ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31e13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O5AT1_HUMAN (Q8NHC5) Olfactory receptor 5AT1 30 3.4
2YCF2_PINTH (P41653) Protein ycf2 30 5.9
3CEF1_NEUCR (Q7SAF6) Pre-mRNA-splicing factor cef-1 29 7.7

>O5AT1_HUMAN (Q8NHC5) Olfactory receptor 5AT1|
          Length = 309

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 17/82 (20%)
 Frame = -3

Query: 209 LLMPIADHRSDCICLIHISFVLLYCCKL*TS-----------------RYCLKGLSFGFL 81
           +LM  + +++ CI L  I F+L+Y C L  +                  + LK LSF  L
Sbjct: 11  ILMGFSTNKNMCI-LHSILFLLIYLCALMGNVLIIMITTLDHHLHTPVYFFLKNLSFLDL 69

Query: 80  CLLMLPLFKTISRILVNNHVLS 15
           CL+ +   K+I+  L++N+ +S
Sbjct: 70  CLISVTAPKSIANSLIHNNSIS 91



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>YCF2_PINTH (P41653) Protein ycf2|
          Length = 2054

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +2

Query: 14   NLRHDCSPRYEIWF*TMATST---NREIQNLDLLSNT*TFIAYNSKEEQNLYELNRCSQT 184
            N   +  PR + WF T        N +I     LSN+       SKEEQN+Y +++    
Sbjct: 961  NKNEEIFPRIQDWFVTECLKNKIVNEDIDGRSTLSNS-------SKEEQNIYRISQIDSI 1013

Query: 185  YDLRW 199
            +  +W
Sbjct: 1014 FS-KW 1017



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>CEF1_NEUCR (Q7SAF6) Pre-mRNA-splicing factor cef-1|
          Length = 779

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 514 PVEEDLGNKAKGEEDRREDEYKK 446
           P ++ +GNK KGEED R+ + +K
Sbjct: 254 PKKQQVGNKRKGEEDERDGKRRK 276


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,393,835
Number of Sequences: 219361
Number of extensions: 957040
Number of successful extensions: 2160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2160
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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