtgat 336
             ||||||||| ||||||||||| ||||||
Sbjct: 49542 gatggccttccacctccaacacagtgat 49515

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>gb|AC091823.3| Homo sapiens chromosome 5 clone CTC-417G23, complete sequence
          Length = 134567

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 138   ttgatgtatcctcctaggaaacag 161
             ||||||| ||||||||||||||||
Sbjct: 53464 ttgatgtttcctcctaggaaacag 53441

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>gb|AC013660.9| Homo sapiens, clone RP11-20A14, complete sequence
          Length = 164324

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 638    ggtccaaccaatctatactt 657
              ||||||||||||||||||||
Sbjct: 152559 ggtccaaccaatctatactt 152578

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>dbj|AK049877.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched
            library, clone:C630005L12 product:unclassifiable, full
            insert sequence
          Length = 3780

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 614  caacaacaaggcttgcaggt 633
            ||||||||||||||||||||
Sbjct: 3496 caacaacaaggcttgcaggt 3477

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>gb|AC008209.5|AC008209 Drosophila melanogaster, chromosome 3R, region 96F-96F, BAC clone
             BACR06K17, complete sequence
          Length = 169902

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 510   agccccacttccctttttgt 529
             ||||||||||||||||||||
Sbjct: 80944 agccccacttccctttttgt 80963

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>gb|AC010580.5|AC010580 Drosophila melanogaster, chromosome 3R, region 96F-96F, BAC clone
              BACR48J06, complete sequence
          Length = 163970

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 510    agccccacttccctttttgt 529
              ||||||||||||||||||||
Sbjct: 151713 agccccacttccctttttgt 151732

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>gb|AC011310.3|AC011310 Homo sapiens BAC clone CTD-2590C17 from 7p11.2-p21, complete sequence
          Length = 142834

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    ctacaaaaagaagaaaatat 82
             ||||||||||||||||||||
Sbjct: 85542 ctacaaaaagaagaaaatat 85561

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>gb|AY190083.1| Entamoeba invadens rDNA-containing episome sequence
          Length = 22481

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 488  gaacttcaaccttgaaaaat 507
            ||||||||||||||||||||
Sbjct: 6842 gaacttcaaccttgaaaaat 6823

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>gb|AC018641.3|AC018641 Human Chromosome 7 clone RP11-182G3, complete sequence
          Length = 183060

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     ctacaaaaagaagaaaatat 82
              ||||||||||||||||||||
Sbjct: 170600 ctacaaaaagaagaaaatat 170581

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>gb|AC018637.3|AC018637 Human Chromosome 7 clone RP11-175P8, complete sequence
          Length = 184571

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     ctacaaaaagaagaaaatat 82
              ||||||||||||||||||||
Sbjct: 103670 ctacaaaaagaagaaaatat 103689

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>dbj|AK000115.1| Homo sapiens cDNA FLJ20108 fis, clone COL05052
          Length = 2169

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 309 gatggccttgcacctccaacagagtgat 336
           ||||||||| ||||||||||| ||||||
Sbjct: 788 gatggccttccacctccaacacagtgat 761

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>gb|AE003753.3| Drosophila melanogaster chromosome 3R, section 91 of 118 of the complete
              sequence
          Length = 226793

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 510    agccccacttccctttttgt 529
              ||||||||||||||||||||
Sbjct: 146729 agccccacttccctttttgt 146748

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>emb|AL772399.9| Mouse DNA sequence from clone RP23-220L1 on chromosome 4, complete
             sequence
          Length = 103488

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   caaatctcagtgtctgcact 237
             ||||||||||||||||||||
Sbjct: 88737 caaatctcagtgtctgcact 88756

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>emb|BX000694.9| Mouse DNA sequence from clone RP23-30B5 on chromosome 4, complete
             sequence
          Length = 55045

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 614   caacaacaaggcttgcaggt 633
             ||||||||||||||||||||
Sbjct: 31940 caacaacaaggcttgcaggt 31921

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>emb|AL928992.7| Mouse DNA sequence from clone RP23-208O9 on chromosome 2, complete
              sequence
          Length = 136064

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 59     tttcctacaaaaagaagaaaatat 82
              ||||||| ||||||||||||||||
Sbjct: 102550 tttcctaaaaaaagaagaaaatat 102573

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>gb|AC171070.2| Rhesus Macaque CHR5 BAC CH250-450H6 (Children's Hospital Oakland
             Research Institute Rhesus macaque Adult Male BAC Library)
             complete sequence
          Length = 171429

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 320   acctccaacagagtgatttcagag 343
             ||||||||||||||||| ||||||
Sbjct: 38647 acctccaacagagtgatctcagag 38624


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,718,841
Number of Sequences: 3902068
Number of extensions: 6718841
Number of successful extensions: 123047
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122748
Number of HSP's gapped (non-prelim): 295
length of query: 670
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 647
effective length of database: 17,143,297,704
effective search space: 11091713614488
effective search space used: 11091713614488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result